Isolated polynucleotides expressing or modulating micrornas or targets of same, transgenic plants comprising same and uses thereof

ABSTRACT

Disclosed are isolated polynucleotides expressing or modulating microRNAs or targets. Further disclosed are transgenic plants comprising an isolated polynucleotide expressing or modulating microRNAs or target for improving nitrogen use efficiency, abiotic stress tolerance, biomass, vigor or yield of a plant. The sequences of microRNAs and targets to be modulated are also disclosed.

FIELD AND BACKGROUND OF THE INVENTION

The present invention, in some embodiments thereof, relates to isolatedpolynucleotides expressing or modulating microRNAs or targets of same,transgenic plants comprising same and uses thereof in improving nitrogenuse efficiency, abiotic stress tolerance, biomass, vigor or yield of aplant.

Consumption of soybean for food production is increasing worldwidebecause of its reported beneficial health effects. Soybean is alsoviewed as an attractive crop for the production of biodiesel.Importantly, it has the ability to fix atmospheric nitrogen, which inturn may cut the input of nitrogen fertilizer that often accounts forthe single largest energy input in agriculture.

With a growing world population, increasing demand for food, fuel andfiber, and a changing climate, agriculture faces unprecedentedchallenges. In general, shortage in water supply is one of the mostsevere global agricultural problems affecting plant growth and cropyield. Excessive efforts are made to alleviate the harmful effects ofdesertification of the world's arable land. Farmers are seekingadvanced, biotechnology-based solutions to enable them to obtain stablehigh yields and give them the potential to reduce irrigation costs or togrow crops in areas where potable water is a limiting factor. It shouldbe noted that improved abiotic stress (ABST) tolerance will conferplants with improved vigor also under non-stress conditions, resultingin crops having improved biomass and/or yield.

ABST is a collective term for numerous extreme environmental parameterssuch as drought, high or low salinity, high or low temperature/light,and nutrient imbalances. The major agricultural crops (corn, rice,wheat, canola and soybean) account for over half of total human caloricintake, giving their overall yield and quality vast importance. ABSTcauses more than 50% yield loss of the above mentioned major crops.Among the various ABSTs, drought is the major factor that limits cropproductivity worldwide. Short-term conditions of reduced environmentalwater content typically occur during the life cycle of most crop plants.Although most plants have evolved strategies to survive theseconditions, when the severity and duration of drought become too great,major alterations to the plant metabolism take place. As a result, theplant development, growth and yield profoundly diminish. Furthermore,drought is associated with increased susceptibility to various diseases.ABST-induced dehydration or osmotic stress, in the form of reducedavailability of water and disruption of turgor pressure, causeirreversible cellular damage. A water-limiting environment at variousplant developmental stages may activate various physiological changes.

In soybean, drought, for instance, reduces yield by approximately 40%,with the most critical period for water deprivation being the floweringstage and the period following flowering. Water deficit, salinity andlow/high temperatures are stresses that cause plant cellulardehydration, due to transpiration rate that exceeds water uptake. Wateruse efficiency (WUE), defined as the amount of biomass accumulated perunit of water used, plays an important role in determining a plant'sability to tolerate drought stress. The higher the WUE of a plant, thehigher the crop productivity and total biomass yield under droughtconditions. Thus, efforts are made worldwide to increase the WUE of themost important crops and reach the best yield performance under extremewater deficiency conditions.

Studies have shown that plant adaptations to drought and other adverseenvironmental conditions are complex genetic traits with polygenicnature. Conventional means for crop and horticultural improvementsutilize selective breeding techniques to identify plants havingdesirable characteristics. However, selective breeding is tedious, timeconsuming and has an unpredictable outcome. Furthermore, limitedgermplasm resources for yield improvement and incompatibility in crossesbetween distantly related plant species represent significant problemsencountered in conventional breeding. Advances in genetic engineeringhave allowed mankind to modify the germplasm of plants by expression ofgenes-of-interest in plants. Such a technology has the capacity togenerate crops or plants with improved economic, agronomic orhorticultural traits. However, generation of transgenic plantsexpressing full-length genes is typically hampered by the selection ofoptimal regulatory sequences and identification of those raretransformation events that exhibit sufficient levels of gene productsexpression.

SUMMARY OF THE INVENTION

According to an aspect of some embodiments of the present inventionthere is provided a method of improving abiotic stress tolerance,nitrogen use efficiency, biomass, vigor or yield of a plant, the methodcomprising expressing within the plant an exogenous polynucleotide whichdownregulates an activity or expression of a gene encoding an RNAimolecule having a nucleic acid sequence at least 90% identical to SEQ IDNOs: 139, 57-79, 202-219, 126-138, 140-161, 236-255, 169-173, 260-261,3953-5114, 5117-6277, 6278, 11905-11909, 11940-11955, 11959-11961,wherein the RNAi molecule regulates abiotic stress tolerance of theplant, thereby improving abiotic stress tolerance, nitrogen useefficiency, biomass, vigor or yield of the plant.

According to an aspect of some embodiments of the present inventionthere is provided a method of improving abiotic stress tolerance,nitrogen use efficiency, biomass, vigor or yield of a plant, the methodcomprising expressing within the plant an exogenous polynucleotidehaving a nucleic acid sequence at least 90% identical to SEQ ID NOs:1-56, 174-201, 80-125, 220-235, 162-168, 256-259, 262-2086, 2087-3910,3911, 11616, 11615, 11874, 11875-11904, 11910-11939, 11956, 11957 or11958, wherein the nucleic acid sequence is capable of regulatingabiotic stress tolerance of the plant, thereby improving abiotic stresstolerance, nitrogen use efficiency, biomass, vigor or yield of theplant.

According to an aspect of some embodiments of the present inventionthere is provided a transgenic plant exogenously expressing apolynucleotide having a nucleic acid sequence at least 90% identical toSEQ ID NOs: SEQ ID NOs: 1-56, 174-201, 80-125, 220-235, 162-168,256-259, 262-2086, 2087-3910, 3911, 11616, 11615, 11874, 11875-11904,11910-11939, 11956, 11957 or 11958, wherein the nucleic acid sequence iscapable of regulating abiotic stress tolerance of the plant.

According to some embodiments of the invention, the exogenouspolynucleotide encodes a precursor of the nucleic acid sequence.

According to some embodiments of the invention, the precursor of thenucleic acid sequence is at least 60% identical to SEQ ID NO: 174-201,220-235, 256-259, 2087-3910, 3911, 11910-11939, 11615, 11956, 11957 or11958.

According to some embodiments of the invention, the precursor of thenucleic acid sequence is at least 60% identical to SEQ ID NO: 174-201,220-235, 256-259, 2087-3910, 3911, 11875-11904, 11910-11939, 11615,11956, 11957 or 11958.

According to some embodiments of the invention, the exogenouspolynucleotide encodes a mature miRNA.

According to some embodiments of the invention, the exogenouspolynucleotide is selected from the group consisting of SEQ ID NO: 1-56,174-201, 80-125, 220-235, 162-168, 256-259, 262-2086, 2087-3910, 3911,11616, 11615, 11874, 11875-11904, 11910-11939, 11956, 11957 or 11958.

According to an aspect of some embodiments of the present inventionthere is provided a nucleic acid construct comprising a nucleic acidsequence being at least 90% identical to SEQ ID NO: 139, 1-201, 202-235,236-3910, 3911, 11616, 11615, 11874, 11875-11904, 11910-11939, 11956,11957, 11958, 11940-11955, 11905-11909, 11959-11961, wherein the nucleicacid sequence is capable of regulating abiotic stress tolerance of aplant and wherein the nucleic acid sequence is under the regulation of acis-acting regulatory element.

According to some embodiments of the invention, the nucleic acidsequence is selected from the group consisting of SEQ ID NOs: 1-56,174-201, 80-125, 220-235, 162-168, 256-259, 262-2086, 2087-3910, 3911,11616, 11615, 11874, 11875-11904, 11910-11939, 11956, 11957 or 11958.

According to some embodiments of the invention, the nucleic acidsequence is selected from the group consisting of SEQ ID NOs: 139,57-79, 202-219, 126-138, 140-161, 236-255, 169-173, 260-261, 3953-5114,5117-6277, 6278, 11905-11909, 11959-11961, 11940-11955.

According to an aspect of some embodiments of the present inventionthere is provided a transgenic plant exogenously expressing apolynucleotide which downregulates an activity or expression of a geneencoding an RNAi molecule having a nucleic acid sequence at least 90%identical to SEQ ID NOs: 139, 57-79, 202-219, 126-138, 140-161, 236-255,169-173, 260-261, 3953-5114, 5117-6277, 6278 11905-11909, 11940-11955,11959-11961.

According to an aspect of some embodiments of the present inventionthere is provided a transgenic plant exogenously expressing apolynucleotide which downregulates an activity or expression of a geneencoding an RNAi molecule having a nucleic acid sequence at least 90%identical to SEQ ID NOs: 139, 1-201, 202-235, 236-3910, 3911, 11616,11615, 11874, 11875-11904, 11910-11939, 11956, 11957, 11958,11905-11909, 11940-11955, 11959-11961.

According to an aspect of some embodiments of the present inventionthere is provided an isolated polynucleotide which downregulates anactivity or expression of a gene encoding an RNAi molecule having anucleic acid sequence selected from the group consisting of SEQ ID NOs:139, 57-79, 202-219, 126-138, 140-161, 236-255, 169-173, 260-261,3953-5114, 5117-6277, 6278, 11905-11909, 11940-11955, 11959-11961.

According to an aspect of some embodiments of the present inventionthere is provided a transgenic plant exogenously expressing apolynucleotide which downregulates an activity or expression of a geneencoding an RNAi molecule having a nucleic acid sequence at least 90%identical to SEQ ID NOs: 139, 57-79, 202-219, 126-138, 140-161, 236-255,169-173, 260-261, 3953-5114, 5117-6277, 6278, 11905-11909, 11940-11955,11959-11961.

According to an aspect of some embodiments of the present inventionthere is provided an isolated polynucleotide which downregulates anactivity or expression of a gene encoding an RNAi molecule having anucleic acid sequence selected from the group consisting of SEQ ID NOs:139, 57-79, 202-219, 126-138, 140-161, 236-255, 169-173, 260-261,3953-5114, 5117-6277, 6278, 11905-11909, 11940-11955, 11959-11961.

According to an aspect of some embodiments of the present inventionthere is provided an isolated polynucleotide which downregulates anactivity or expression of a gene encoding an RNAi molecule having anucleic acid sequence selected from the group consisting of SEQ ID NOs:139, 1-201, 202-235, 236-3910, 3911, 3953-5114, 5117-6277, 6278, 11616,11615, 11874, 11875-11904, 11910-11939, 11956, 11957, 11958,11905-11909, 11940-11955, 11959-11961.

According to an aspect of some embodiments of the present inventionthere is provided an isolated polynucleotide which downregulates anactivity or expression of a gene encoding an RNAi molecule having anucleic acid sequence selected from the group consisting of SEQ ID NOs:139, 1-201, 202-235, 236-3910, 3911, 11616, 11615, 11874, 11875-11904,11910-11939, 11956, 11957, 11958, 11905-11909, 11940-11955, 11959-11961.

According to some embodiments of the invention, the polynucleotideencodes a miRNA-Resistant Target as set forth in SEQ ID NO: 11258-11359.

According to some embodiments of the invention, the polynucleotideencodes a miRNA-Resistant Target as set forth in SEQ ID NO: 11091-11257.

According to some embodiments of the invention, the isolatedpolynucleotide encodes a target mimic as set forth in SEQ ID NO:11564-11613.

According to some embodiments of the invention, the polynucleotideencodes a target mimic as set forth in SEQ ID NO: 11437-11513.

According to an aspect of some embodiments of the present inventionthere is provided a nucleic acid construct comprising the isolatedpolynucleotide under the regulation of a cis-acting regulatory element.

According to some embodiments of the invention, the abiotic stress isselected from the group consisting of salinity, drought, waterdeprivation, flood, etiolation, low temperature, high temperature, heavymetal toxicity, anaerobiosis, nutrient deficiency, nutrient excess,atmospheric pollution and UV irradiation.

According to an aspect of some embodiments of the present inventionthere is provided a method of improving abiotic stress tolerance,nitrogen use efficiency, biomass, vigor or yield of a plant, the methodcomprising expressing within the plant an exogenous polynucleotideencoding a polypeptide having an amino acid sequence at least 80%homologous or identical to SEQ ID NOs: 9591-10364, wherein thepolypeptide is capable of regulating abiotic stress tolerance of theplant, thereby improving abiotic stress tolerance, nitrogen useefficiency, biomass, vigor or yield of the plant.

According to an aspect of some embodiments of the present inventionthere is provided a transgenic plant exogenously expressing apolynucleotide encoding a polypeptide having an amino acid sequence atleast 80% homologous or identical to SEQ ID NOs: 9591-10364, wherein thepolypeptide is capable of regulating abiotic stress tolerance of theplant.

According to an aspect of some embodiments of the present inventionthere is provided a nucleic acid construct comprising a polynucleotideencoding a polypeptide having an amino acid sequence at least 80%homologous to SEQ ID NOs: 9591-10364, wherein the polypeptide is capableof regulating abiotic stress tolerance of the plant, and wherein thepolynucleotide is under a transcriptional control of a cis-actingregulatory element.

According to some embodiments of the invention, the polynucleotide isselected from the group consisting of SEQ ID NO: 10365-10963.

According to some embodiments of the invention, the polypeptide isselected from the group consisting of SEQ ID NO: 9591-10364.

According to some embodiments of the invention, the cis-actingregulatory element comprises a promoter.

According to some embodiments of the invention, the promoter comprises atissue-specific promoter.

According to some embodiments of the invention, the tissue-specificpromoter comprises a root specific promoter.

According to some embodiments of the invention, the method furthercomprises growing the plant under limiting nitrogen conditions.

According to some embodiments of the invention, the method furthercomprises growing the plant under abiotic stress.

According to some embodiments of the invention, the abiotic stress isselected from the group consisting of salinity, drought, waterdeprivation, flood, etiolation, low temperature, high temperature, heavymetal toxicity, anaerobiosis, nutrient deficiency, nutrient excess,atmospheric pollution and UV irradiation.

According to some embodiments of the invention, the plant is amonocotyledon.

According to some embodiments of the invention, the plant is adicotyledon.

According to an aspect of some embodiments of the present inventionthere is provided a method of improving abiotic stress tolerance,nitrogen use efficiency, biomass, vigor or yield of a plant, the methodcomprising expressing within the plant an exogenous polynucleotide whichdownregulates an activity or expression of a polypeptide having an aminoacid sequence at least 80% homologous or identical to SEQ ID NOs:6315-8129, wherein the polypeptide is capable of regulating abioticstress tolerance of the plant, thereby improving abiotic stresstolerance, nitrogen use efficiency, biomass, vigor or yield of theplant.

According to an aspect of some embodiments of the present inventionthere is provided a transgenic plant exogenously expressing apolynucleotide which downregulates an activity or expression of apolypeptide having an amino acid sequence at least 80% homologous oridentical to SEQ ID NOs: 6315-8129, wherein the polypeptide is capableof regulating abiotic stress tolerance of the plant.

According to an aspect of some embodiments of the present inventionthere is provided a nucleic acid construct comprising a polynucleotidewhich downregulates an activity or expression of a polypeptide having anamino acid sequence at least 80% homologous to SEQ ID NOs: 6315-8129,wherein the polypeptide is capable of regulating abiotic stresstolerance of a plant, the nucleic acid sequence being under theregulation of a cis-acting regulatory element.

According to some embodiments of the invention, the polynucleotide actsby a mechanism selected from the group consisting of sense suppression,antisense suppression, ribozyme inhibition, gene disruption.

According to some embodiments of the invention, the cis-actingregulatory element comprises a promoter.

According to some embodiments of the invention, the promoter comprises atissue-specific promoter.

According to some embodiments of the invention, the tissue-specificpromoter comprises a root specific promoter.

Unless otherwise defined, all technical and/or scientific terms usedherein have the same meaning as commonly understood by one of ordinaryskill in the art to which the invention pertains. Although methods andmaterials similar or equivalent to those described herein can be used inthe practice or testing of embodiments of the invention, exemplarymethods and/or materials are described below. In case of conflict, thepatent specification, including definitions, will control. In addition,the materials, methods, and examples are illustrative only and are notintended to be necessarily limiting.

BRIEF DESCRIPTION OF THE DRAWINGS

Some embodiments of the invention are herein described, by way ofexample only, with reference to the accompanying drawings. With specificreference now to the drawings in detail, it is stressed that theparticulars shown are by way of example and for purposes of illustrativediscussion of embodiments of the invention. In this regard, thedescription taken with the drawings makes apparent to those skilled inthe art how embodiments of the invention may be practiced.

In the drawings:

FIG. 1 is a schematic illustration of a plasmid map of the binary vectorpORE-E1 used for plant transformation according to some embodiments ofthe invention.

FIG. 2 is a schematic illustration of a plasmid map of the binary vectorpORE-E2 used for plant transformation according to some embodiments ofthe invention.

FIG. 3 is a schematic illustration of a plasmid map of the binary vectorpORE-E3 used for plant transformation according to some embodiments ofthe invention.

DESCRIPTION OF SPECIFIC EMBODIMENTS OF THE INVENTION

The present invention, in some embodiments thereof, relates to isolatedpolynucleotides expressing or modulating microRNAs or targets of same,transgenic plants comprising same and uses thereof in improving nitrogenuse efficiency, abiotic stress tolerance, biomass, vigor or yield of aplant.

Before explaining at least one embodiment of the invention in detail, itis to be understood that the invention is not necessarily limited in itsapplication to the details set forth in the following description orexemplified by the Examples. The invention is capable of otherembodiments or of being practiced or carried out in various ways.

Environmental stresses represent the most limiting factors foragricultural productivity. Apart from biotic stress caused by plantpathogens, there are a number of abiotic stresses such as extremes intemperature, drought, salinity, heavy metals and radiation which allhave detrimental effects on plant growth and yield. Abiotic stresseslead to dehydration or osmotic stress through reduced availability ofwater for vital cellular functions and maintenance of turgor pressure.Stomata closure, reduced supply of CO₂ and slower rate of biochemicalreactions during prolonged periods of dehydration, high light intensity,high and low temperatures lead to high production of Reactive OxygenIntermediates (ROI) in the chloroplasts causing irreversible cellulardamage and photo inhibition.

Understanding the molecular mechanism for providing protection againstbiotic and abiotic stresses may lead to the identification of genesassociated with stress tolerance. Optimum homeostasis is always a key toliving organisms for adjusted environments.

While reducing the present invention to practice, the present inventorshave uncovered dsRNA sequences that are differentially expressed in soyplants grown under abiotic stress conditions including, salt stress,heat stress and drought, versus soy plants grown under optimalconditions (see Example 1 of the Examples section which follows).Following extensive experimentation and screening, the present inventorshave uncovered miRNA sequences that are upregulated or downregulated inleaf samples, and suggest using same or sequences controlling same inthe generation of transgenic plants having improved abiotic stresstolerance.

Each of the above mechanisms may affect water uptake as well as saltabsorption and therefore embodiments of the invention further relate toenhancement of abiotic stress tolerance, nitrogen use efficiency,biomass, vigor or yield of the plant.

Example 5 of the Examples section below, validates the present resultsby showing that some miRs (e.g., gma-miR4376-5p, zma-miR396b-3p,aly-miR396b-3p, gma-miR156g, ma-miRf10687-akr-omolog gma-miR159d,aly-miR396b-3p, gma-miR4416a, aly-miR396a-3p, zma-miR396b-3p,gma-miR4412-3p, csi-miR162-5p, ath-miRf10279-akr) according to specificembodiment of the invention are indeed differentially expressed underabiotic stress conditions as was initially identified by microarrayanalysis. The present inventors were also capable of generatingtransgenic plants which overexpress the indicated miRs (see Example 7).

Thus, according to an aspect of the invention there is provided a methodof improving abiotic stress tolerance, nitrogen use efficiency, biomass,vigor or yield of a plant, the method comprising expressing within theplant an exogenous polynucleotide having a nucleic acid sequence atleast 80%, 85%, 90% or 95% identical to SEQ ID NOs: 1-56, 174-201,80-125, 220-235, 162-168, 256-259, 262-2086, 11616, 11615, 2087-3910,3911, 11910-11939, 11874-11904, 11956, 11957 or 11958 wherein thenucleic acid sequence is capable of regulating abiotic stress toleranceof the plant, thereby improving abiotic stress tolerance, nitrogen useefficiency, biomass, vigor or yield of the plant.

According to a specific embodiment the exogenous polynucleotide has anucleic acid sequence at least 90% identical to SEQ ID NOs: 1-56,174-201, 80-125, 220-235, 162-168, 256-259, 262-2086, 11616, 11615,2087-3910, 3911, 11910-11939, 11874-11904, 11956, 11957 or 11958.

According to a specific embodiment the exogenous polynucleotide has anucleic acid sequence at least 95% identical to SEQ ID NOs: 1-56,174-201, 80-125, 220-235, 162-168, 256-259, 262-2086, 11616, 11615,2087-3910, 3911, 11910-11939, 11874-11904, 11956, 11957 or 11958.

According to a specific embodiment the exogenous polynucleotide has anucleic acid sequence as set forth in SEQ ID NOs: 1-56, 174-201, 80-125,220-235, 162-168, 256-259, 262-2086, 11616, 11615, 2087-3910, 3911,11910-11939, 11874-11904, 11956, 11957 or 11958.

The phrase “abiotic stress” as used herein refers to any adverse effecton metabolism, growth, viability and/or reproduction of a plant. Abioticstress can be induced by any of suboptimal environmental growthconditions such as, for example, water deficit or drought, flooding,freezing, low or high temperature, strong winds, heavy metal toxicity,anaerobiosis, high or low nutrient levels (e.g. nutrient deficiency),high or low salt levels (e.g. salinity), atmospheric pollution, high orlow light intensities (e.g. insufficient light) or UV irradiation.Abiotic stress may be a short term effect (e.g. acute effect, e.g.lasting for about a week) or alternatively may be persistent (e.g.chronic effect, e.g. lasting for example 10 days or more). The presentinvention contemplates situations in which there is a single abioticstress condition or alternatively situations in which two or moreabiotic stresses occur.

According to an exemplary embodiment the abiotic stress refers tosalinity.

According to another exemplary embodiment the abiotic stress refers todrought.

According to another exemplary embodiment the abiotic stress refers to atemperature stress.

As used herein the phrase “abiotic stress tolerance” refers to theability of a plant to endure an abiotic stress without exhibitingsubstantial physiological or physical damage (e.g. alteration inmetabolism, growth, viability and/or reproducibility of the plant).

As used herein the phrase “nitrogen use efficiency (NUE)” refers to ameasure of crop production per unit of nitrogen fertilizer input.Fertilizer use efficiency (FUE) is a measure of NUE. Crop production canbe measured by biomass, vigor or yield. The plant's nitrogen useefficiency is typically a result of an alteration in at least one of theuptake, spread, absorbance, accumulation, relocation (within the plant)and use of nitrogen absorbed by the plant. Improved NUE is with respectto that of a non-transgenic plant (i.e., lacking the transgene of thetransgenic plant) of the same species and of the same developmentalstage and grown under the same conditions.

As used herein the phrase “nitrogen-limiting conditions” refers togrowth conditions which include a level (e.g., concentration) ofnitrogen (e.g., ammonium or nitrate) applied which is below the levelneeded for optimal plant metabolism, growth, reproduction and/orviability.

As used herein the term/phrase “biomass”, “biomass of a plant” or “plantbiomass” refers to the amount (e.g., measured in grams of air-drytissue) of a tissue produced from the plant in a growing season. Anincrease in plant biomass can be in the whole plant or in parts thereofsuch as aboveground (e.g. harvestable) parts, vegetative biomass, rootsand/or seeds or contents thereof (e.g., oil, starch etc.).

As used herein the term/phrase “vigor”, “vigor of a plant” or “plantvigor” refers to the amount (e.g., measured by weight) of tissueproduced by the plant in a given time. Increased vigor could determineor affect the plant yield or the yield per growing time or growing area.In addition, early vigor (e.g. seed and/or seedling) results in improvedfield stand.

As used herein the term/phrase “yield”, “yield of a plant” or “plantyield” refers to the amount (e.g., as determined by weight or size) orquantity (e.g., numbers) of tissues or organs produced per plant or pergrowing season. Increased yield of a plant can affect the economicbenefit one can obtain from the plant in a certain growing area and/orgrowing time.

According to an exemplary embodiment the yield is measured by cellulosecontent, oil content, starch content and the like.

According to another exemplary embodiment the yield is measured by oilcontent.

According to another exemplary embodiment the yield is measured byprotein content.

According to another exemplary embodiment, the yield is measured by seednumber per plant or part thereof (e.g., kernel, bean).

A plant yield can be affected by various parameters including, but notlimited to, plant biomass; plant vigor; plant growth rate; seed yield;seed or grain quantity; seed or grain quality; oil yield; content ofoil, starch and/or protein in harvested organs (e.g., seeds orvegetative parts of the plant); number of flowers (e.g. florets) perpanicle (e.g. expressed as a ratio of number of filled seeds over numberof primary panicles); harvest index; number of plants grown per area;number and size of harvested organs per plant and per area; number ofplants per growing area (e.g. density); number of harvested organs infield; total leaf area; carbon assimilation and carbon partitioning(e.g. the distribution/allocation of carbon within the plant);resistance to shade; number of harvestable organs (e.g. seeds), seedsper pod, weight per seed; and modified architecture [such as increasestalk diameter, thickness or improvement of physical properties (e.g.elasticity)].

As used herein the term “improving” or “increasing” refers to at leastabout 2%, at least about 3%, at least about 4%, at least about 5%, atleast about 10%, at least about 15%, at least about 20%, at least about25%, at least about 30%, at least about 35%, at least about 40%, atleast about 45%, at least about 50%, at least about 60%, at least about70%, at least about 80%, at least about 90% or greater increase in NUE,in tolerance to abiotic stress, in yield, in biomass or in vigor of aplant, as compared to a native or wild-type plants [i.e., plants notgenetically modified to express the biomolecules (polynucleotides) ofthe invention, e.g., a non-transformed plant of the same species or atransformed plant transformed with a control vector, either of whichbeing of the same developmental stage and grown under the same growthconditions as the transformed plant].

Improved plant NUE is translated in the field into either harvestingsimilar quantities of yield, while implementing less fertilizers, orincreased yields gained by implementing the same levels of fertilizers.Thus, improved NUE or FUE has a direct effect on plant yield in thefield.

The term “plant” as used herein encompasses whole plants, ancestors andprogeny of the plants and plant parts, including seeds, shoots, stems,roots (including tubers), and isolated plant cells, tissues and organs.The plant may be in any form including suspension cultures, embryos,meristematic regions, callus tissue, leaves, gametophytes, sporophytes,pollen, and microspores.

As used herein the phrase “plant cell” refers to plant cells which arederived and isolated from disintegrated plant cell tissue or plant cellcultures.

As used herein the phrase “plant cell culture” refers to any type ofnative (naturally occurring) plant cells, plant cell lines andgenetically modified plant cells, which are not assembled to form acomplete plant, such that at least one biological structure of a plantis not present. Optionally, the plant cell culture of this aspect of thepresent invention may comprise a particular type of a plant cell or aplurality of different types of plant cells. It should be noted thatoptionally plant cultures featuring a particular type of plant cell maybe originally derived from a plurality of different types of such plantcells.

Any commercially or scientifically valuable plant is envisaged inaccordance with some embodiments of the invention. Plants that areparticularly useful in the methods of the invention include all plantswhich belong to the super family Viridiplantae, in particularmonocotyledonous and dicotyledonous plants including a fodder or foragelegume, ornamental plant, food crop, tree, or shrub selected from thelist comprising Acacia spp., Acer spp., Actinidia spp., Aesculus spp.,Agathis australis, Albizia amara, Alsophila tricolor, Andropogon spp.,Arachis spp, Areca catechu, Astelia fragrans, Astragalus cicer, Baikiaeaplurijuga, Betula spp., Brassica spp., Bruguiera gymnorrhiza, Burkeaafricana, Butea frondosa, Cadaba farinosa, Calliandra spp, Camelliasinensis, Canna indica, Capsicum spp., Cassia spp., Centroema pubescens,Chacoomeles spp., Cinnamomum cassia, Coffea arabica, Colophospermummopane, Coronillia varia, Cotoneaster serotina, Crataegus spp., Cucumisspp., Cupressus spp., Cyathea dealbata, Cyclonia oblonga, Cryptomeriajaponica, Cymbopogon spp., Cynthea dealbata, Cyclonia oblonga, Dalbergiamonetaria, Davallia divaricata, Desmodium spp., Dicksonia squarosa,Dibeteropogon amplectens, Dioclea spp, Dolichos spp., Dorycnium rectum,Echinochloa pyramidalis, Ehraffia spp., Eleusine coracana, Eragrestisspp., Erythrina spp., Eucalyptus spp., Euclea schimperi, Eulaliavi/losa, Pagopyrum spp., Feijoa sellowlana, Fragaria spp., Flemingiaspp, Freycinetia banksli, Geranium thunbergii, GinAgo biloba, Glycinejavanica, Gliricidia spp, Gossypium hirsutum, Grevillea spp., Guibourtiacoleosperma, Hedysarum spp., Hemaffhia altissima, Heteropogon contoffus,Hordeum vulgare, Hyparrhenia rufa, Hypericum erectum, Hypeffheliadissolute, Indigo incamata, Iris spp., Leptarrhena pyrolifolia,Lespediza spp., Lettuca spp., Leucaena leucocephala, Loudetia simplex,Lotonus bainesli, Lotus spp., Macrotyloma axillare, Malus spp., Manihotesculenta, Medicago saliva, Metasequoia glyptostroboides, Musasapientum, Nicotianum spp., Onobrychis spp., Ornithopus spp., Oryzaspp., Peltophorum africanum, Pennisetum spp., Persea gratissima, Petuniaspp., Phaseolus spp., Phoenix canariensis, Phormium cookianum, Photiniaspp., Picea glauca, Pinus spp., Pisum sativam, Podocarpus totara,Pogonarthria fleckii, Pogonaffhria squarrosa, Populus spp., Prosopiscineraria, Pseudotsuga menziesii, Pterolobium stellatum, Pyrus communis,Quercus spp., Rhaphiolepsis umbellata, Rhopalostylis sapida, Rhusnatalensis, Ribes grossularia, Ribes spp., Robinia pseudoacacia, Rosaspp., Rubus spp., Salix spp., Schyzachyrium sanguineum, Sciadopitysvefficillata, Sequoia sempervirens, Sequoiadendron giganteum, Sorghumbicolor, Spinacia spp., Sporobolus fimbriatus, Stiburus alopecuroides,Stylosanthos humilis, Tadehagi spp, Taxodium distichum, Themedatriandra, Trifolium spp., Triticum spp., Tsuga heterophylla, Vacciniumspp., Vicia spp., Vitis vinifera, Watsonia pyramidata, Zantedeschiaaethiopica, Zea mays, amaranth, artichoke, asparagus, broccoli, Brusselssprouts, cabbage, canola, carrot, cauliflower, celery, collard greens,flax, kale, lentil, oilseed rape, okra, onion, potato, rice, soybean,straw, sugar beet, sugar cane, sunflower, tomato, squash tea, maize,wheat, barley, rye, oat, peanut, pea, lentil and alfalfa, cotton,rapeseed, canola, pepper, sunflower, tobacco, eggplant, eucalyptus, atree, an ornamental plant, a perennial grass and a forage crop.Alternatively algae and other non-Viridiplantae can be used for themethods of the present invention.

According to some embodiments of the invention, the plant used by themethod of the invention is a crop plant including, but not limited to,cotton, Brassica vegetables, oilseed rape, sesame, olive tree, palm oil,banana, wheat, corn or maize, barley, alfalfa, peanuts, sunflowers,rice, oats, sugarcane, soybean, turf grasses, barley, rye, sorghum,sugar cane, chicory, lettuce, tomato, zucchini, bell pepper, eggplant,cucumber, melon, watermelon, beans, hibiscus, okra, apple, rose,strawberry, chili, garlic, pea, lentil, canola, mums, arabidopsis,broccoli, cabbage, beet, quinoa, spinach, squash, onion, leek, tobacco,potato, sugarbeet, papaya, pineapple, mango, Arabidopsis thaliana, andalso plants used in horticulture, floriculture or forestry, such as, butnot limited to, poplar, fir, eucalyptus, pine, an ornamental plant, aperennial grass and a forage crop, coniferous plants, moss, algae, aswell as other plants listed in World Wide Web (dot) nationmaster (dot)com/encyclopedia/Plantae.

According to a specific embodiment of the present invention, the plantcomprises soy.

As used herein, the phrase “exogenous polynucleotide” refers to aheterologous nucleic acid sequence which may not be naturally expressedwithin the plant or which overexpression [i.e., expression above thatfound in the control non-transformed plant (e.g., wild type) grown underthe same conditions and being of the same developmental stage] in theplant is desired. The exogenous polynucleotide may be introduced intothe plant in a stable or transient manner, so as to produce aribonucleic acid (RNA) molecule. It should be noted that the exogenouspolynucleotide may comprise a nucleic acid sequence which is identicalor partially identical (homologous) to an endogenous nucleic acidsequence of the plant.

As mentioned, the present teachings are based on the identification ofmiRNA sequences which regulate the tolerance of plants to abioticstress.

According to some embodiments the exogenous polynucleotide encodes amiRNA or a precursor thereof.

As used herein, the phrase “microRNA (also referred to hereininterchangeably as “miRNA” or “miR”) or a precursor thereof” refers to amicroRNA (miRNA) molecule acting as a post-transcriptional regulator.Typically, the miRNA molecules are RNA molecules of about 20 to 22nucleotides in length which can be loaded into a RISC complex and whichdirect the cleavage of another RNA molecule, wherein the other RNAmolecule comprises a nucleotide sequence essentially complementary tothe nucleotide sequence of the miRNA molecule.

Typically, a miRNA molecule is processed from a “pre-miRNA” or as usedherein a precursor of a pre-miRNA molecule by proteins, such as DCLproteins, present in any plant cell and loaded onto a RISC complex whereit can guide the cleavage of the target RNA molecules.

Pre-microRNA molecules are typically processed from pri-microRNAmolecules (primary transcripts). The single stranded RNA segmentsflanking the pre-microRNA are important for processing of the pri-miRNAinto the pre-miRNA. The cleavage site appears to be determined by thedistance from the stem-ssRNA junction (Han et al. 2006, Cell 125,887-901, 887-901).

As used herein, a “pre-miRNA” molecule is an RNA molecule of about 100to about 200 nucleotides, preferably about 100 to about 130 nucleotideswhich can adopt a secondary structure comprising a double stranded RNAstem and a single stranded RNA loop (also referred to as “hairpin”) andfurther comprising the nucleotide sequence of the miRNA (and itscomplement sequence) in the double stranded RNA stem. According to aspecific embodiment, the miRNA and its complement are located about 10to about 20 nucleotides from the free ends of the miRNA double strandedRNA stem. The length and sequence of the single stranded loop region arenot critical and may vary considerably, e.g. between 30 and 50 nt inlength. The complementarity between the miRNA and its complement neednot be perfect and about 1 to 3 bulges of unpaired nucleotides can betolerated. The secondary structure adopted by an RNA molecule can bepredicted by computer algorithms conventional in the art such as mFOLD.The particular strand of the double stranded RNA stem from the pre-miRNAwhich is released by DCL activity and loaded onto the RISC complex isdetermined by the degree of complementarity at the 5′ end, whereby thestrand which at its 5′ end is the least involved in hydrogen boundingbetween the nucleotides of the different strands of the cleaved dsRNAstem is loaded onto the RISC complex and will determine the sequencespecificity of the target RNA molecule degradation. However, ifempirically the miRNA molecule from a particular synthetic pre-miRNAmolecule is not functional (because the “wrong” strand is loaded on theRISC complex), it will be immediately evident that this problem can besolved by exchanging the position of the miRNA molecule and itscomplement on the respective strands of the dsRNA stem of the pre-miRNAmolecule. As is known in the art, binding between A and U involving twohydrogen bounds, or G and U involving two hydrogen bounds is less strongthat between G and C involving three hydrogen bounds. Exemplary hairpinsequences are provided in Tables 1-8, below.

Naturally occurring miRNA molecules may be comprised within theirnaturally occurring pre-miRNA molecules but they can also be introducedinto existing pre-miRNA molecule scaffolds by exchanging the nucleotidesequence of the miRNA molecule normally processed from such existingpre-miRNA molecule for the nucleotide sequence of another miRNA ofinterest. The scaffold of the pre-miRNA can also be completelysynthetic. Likewise, synthetic miRNA molecules may be comprised within,and processed from, existing pre-miRNA molecule scaffolds or syntheticpre-miRNA scaffolds. Some pre-miRNA scaffolds may be preferred overothers for their efficiency to be correctly processed into the designedmicroRNAs, particularly when expressed as a chimeric gene wherein otherDNA regions, such as untranslated leader sequences or transcriptiontermination and polyadenylation regions are incorporated in the primarytranscript in addition to the pre-microRNA.

According to the present teachings, the miRNA molecules may be naturallyoccurring or synthetic.

Thus, the present teachings contemplate expressing an exogenouspolynucleotide having a nucleic acid sequence at least 90%, 91%, 92%,93%, 94%, 95%, 96%, 97%, 98% 99% or 100% identical to—NOs: 1-56, 80-125,11874, 262-2086, 11616, (mature), provided that they regulate ABST.

Alternatively or additionally, the present teachings contemplateexpressing an exogenous polynucleotide having a nucleic acid sequence atleast 65%, 50%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%,98% 99% or 100% identical to SEQ ID NOs: 1-56, 174-201, 80-125, 220-235,162-168, 256-259, 262-2086, 11616, 11615, 2087-3910, 3911, 11910-11939,11874-11904, 11956, 11957 or 11958 (mature and precursors Tables 1, 3,5, 7), provided that they regulate abiotic stress tolerance of theplant.

Tables 1, 3, 5 and 7 below illustrate exemplary miRNA sequences andprecursors thereof which over expression are associated with modulationof abiotic stress tolerance. It is noted that Tables 1-17 below areincorporated into the specification and are considered an integral partthereof.

The present invention envisages the use of homologous and orthologoussequences of the above miRNA molecules. At the precursor level use ofhomologous sequences can be done to a much broader extent. Thus, in suchprecursor sequences the degree of homology may be lower in all thosesequences not including the mature miRNA segment therein.

As used herein, the phrase “stem-loop precursor” refers to stem loopprecursor RNA structure from which the miRNA can be processed.

Pre-microRNA molecules are typically processed from pri-microRNAmolecules (primary transcripts). The single stranded RNA segmentsflanking the pre-microRNA are important for processing of the pri-miRNAinto the pre-miRNA. The cleavage site appears to be determined by thedistance from the stem-ssRNA junction (Han et al. 2006, Cell 125,887-901, 887-901).

As used herein, a “pre-miRNA” molecule is an RNA molecule of about 100to about 200 nucleotides, preferably about 100 to about 130 nucleotideswhich can adopt a secondary structure comprising a double stranded RNAstem and a single stranded RNA loop (also referred to as “hairpin”) andfurther comprising the nucleotide sequence of the miRNA (and itscomplement sequence) in the double stranded RNA stem. According to aspecific embodiment, the miRNA and its complement are located about 10to about 20 nucleotides from the free ends of the miRNA double strandedRNA stem. The length and sequence of the single stranded loop region arenot critical and may vary considerably, e.g. between 30 and 50 nt inlength. The complementarity between the miRNA and its complement neednot be perfect and about 1 to 3 bulges of unpaired nucleotides can betolerated. The secondary structure adopted by an RNA molecule can bepredicted by computer algorithms conventional in the art such as mFOLD.The particular strand of the double stranded RNA stem from the pre-miRNAwhich is released by DCL activity and loaded onto the RISC complex isdetermined by the degree of complementarity at the 5′ end, whereby thestrand which at its 5′ end is the least involved in hydrogen boundingbetween the nucleotides of the different strands of the cleaved dsRNAstem is loaded onto the RISC complex and will determine the sequencespecificity of the target RNA molecule degradation. However, ifempirically the miRNA molecule from a particular synthetic pre-miRNAmolecule is not functional (because the “wrong” strand is loaded on theRISC complex), it will be immediately evident that this problem can besolved by exchanging the position of the miRNA molecule and itscomplement on the respective strands of the dsRNA stem of the pre-miRNAmolecule. As is known in the art, binding between A and U involving twohydrogen bounds, or G and U involving two hydrogen bounds is less strongthat between G and C involving three hydrogen bounds.

Thus, according to a specific embodiment, the exogenous polynucleotideencodes a stem-loop precursor of the nucleic acid sequence. Such astem-loop precursor can be at least about 60%, at least about 65%, atleast about 70%, at least about 75%, at least about 80%, at least about85%, at least about 90%, at least about 95% or more identical to SEQ IDNOs: SEQ ID NO: 174-201, 220-235, 256-259, 2087-3910, 3911, 11910-11939,11615, 11875-11904, 11956, 11957 or 11958 (homologs precursor), providedthat it regulates abiotic stress tolerance.

Identity (e.g., percent identity) can be determined using any homologycomparison software, including for example, the BlastN software of theNational Center of Biotechnology Information (NCBI) such as by usingdefault parameters.

Homology (e.g., percent homology, identity+similarity) can be determinedusing any homology comparison software, including for example, theTBLASTN software of the National Center of Biotechnology Information(NCBI) such as by using default parameters.

According to some embodiments of the invention, the term “homology” or“homologous” refers to identity of two or more nucleic acid sequences;or identity of two or more amino acid sequences.

Homologous sequences include both orthologous and paralogous sequences.The term “paralogous” relates to gene-duplications within the genome ofa species leading to paralogous genes. The term “orthologous” relates tohomologous genes in different organisms due to ancestral relationship.

One option to identify orthologues in monocot plant species is byperforming a reciprocal blast search. This may be done by a first blastinvolving blasting the sequence-of-interest against any sequencedatabase, such as the publicly available NCBI database which may befound at: Hypertext Transfer Protocol://World Wide Web (dot) ncbi (dot)nlm (dot) nih (dot) gov. The blast results may be filtered. Thefull-length sequences of either the filtered results or the non-filteredresults are then blasted back (second blast) against the sequences ofthe organism from which the sequence-of-interest is derived. The resultsof the first and second blasts are then compared. An orthologue isidentified when the sequence resulting in the highest score (best hit)in the first blast identifies in the second blast the query sequence(the original sequence-of-interest) as the best hit. Using the samerational a paralogue (homolog to a gene in the same organism) is found.In case of large sequence families, the ClustalW program may be used[Hypertext Transfer Protocol://World Wide Web (dot) ebi (dot) ac (dot)uk/Tools/clustalw2/index (dot) html], followed by a neighbor-joiningtree (Hypertext Transfer Protocol://en (dot) wikipedia (dot)org/wiki/Neighbor-joining) which helps visualizing the clustering.

As mentioned, the present inventors have also identified RNAi sequenceswhich are down regulated under abiotic stress conditions.

Thus, according to an aspect of the invention there is provided a methodof improving abiotic stress tolerance, nitrogen use efficiency, biomass,vigor or yield of a plant, the method comprising expressing within theplant an exogenous polynucleotide which downregulates an activity orexpression of a gene encoding a miRNA molecule having a nucleic acidsequence at least 80%, 85% or preferably 90%, 95% or even 100% identicalto the sequence selected from the group consisting of SEQ ID NOs: 57-79,202-219, 126-161, 236-255, 169-173, 260-261, 3953-5114, 11905-11909,11940-11955, 11959-11961, 5117-6277 or 6278 (Tables 2, 4, 6 and 8),thereby improving abiotic stress tolerance, nitrogen use efficiency,biomass, vigor or yield of a plant

There are various approaches to down regulate miRNA sequences.

As used herein the term “down-regulation” refers to reduced activity orexpression of the miRNA (at least 10%, 20%, 30%, 50%, 60%, 70%, 80%, 90%or 100% reduction in activity or expression) as compared to its activityor expression in a plant of the same species and the same developmentalstage not expressing the exogenous polynucleotide.

Nucleic acid agents that down-regulate miR activity include, but are notlimited to, a target mimic, a micro-RNA resistant gene and a miRNAinhibitor.

The target mimic or micro-RNA resistant target is essentiallycomplementary to the microRNA provided that one or more of followingmismatches are allowed:

(a) a mismatch between the nucleotide at the 5′ end of the microRNA andthe corresponding nucleotide sequence in the target mimic or micro-RNAresistant target;

(b) a mismatch between any one of the nucleotides in position 1 toposition 9 of the microRNA and the corresponding nucleotide sequence inthe target mimic or micro-RNA resistant target; or

(c) three mismatches between any one of the nucleotides in position 12to position 21 of the microRNA and the corresponding nucleotide sequencein the target mimic or micro-RNA resistant target provided that thereare no more than two consecutive mismatches.

The target mimic RNA is essentially similar to the target RNA modifiedto render it resistant to miRNA induced cleavage, e.g. by modifying thesequence thereof such that a variation is introduced in the nucleotideof the target mimic sequence complementary to the nucleotides 10 or 11of the miRNA resulting in a mismatch.

Alternatively, a microRNA-resistant target may be implemented. Thus, asilent mutation may be introduced in the microRNA binding site of thetarget gene so that the DNA and resulting RNA sequences are changed in away that prevents microRNA binding, but the amino acid sequence of theprotein is unchanged. Thus, a new sequence can be synthesized instead ofthe existing binding site, in which the DNA sequence is changed,resulting in lack of miRNA binding to its target.

Tables 14-17 below provide non-limiting examples of target mimics andtarget resistant sequences that can be used to down-regulate theactivity of the miRs of the invention. According to a specificembodiment, the target mimic is listed in any one of the sequences ofTable 7. According to a specific embodiment, the mir-resistant targetsequence is listed in any one of the sequences of Table 15.

According to a specific embodiment, the target mimic or micro-RNAresistant target is linked to the promoter naturally associated with thepre-miRNA recognizing the target gene and introduced into the plantcell. In this way, the miRNA target mimic or micro-RNA resistant targetRNA will be expressed under the same circumstances as the miRNA and thetarget mimic or micro-RNA resistant target RNA will substitute for thenon-target mimic/micro-RNA resistant target RNA degraded by the miRNAinduced cleavage.

Non-functional miRNA alleles or miRNA resistant target genes may also beintroduced by homologous recombination to substitute the miRNA encodingalleles or miRNA sensitive target genes.

Recombinant expression is effected by cloning the nucleic acid ofinterest (e.g., miRNA, target gene, silencing agent etc) into a nucleicacid expression construct under the expression of a plant promoter, asfurther described hereinbelow.

In other embodiments of the invention, synthetic single stranded nucleicacids are used as miRNA inhibitors. A miRNA inhibitor is typicallybetween about 17 to 25 nucleotides in length and comprises a 5′ to 3′sequence that is at least 90% complementary to the 5′ to 3′ sequence ofa mature miRNA. In certain embodiments, a miRNA inhibitor molecule is17, 18, 19, 20, 21, 22, 23, 24, or 25 nucleotides in length, or anyrange derivable therein. Moreover, a miRNA inhibitor has a sequence(from 5′ to 3′) that is or is at least 90, 91, 92, 93, 94, 95, 96, 97,98, 99, 99.1, 99.2, 99.3, 99.4, 99.5, 99.6, 99.7, 99.8, 99.9 or 100%complementary, or any range derivable therein, to the 5′ to 3′ sequenceof a mature miRNA, particularly a mature, naturally occurring miRNA.

While further reducing the present invention to practice, the presentinventors have identified gene targets for the differentially expressedmiRNA molecules. It is therefore contemplated, that gene targets ofthose miRNAs that are down regulated during stress should beoverexpressed in order to confer tolerance, while gene targets of thosemiRNAs that are up regulated during stress should be downregulated inthe plant in order to confer tolerance.

Thus, according to an aspect of the invention there is provided a methodof improving abiotic stress tolerance, nitrogen use efficiency, biomass,vigor or yield of a plant, the method comprising expressing within theplant an exogenous polynucleotide encoding a polypeptide having an aminoacid sequence at least 80%, 82%, 84%, 85%, 86%, 88%, 90%, 92%, 94%, 95%,96%, 97%, 98%, 99% or 100% homologous to SEQ ID NOs: 9591-10364 (genetargets of down regulated miRNAs, see Table 10), wherein the polypeptideis capable of regulating abiotic stress tolerance of the plant, therebyimproving abiotic stress tolerance, nitrogen use efficiency, biomass,vigor or yield of the plant.

Nucleic acid sequences (also referred to herein as polynucleotides) ofthe polypeptides of some embodiments of the invention may be optimizedfor expression in a specific plant host. Examples of such sequencemodifications include, but are not limited to, an altered G/C content tomore closely approach that typically found in the plant species ofinterest, and the removal of codons atypically found in the plantspecies commonly referred to as codon optimization.

The phrase “codon optimization” refers to the selection of appropriateDNA nucleotides for use within a structural gene or fragment thereofthat approaches codon usage within the plant of interest. Therefore, anoptimized gene or nucleic acid sequence refers to a gene in which thenucleotide sequence of a native or naturally occurring gene has beenmodified in order to utilize statistically-preferred orstatistically-favored codons within the plant. The nucleotide sequencetypically is examined at the DNA level and the coding region optimizedfor expression in the plant species determined using any suitableprocedure, for example as described in Sardana et al. (1996, Plant CellReports 15:677-681). In this method, the standard deviation of codonusage, a measure of codon usage bias, may be calculated by first findingthe squared proportional deviation of usage of each codon of the nativegene relative to that of highly expressed plant genes, followed by acalculation of the average squared deviation. The formula used is: 1SDCU=n=1 N [(Xn−Yn)/Yn]2/N, where Xn refers to the frequency of usage ofcodon n in highly expressed plant genes, where Yn to the frequency ofusage of codon n in the gene of interest and N refers to the totalnumber of codons in the gene of interest. A table of codon usage fromhighly expressed genes of dicotyledonous plants is compiled using thedata of Murray et al. (1989, Nuc Acids Res. 17:477-498).

One method of optimizing the nucleic acid sequence in accordance withthe preferred codon usage for a particular plant cell type is based onthe direct use, without performing any extra statistical calculations,of codon optimization tables such as those provided on-line at the CodonUsage Database through the NIAS (National Institute of AgrobiologicalSciences) DNA bank in Japan (www.kazusa.or.jp/codon/). The Codon UsageDatabase contains codon usage tables for a number of different species,with each codon usage table having been statistically determined basedon the data present in Genbank.

By using the above tables to determine the most preferred or mostfavored codons for each amino acid in a particular species (for example,rice), a naturally-occurring nucleotide sequence encoding a protein ofinterest can be codon optimized for that particular plant species. Thisis effected by replacing codons that may have a low statisticalincidence in the particular species genome with corresponding codons, inregard to an amino acid, that are statistically more favored. However,one or more less-favored codons may be selected to delete existingrestriction sites, to create new ones at potentially useful junctions(5′ and 3′ ends to add signal peptide or termination cassettes, internalsites that might be used to cut and splice segments together to producea correct full-length sequence), or to eliminate nucleotide sequencesthat may negatively effect mRNA stability or expression.

The naturally-occurring encoding nucleotide sequence may already, inadvance of any modification, contain a number of codons that correspondto a statistically-favored codon in a particular plant species.Therefore, codon optimization of the native nucleotide sequence maycomprise determining which codons, within the native nucleotidesequence, are not statistically-favored with regards to a particularplant, and modifying these codons in accordance with a codon usage tableof the particular plant to produce a codon optimized derivative. Amodified nucleotide sequence may be fully or partially optimized forplant codon usage provided that the protein encoded by the modifiednucleotide sequence is produced at a level higher than the proteinencoded by the corresponding naturally occurring or native gene.Construction of synthetic genes by altering the codon usage is describedin for example PCT Patent Application 93/07278.

Target genes which are contemplated according to the present teachingsare provided in the polynucleotide sequences which comprise nucleic acidsequences as set forth in the soy polynucleotides listed in Table 10).However the present teachings also relate to orthologs or homologs atleast about 60%, at least about 65%, at least about 70%, at least about75%, at least about 80%, at least about 85%, at least about 90%, or atleast about 95% or more identical or similar to SEQ ID NO: 10365-10963(polynucleotides listed in Table 10). Parameters for determining thelevel of identity are provided hereinbelow.

Alternatively or additionally, target genes which are contemplatedaccording to the present teachings are provided in the polypeptidesequences which comprise amino acid sequences as set forth in the soypolypeptides of Table 10). However the present teachings also relate toorthologs or homologs at least about 60%, at least about 65%, at leastabout 70%, at least about 75%, at least about 80%, at least about 85%,at least about 90%, or at least about 95% or more identical or similarto SEQ ID NO: 9591-10364 (Table 10).

As mentioned the present inventors have also identified genes whichdown-regulation may be done in order to improve their abiotic stresstolerance, NUE, biomass, vigor and yield.

Thus, according to an aspect of the invention there is provided a methodof improving abiotic stress tolerance, nitrogen use efficiency, biomass,vigor or yield of a plant, the method comprising expressing within theplant an exogenous polynucleotide which downregulates an activity orexpression of a polypeptide having an amino acid sequence at least 80%,85%, 90%, 95%, or 100% homologous to SEQ ID NOs: 6315-8129 (polypeptidesof Table 9), wherein the polypeptide is capable of regulating abioticstress tolerance of the plant, thereby improving abiotic stresstolerance, nitrogen use efficiency, biomass, vigor or yield of theplant.

Down regulation of activity or expression is by at least 10%, 20%, 30%,40%, 50%, 60%, 70%, 80%, 90% or even complete (100%) loss of activity orexpression. Assays for measuring gene expression can be effected at theprotein level (e.g., Western blot, ELISA) or at the mRNA level such asby RT-PCR.

According to a specific embodiment the amino acid sequence of the targetgene is as set forth in SEQ ID NOs: 6315-8129 of Table 9.

Alternatively or additionally, the amino acid sequence of the targetgene is encoded by a polynucleotide sequence as set forth in SEQ ID NOs:8130-9590 of Table 9.

Examples of polynucleotide downregulating agents that inhibit (alsoreferred to herein as inhibitors or nucleic acid (downregulating)agents) the expression of a target gene are given below.

1. Polynucleotide-Based Inhibition of Gene Expression.

It will be appreciated, that any of these methods when specificallyreferring to downregulating expression/activity of the target genes canbe used, at least in part, to downregulate expression or activity ofendogenous RNA molecules.

i. Sense Suppression/Cosuppression

In some embodiments of the invention, inhibition of the expression oftarget gene may be obtained by sense suppression or cosuppression. Forcosuppression, an expression cassette is designed to express an RNAmolecule corresponding to all or part of a messenger RNA encoding atarget gene in the “sense” orientation. Over-expression of the RNAmolecule can result in reduced expression of the native gene.Accordingly, multiple plant lines transformed with the cosuppressionexpression cassette are screened to identify those that show thegreatest inhibition of target gene expression.

The polynucleotide used for cosuppression may correspond to all or partof the sequence encoding the target gene, all or part of the 5′ and/or3′ untranslated region of a target transcript, or all or part of boththe coding sequence and the untranslated regions of a transcriptencoding the target gene. In some embodiments where the polynucleotidecomprises all or part of the coding region for the target gene, theexpression cassette is designed to eliminate the start codon of thepolynucleotide so that no protein product will be transcribed.

Cosuppression may be used to inhibit the expression of plant genes toproduce plants having undetectable protein levels for the proteinsencoded by these genes. See, for example, Broin, et al., (2002) PlantCell 15:1517-1532. Cosuppression may also be used to inhibit theexpression of multiple proteins in the same plant. Methods for usingcosuppression to inhibit the expression of endogenous genes in plantsare described in Flavell, et al., (1995) Proc. Natl. Acad. Sci. USA91:3590-3596; Jorgensen, et al., (1996) Plant Mol. Biol. 31:957-973;Johansen and Carrington, (2001) Plant Physiol. 126:930-938; Broin, etal., (2002) Plant Cell 15:1517-1532; Stoutjesdijk, et al., (2002) PlantPhysiol. 129:1723-1731; Yu, et al., (2003) Phytochemistry 63:753-763;and U.S. Pat. Nos. 5,035,323, 5,283,185 and 5,952,657; each of which isherein incorporated by reference. The efficiency of cosuppression may beincreased by including a poly-dt region in the expression cassette at aposition 3′ to the sense sequence and 5′ of the polyadenylation signal.See, US Patent Publication Number 20020058815, herein incorporated byreference. Typically, such a nucleotide sequence has substantialsequence identity to the sequence of the transcript of the endogenousgene, optimally greater than about 65% sequence identity, more optimallygreater than about 85% sequence identity, most optimally greater thanabout 95% sequence identity. See, U.S. Pat. Nos. 5,283,185 and5,035,323; herein incorporated by reference.

Transcriptional gene silencing (TGS) may be accomplished through use ofhpRNA constructs wherein the inverted repeat of the hairpin sharessequence identity with the promoter region of a gene to be silenced.Processing of the hpRNA into short RNAs which can interact with thehomologous promoter region may trigger degradation or methylation toresult in silencing. (Aufsatz, et al., (2002) PNAS 99(4):16499-16506;Mette, et al., (2000) EMBO J. 19(19):5194-5201)

ii. Antisense Suppression

In some embodiments of the invention, inhibition of the expression ofthe target gene may be obtained by antisense suppression. For antisensesuppression, the expression cassette is designed to express an RNAmolecule complementary to all or part of a messenger RNA encoding thetarget gene. Over-expression of the antisense RNA molecule can result inreduced expression of the native gene. Accordingly, multiple plant linestransformed with the antisense suppression expression cassette arescreened to identify those that show the greatest inhibition of targetgene expression.

The polynucleotide for use in antisense suppression may correspond toall or part of the complement of the sequence encoding the target gene,all or part of the complement of the 5′ and/or 3′ untranslated region ofthe target gene transcript, or all or part of the complement of both thecoding sequence and the untranslated regions of a transcript encodingthe target gene. In addition, the antisense polynucleotide may be fullycomplementary (i.e., 100% identical to the complement of the targetsequence) or partially complementary (i.e., less than 100% identical tothe complement of the target sequence) to the target sequence. Antisensesuppression may be used to inhibit the expression of multiple proteinsin the same plant. Furthermore, portions of the antisense nucleotidesmay be used to disrupt the expression of the target gene. Generally,sequences of at least 50 nucleotides, 100 nucleotides, 200 nucleotides,300, 500, 550 or greater may be used. Methods for using antisensesuppression to inhibit the expression of endogenous genes in plants aredescribed, for example, in Liu, et al., (2002) Plant Physiol.129:1732-1753 and U.S. Pat. No. 5,759,829, which is herein incorporatedby reference. Efficiency of antisense suppression may be increased byincluding a poly-dT region in the expression cassette at a position 3′to the antisense sequence and 5′ of the polyadenylation signal. See, USPatent Publication Number 20020058815.

iii. Double-Stranded RNA Interference

In some embodiments of the invention, inhibition of the expression of atarget gene may be obtained by double-stranded RNA (dsRNA) interference.For dsRNA interference, a sense RNA molecule like that described abovefor cosuppression and an antisense RNA molecule that is fully orpartially complementary to the sense RNA molecule are expressed in thesame cell, resulting in inhibition of the expression of thecorresponding endogenous messenger RNA.

Expression of the sense and antisense molecules can be accomplished bydesigning the expression cassette to comprise both a sense sequence andan antisense sequence. Alternatively, separate expression cassettes maybe used for the sense and antisense sequences. Multiple plant linestransformed with the dsRNA interference expression cassette orexpression cassettes are then screened to identify plant lines that showthe greatest inhibition of target gene expression. Methods for usingdsRNA interference to inhibit the expression of endogenous plant genesare described in Waterhouse, et al., (1998) Proc. Natl. Acad. Sci. USA95:13959-13965, Liu, et al., (2002) Plant Physiol. 129:1732-1753, and WO99/59029, WO 99/53050, WO 99/61631, and WO 00/59035;

iv. Hairpin RNA Interference and Intron-Containing Hairpin RNAInterference

In some embodiments of the invention, inhibition of the expression ofone or more target gene may be obtained by hairpin RNA (hpRNA)interference or intron-containing hairpin RNA (ihpRNA) interference.These methods are highly efficient at downregulating the expression ofendogenous genes. See, Waterhouse and Helliwell, (2003) Nat. Rev. Genet.5:29-38 and the references cited therein.

For hpRNA interference, the expression cassette is designed to expressan RNA molecule that hybridizes with itself to form a hairpin structurethat comprises a single-stranded loop region and a base-paired stem. Thebase-paired stem region comprises a sense sequence corresponding to allor part of the endogenous messenger RNA encoding the gene whoseexpression is to be inhibited, and an antisense sequence that is fullyor partially complementary to the sense sequence. Thus, the base-pairedstem region of the molecule generally determines the specificity of theRNA interference. hpRNA molecules are highly efficient at inhibiting theexpression of endogenous genes, and the RNA interference they induce isinherited by subsequent generations of plants. See, for example, Chuangand Meyerowitz, (2000) Proc. Natl. Acad. Sci. USA 97:5985-5990;Stoutjesdijk, et al., (2002) Plant Physiol. 129:1723-1731; andWaterhouse and Helliwell, (2003) Nat. Rev. Genet. 5:29-38. Methods forusing hpRNA interference to inhibit or silence the expression of genesare described, for example, in Chuang and Meyerowitz, (2000) Proc. Natl.Acad. Sci. USA 97:5985-5990; Stoutjesdijk, et al., (2002) Plant Physiol.129:1723-1731; Waterhouse and Helliwell, (2003) Nat. Rev. Genet.5:29-38; Pandolfini, et al., BMC Biotechnology 3:7, and US PatentPublication Number 20030175965; each of which is herein incorporated byreference. A transient assay for the efficiency of hpRNA constructs tosilence gene expression in vivo has been described by Panstruga, et al.,(2003) Mol. Biol. Rep. 30:135-150, herein incorporated by reference.

For ihpRNA, the interfering molecules have the same general structure asfor hpRNA, but the RNA molecule additionally comprises an intron that iscapable of being spliced in the cell in which the ihpRNA is expressed.The use of an intron minimizes the size of the loop in the hairpin RNAmolecule following splicing, and this increases the efficiency ofinterference. See, for example, Smith, et al., (2000) Nature507:319-320. In fact, Smith, et al., show 100% suppression of endogenousgene expression using ihpRNA-mediated interference. Methods for usingihpRNA interference to inhibit the expression of endogenous plant genesare described, for example, in Smith, et al., (2000) Nature 507:319-320;Wesley, et al., (2001) Plant J. 27:584, 1-3, 590; Wang and Waterhouse,(2001) Curr. Opin. Plant Biol. 5:156-150; Waterhouse and Helliwell,(2003) Nat. Rev. Genet. 5:29-38; Helliwell and Waterhouse, (2003)Methods 30:289-295, and US Patent Publication Number 20030180955, eachof which is herein incorporated by reference.

The expression cassette for hpRNA interference may also be designed suchthat the sense sequence and the antisense sequence do not correspond toan endogenous RNA. In this embodiment, the sense and antisense sequenceflank a loop sequence that comprises a nucleotide sequence correspondingto all or part of the endogenous messenger RNA of the target gene. Thus,it is the loop region that determines the specificity of the RNAinterference. See, for example, WO 02/00905, herein incorporated byreference.

v. Amplicon-Mediated Interference

Amplicon expression cassettes comprise a plant virus-derived sequencethat contains all or part of the target gene but generally not all ofthe genes of the native virus. The viral sequences present in thetranscription product of the expression cassette allow the transcriptionproduct to direct its own replication. The transcripts produced by theamplicon may be either sense or antisense relative to the targetsequence (i.e., the messenger RNA for target gene). Methods of usingamplicons to inhibit the expression of endogenous plant genes aredescribed, for example, in Angell and Baulcombe, (1997) EMBO J.16:3675-3685, Angell and Baulcombe, (1999) Plant J. 20:357-362, and U.S.Pat. No. 6,656,805, each of which is herein incorporated by reference.

vi. Ribozymes

In some embodiments, the polynucleotide expressed by the expressioncassette of the invention is catalytic RNA or has ribozyme activityspecific for the messenger RNA of target gene. Thus, the polynucleotidecauses the degradation of the endogenous messenger RNA, resulting inreduced expression of the target gene. This method is described, forexample, in U.S. Pat. No. 5,987,071, herein incorporated by reference.

2. Gene Disruption

In some embodiments of the present invention, the activity of a miRNA ora target gene is reduced or eliminated by disrupting the gene encodingthe target polypeptide. The gene encoding the target polypeptide may bedisrupted by any method known in the art. For example, in oneembodiment, the gene is disrupted by transposon tagging. In anotherembodiment, the gene is disrupted by mutagenizing plants using random ortargeted mutagenesis, and selecting for plants that have reducedresponse regulator activity.

Any of the nucleic acid agents described herein (for overexpression ordownregulation of either the target gene or the miRNA) can be providedto the plant as naked RNA or expressed from a nucleic acid expressionconstruct, where it is operably linked to a regulatory sequence.

According to a specific embodiment of the invention, there is provided anucleic acid construct comprising a nucleic acid sequence encoding anucleic acid agent (e.g., miRNA or a precursor thereof as describedherein, gene target or silencing agent), the nucleic acid sequence beingunder a transcriptional control of a regulatory sequence such as atissue specific promoter.

An exemplary nucleic acid construct which can be used for planttransformation include, the pORE E2 binary vector (FIG. 1) in which therelevant nucleic acid sequence is ligated under the transcriptionalcontrol of a promoter.

A coding nucleic acid sequence is “operably linked” or“transcriptionally linked to a regulatory sequence (e.g., promoter)” ifthe regulatory sequence is capable of exerting a regulatory effect onthe coding sequence linked thereto. Thus, the regulatory sequencecontrols the transcription of the miRNA or precursor thereof, genetarget or silencing agent.

The term “regulatory sequence”, as used herein, means any DNA, that isinvolved in driving transcription and controlling (i.e., regulating) thetiming and level of transcription of a given DNA sequence, such as a DNAcoding for a miRNA, precursor or inhibitor of same. For example, a 5′regulatory region (or “promoter region”) is a DNA sequence locatedupstream (i.e., 5′) of a coding sequence and which comprises thepromoter and the 5′-untranslated leader sequence. A 3′ regulatory regionis a DNA sequence located downstream (i.e., 3′) of the coding sequenceand which comprises suitable transcription termination (and/orregulation) signals, including one or more polyadenylation signals.

For the purpose of the invention, the promoter is a plant-expressiblepromoter. As used herein, the term “plant-expressible promoter” means aDNA sequence which is capable of controlling (initiating) transcriptionin a plant cell. This includes any promoter of plant origin, but alsoany promoter of non-plant origin which is capable of directingtranscription in a plant cell, i.e., certain promoters of viral orbacterial origin. Thus, any suitable promoter sequence can be used bythe nucleic acid construct of the present invention. According to someembodiments of the invention, the promoter is a constitutive promoter, atissue-specific promoter or an inducible promoter (e.g. an abioticstress-inducible promoter).

Suitable constitutive promoters include, for example, hydroperoxidelyase (HPL) promoter, CaMV 35S promoter (Odell et al, Nature313:810-812, 1985); Arabidopsis At6669 promoter (see PCT Publication No.WO04081173A2); Arabidopsis new At6669 promoter; maize Ubi 1 (Christensenet al., Plant Sol. Biol. 18:675-689, 1992); rice actin (McElroy et al.,Plant Cell 2:163-171, 1990); pEMU (Last et al, Theor. Appl. Genet.81:584, 1-3, 588, 1991); CaMV 19S (Nilsson et al, Physiol. Plant100:456-462, 1997); GOS2 (de Pater et al, Plant J November; 2(6):837-44,1992); ubiquitin (Christensen et al, Plant MoI. Biol. 18: 675-689,1992); Rice cyclophilin (Bucholz et al, Plant MoI Biol. 25(5):837-43,1994); Maize H3 histone (Lepetit et al, MoI. Gen. Genet. 231:276-285,1992); Actin 2 (An et al, Plant J. 10(1); 107-121, 1996) and SyntheticSuper MAS (Ni et al., The Plant Journal 7: 661-76, 1995). Otherconstitutive promoters include those in U.S. Pat. Nos. 5,659,026,5,608,149; 5,608,144; 5,604,121; 5,569,597: 5,466,785; 5,399,680;5,268,463; and 5,608,142.

Suitable tissue-specific promoters include, but not limited to,leaf-specific promoters [such as described, for example, by Yamamoto etal., Plant J. 12:255-265, 1997; Kwon et al., Plant Physiol. 105:357-67,1994; Yamamoto et al., Plant Cell Physiol. 35:773-778, 1994; Gotor etal., Plant J. 3:509-18, 1993; Orozco et al., Plant MoI. Biol.23:1129-1138, 1993; and Matsuoka et al., Proc. Natl. Acad. Sci. USA90:9586-9590, 1993], seed-preferred promoters [e.g., from seed specificgenes (Simon, et al., Plant MoI. Biol. 5. 191, 1985; Scofield, et al.,J. Biol. Chem. 262: 12202, 1987; Baszczynski, et al., Plant MoI. Biol.14: 633, 1990), Brazil Nut albumin (Pearson' et al., Plant MoI. Biol.18: 235-245, 1992), legumin (Ellis, et al. Plant MoI. Biol. 10: 203-214,1988), Glutelin (rice) (Takaiwa, et al., MoI. Gen. Genet. 208: 15-22,1986; Takaiwa, et al., FEBS Letts. 221:43-47, 1987), Zein (Matzke etal., Plant MoI Biol, 143)323-32 1990), napA (Stalberg, et al., Planta199: 515-519, 1996), Wheat SPA (Albani et al, Plant Cell, 9: 171-184,1997), sunflower oleosin (Cummins, et al, Plant MoI. Biol. 19: 873-876,1992)], endosperm specific promoters [e.g., wheat LMW and HMW,glutenin-1 (MoI Gen Genet 216:81-90, 1989; NAR 17:461-2), wheat a, b andg gliadins (EMBO3: 1409-15, 1984), Barley ltrl promoter, barley Bl, C, Dhordein (Theor Appl Gen 98:1253-62, 1999; Plant J 4:343-55, 1993; MoIGen Genet. 250:750-60, 1996), Barley DOF (Mena et al., The PlantJournal, 116(1): 53-62, 1998), Biz2 (EP99106056.7), Synthetic promoter(Vicente-Carbajosa et al., Plant J. 13: 629-640, 1998), rice prolaminNRP33, rice-globulin GIb-I (Wu et al., Plant Cell Physiology 39(8)885-889, 1998), rice alpha-globulin REB/OHP-1 (Nakase et al. Plant MoI.Biol. 33: 513-S22, 1997), rice ADP-glucose PP (Trans Res 6:157-68,1997), maize ESR gene family (Plant J 12:235-46, 1997), sorghumgamma-kafirin (PMB 32:1029-35, 1996); e.g., the Napin promoter], embryospecific promoters [e.g., rice OSH1 (Sato et al, Proc. Natl. Acad. Sci.USA, 93: 8117-8122), KNOX (Postma-Haarsma et al, Plant MoI. Biol.39:257-71, 1999), rice oleosin (Wu et at, J. Biochem., 123:386, 1998)],and flower-specific promoters [e.g., AtPRP4, chalene synthase (chsA)(Van der Meer, et al., Plant MoI. Biol. 15, 95-109, 1990), LAT52 (Twellet al., MoI. Gen Genet. 217:240-245; 1989), apetala-3]. Alsocontemplated are root-specific promoters such as the ROOTP promoterdescribed in Vissenberg K, et al. Plant Cell Physiol. 2005 January;46(1):192-200.

The nucleic acid construct of some embodiments of the invention canfurther include an appropriate selectable marker and/or an origin ofreplication.

The nucleic acid construct of some embodiments of the invention can beutilized to stably or transiently transform plant cells. In stabletransformation, the exogenous polynucleotide is integrated into theplant genome and as such it represents a stable and inherited trait. Intransient transformation, the exogenous polynucleotide is expressed bythe cell transformed but it is not integrated into the genome and assuch it represents a transient trait.

When naked RNA or DNA is introduced into a cell, the polynucleotides maybe synthesized using any method known in the art, including eitherenzymatic syntheses or solid-phase syntheses. These are especiallyuseful in the case of short polynucleotide sequences with or withoutmodifications as explained above. Equipment and reagents for executingsolid-phase synthesis are commercially available from, for example,Applied Biosystems. Any other means for such synthesis may also beemployed; the actual synthesis of the oligonucleotides is well withinthe capabilities of one skilled in the art and can be accomplished viaestablished methodologies as detailed in, for example: Sambrook, J. andRussell, D. W. (2001), “Molecular Cloning: A Laboratory Manual”;Ausubel, R. M. et al., eds. (1994, 1989), “Current Protocols inMolecular Biology,” Volumes I-III, John Wiley & Sons, Baltimore, Md.;Perbal, B. (1988), “A Practical Guide to Molecular Cloning,” John Wiley& Sons, New York; and Gait, M. J., ed. (1984), “OligonucleotideSynthesis”; utilizing solid-phase chemistry, e.g. cyanoethylphosphoramidite followed by deprotection, desalting, and purificationby, for example, an automated trityl-on method or HPLC.

There are various methods of introducing foreign genes into bothmonocotyledonous and dicotyledonous plants (Potrykus, L, Annu. Rev.Plant. Physiol, Plant. MoI. Biol. (1991) 42:205-225; Shimamoto et al.,Nature (1989) 338:274-276).

The principle methods of causing stable integration of exogenous DNAinto plant genomic DNA include two main approaches:

(i) Agrobacterium-mediated gene transfer (e.g., T-DNA usingAgrobacterium tumefaciens or Agrobacterium rhizogenes); see for example,Klee et al. (1987) Annu. Rev. Plant Physiol. 38:467-486; Klee and Rogersin Cell Culture and Somatic Cell Genetics of Plants, Vol. 6, MolecularBiology of Plant Nuclear Genes, eds. Schell, J., and Vasil, L. K.,Academic Publishers, San Diego, Calif. (1989) p. 2-25; Gatenby, in PlantBiotechnology, eds. Kung, S, and Arntzen, C. J., Butterworth Publishers,Boston, Mass. (1989) p. 93-112.

(ii) Direct DNA uptake: Paszkowski et al., in Cell Culture and SomaticCell Genetics of Plants, Vol. 6, Molecular Biology of Plant NuclearGenes eds. Schell, J., and Vasil, L. K., Academic Publishers, San Diego,Calif. (1989) p. 52-68; including methods for direct uptake of DNA intoprotoplasts, Toriyama, K. et al. (1988) Bio/Technology 6:1072-1074. DNAuptake induced by brief electric shock of plant cells: Zhang et al.Plant Cell Rep. (1988) 7:379-384. Fromm et al. Nature (1986)319:791-793. DNA injection into plant cells or tissues by particlebombardment, Klein et al. Bio/Technology (1988) 6:559-563; McCabe et al.Bio/Technology (1988) 6:923-926; Sanford, Physiol. Plant. (1990)79:206-209; by the use of micropipette systems: Neuhaus et al., Theor.Appl. Genet. (1987) 75:30-36; Neuhaus and Spangenberg, Physiol. Plant.(1990) 79:213-217; glass fibers or silicon carbide whiskertransformation of cell cultures, embryos or callus tissue, U.S. Pat. No.5,464,765 or by the direct incubation of DNA with germinating pollen,DeWet et al. in Experimental Manipulation of Ovule Tissue, eds. Chapman,G. P. and Mantell, S. H. and Daniels, W. Longman, London, (1985) p.197-209; and Ohta, Proc. Natl. Acad. Sci. USA (1986) 83:715-719.

The Agrobacterium system includes the use of plasmid vectors thatcontain defined DNA segments that integrate into the plant genomic DNA.Methods of inoculation of the plant tissue vary depending upon the plantspecies and the Agrobacterium delivery system. A widely used approach isthe leaf disc procedure which can be performed with any tissue explantthat provides a good source for initiation of whole plantdifferentiation. See, e.g., Horsch et al. in Plant Molecular BiologyManual A5, Kluwer Academic Publishers, Dordrecht (1988) p. 1-9. Asupplementary approach employs the Agrobacterium delivery system incombination with vacuum infiltration. The Agrobacterium system isespecially viable in the creation of transgenic dicotyledonous plants.

According to a specific embodiment of the present invention, theexogenous polynucleotide is introduced into the plant by infecting theplant with bacteria, such as using a floral dip transformation method(as described in further detail in Example 7, of the Examples sectionwhich follows).

There are various methods of direct DNA transfer into plant cells. Inelectroporation, the protoplasts are briefly exposed to a strongelectric field. In microinjection, the DNA is mechanically injecteddirectly into the cells using very small micropipettes. In microparticlebombardment, the DNA is adsorbed on microprojectiles such as magnesiumsulfate crystals or tungsten particles, and the microprojectiles arephysically accelerated into cells or plant tissues.

Following stable transformation plant propagation is exercised. The mostcommon method of plant propagation is by seed. Regeneration by seedpropagation, however, has the deficiency that due to heterozygositythere is a lack of uniformity in the crop, since seeds are produced byplants according to the genetic variances governed by Mendelian rules.Basically, each seed is genetically different and each will grow withits own specific traits. Therefore, it is preferred that the transformedplant be produced such that the regenerated plant has the identicaltraits and characteristics of the parent transgenic plant. For thisreason it is preferred that the transformed plant be regenerated bymicropropagation which provides a rapid, consistent reproduction of thetransformed plants.

Micropropagation is a process of growing new generation plants from asingle piece of tissue that has been excised from a selected parentplant or cultivar. The new generation plants which are produced aregenetically identical to, and have all of the characteristics of, theoriginal plant. Micropropagation allows mass production of quality plantmaterial in a short period of time and offers a rapid multiplication ofselected cultivars in the preservation of the characteristics of theoriginal transgenic or transformed plant. The advantages of cloningplants are the speed of plant multiplication and the quality anduniformity of plants produced.

Micropropagation is a multi-stage procedure that requires alteration ofculture medium or growth conditions between stages. Thus, themicropropagation process involves four basic stages: Stage one, initialtissue culturing; stage two, tissue culture multiplication; stage three,differentiation and plant formation; and stage four, greenhouseculturing and hardening. During stage one, initial tissue culturing, thetissue culture is established and certified contaminant-free. Duringstage two, the initial tissue culture is multiplied until a sufficientnumber of tissue samples are produced to meet production goals. Duringstage three, the tissue samples grown in stage two are divided and growninto individual plantlets. At stage four, the transformed plantlets aretransferred to a greenhouse for hardening where the plants' tolerance tolight is gradually increased so that it can be grown in the naturalenvironment.

Although stable transformation is presently preferred, transienttransformation of leaf cells, meristematic cells or the whole plant isalso envisaged by the present invention.

Transient transformation can be effected by any of the direct DNAtransfer methods described above or by viral infection using modifiedplant viruses.

Viruses that have been shown to be useful for the transformation ofplant hosts include CaMV, Tobacco mosaic virus (TMV), brome mosaic virus(BMV) and Bean Common Mosaic Virus (BV or BCMV). Transformation ofplants using plant viruses is described in U.S. Pat. No. 4,855,237 (beangolden mosaic virus; BGV), EP-A 67,553 (TMV), Japanese PublishedApplication No. 63-14693 (TMV), EPA 194,809 (BV), EPA 278,667 (BV); andGluzman, Y. et al., Communications in Molecular Biology: Viral Vectors,Cold Spring Harbor Laboratory, New York, pp. 172-189 (1988). Pseudovirusparticles for use in expressing foreign DNA in many hosts, includingplants are described in WO 87/06261. According to some embodiments ofthe invention, the virus used for transient transformations is avirulentand thus is incapable of causing severe symptoms such as reduced growthrate, mosaic, ring spots, leaf roll, yellowing, streaking, poxformation, tumor formation and pitting. A suitable avirulent virus maybe a naturally occurring avirulent virus or an artificially attenuatedvirus. Virus attenuation may be effected by using methods well known inthe art including, but not limited to, sub-lethal heating, chemicaltreatment or by directed mutagenesis techniques such as described, forexample, by Kurihara and Watanabe (Molecular Plant Pathology 4:259-269,2003), Galon et al. (1992), Atreya et al. (1992) and Huet et al. (1994).

Suitable virus strains can be obtained from available sources such as,for example, the American Type culture Collection (ATCC) or by isolationfrom infected plants. Isolation of viruses from infected plant tissuescan be effected by techniques well known in the art such as described,for example by Foster and Tatlor, Eds. “Plant Virology Protocols FromVirus Isolation to Transgenic Resistance (Methods in Molecular Biology(Humana Pr), VoI 81)”, Humana Press, 1998. Briefly, tissues of aninfected plant believed to contain a high concentration of a suitablevirus, preferably young leaves and flower petals, are ground in a buffersolution (e.g., phosphate buffer solution) to produce a virus infectedsap which can be used in subsequent inoculations.

Construction of plant RNA viruses for the introduction and expression ofnon-viral exogenous polynucleotide sequences in plants is demonstratedby the above references as well as by Dawson, W. O. et al, Virology(1989) 172:285-292; Takamatsu et al. EMBO J. (1987) 6:307-311; French etal. Science (1986) 231:1294-1297; Takamatsu et al. FEBS Letters (1990)269:73-76; and U.S. Pat. No. 5,316,931.

When the virus is a DNA virus, suitable modifications can be made to thevirus itself. Alternatively, the virus can first be cloned into abacterial plasmid for ease of constructing the desired viral vector withthe foreign DNA. The virus can then be excised from the plasmid. If thevirus is a DNA virus, a bacterial origin of replication can be attachedto the viral DNA, which is then replicated by the bacteria.Transcription and translation of this DNA will produce the coat proteinswhich will encapsidate the viral DNA. If the virus is an RNA virus, thevirus is generally cloned as a cDNA and inserted into a plasmid. Theplasmid is then used to make all of the constructions. The RNA virus isthen produced by transcribing the viral sequence of the plasmid andtranslation of the viral genes to produce the coat protein(s) whichencapsidate the viral RNA.

In one embodiment, a plant viral nucleic acid is provided in which thenative coat protein coding sequence has been deleted from a viralnucleic acid, a non-native plant viral coat protein coding sequence anda non-native promoter, preferably the subgenomic promoter of thenon-native coat protein coding sequence, capable of expression in theplant host, packaging of the recombinant plant viral nucleic acid, andensuring a systemic infection of the host by the recombinant plant viralnucleic acid, has been inserted. Alternatively, the coat protein genemay be inactivated by insertion of the non-native nucleic acid sequencewithin it, such that a protein is produced. The recombinant plant viralnucleic acid may contain one or more additional non-native subgenomicpromoters. Each non-native subgenomic promoter is capable oftranscribing or expressing adjacent genes or nucleic acid sequences inthe plant host and incapable of recombination with each other and withnative subgenomic promoters. Non-native (foreign) nucleic acid sequencesmay be inserted adjacent the native plant viral subgenomic promoter orthe native and a non-native plant viral subgenomic promoters if morethan one nucleic acid sequence is included. The non-native nucleic acidsequences are transcribed or expressed in the host plant under controlof the subgenomic promoter to produce the desired products.

In a second embodiment, a recombinant plant viral nucleic acid isprovided as in the first embodiment except that the native coat proteincoding sequence is placed adjacent one of the non-native coat proteinsubgenomic promoters instead of a non-native coat protein codingsequence.

In a third embodiment, a recombinant plant viral nucleic acid isprovided in which the native coat protein gene is adjacent itssubgenomic promoter and one or more non-native subgenomic promoters havebeen inserted into the viral nucleic acid. The inserted non-nativesubgenomic promoters are capable of transcribing or expressing adjacentgenes in a plant host and are incapable of recombination with each otherand with native subgenomic promoters. Non-native nucleic acid sequencesmay be inserted adjacent to the non-native subgenomic plant viralpromoters such that the sequences are transcribed or expressed in thehost plant under control of the subgenomic promoters to produce thedesired product.

In a fourth embodiment, a recombinant plant viral nucleic acid isprovided as in the third embodiment except that the native coat proteincoding sequence is replaced by a non-native coat protein codingsequence.

The viral vectors are encapsidated by the coat proteins encoded by therecombinant plant viral nucleic acid to produce a recombinant plantvirus. The recombinant plant viral nucleic acid or recombinant plantvirus is used to infect appropriate host plants. The recombinant plantviral nucleic acid is capable of replication in the host, systemicspread in the host, and transcription or expression of foreign gene(s)(isolated nucleic acid) in the host to produce the desired sequence.

In addition to the above, the nucleic acid molecule of the presentinvention can also be introduced into a chloroplast genome therebyenabling chloroplast expression.

A technique for introducing exogenous nucleic acid sequences to thegenome of the chloroplasts is known. This technique involves thefollowing procedures. First, plant cells are chemically treated so as toreduce the number of chloroplasts per cell to about one. Then, theexogenous nucleic acid is introduced via particle bombardment into thecells with the aim of introducing at least one exogenous nucleic acidmolecule into the chloroplasts. The exogenous nucleic acid is selectedsuch that it gets integrated into the chloroplast's genome viahomologous recombination which is readily effected by enzymes inherentto the chloroplast. To this end, the exogenous nucleic acid includes, inaddition to a gene of interest, at least one nucleic acid stretch whichis derived from the chloroplast's genome. In addition, the exogenousnucleic acid includes a selectable marker, which serves by sequentialselection procedures to ascertain that all or substantially all of thecopies of the chloroplast genomes following such selection will includethe exogenous nucleic acid. Further details relating to this techniqueare found in U.S. Pat. Nos. 4,945,050; and 5,693,507 which areincorporated herein by reference.

Regardless of the method of transformation, propagation or regeneration,the present invention also contemplates a transgenic plant exogenouslyexpressing the polynucleotide/nucleic acid agent of the invention.

According to a specific embodiment, the transgenic plant exogenouslyexpresses a polynucleotide having a nucleic acid sequence at least, 80%,85%, 90%, 95% or even 100% identical to SEQ ID NOs: 1-56, 11874,174-201, 80-125, 220-235, 162-168, 256-259, 262-2086, 2087-3910 11616,11615, 11910-11939, 11956-11958, 11875-11904 or 3911 (Tables 1, 3, 5 and7), wherein the nucleic acid sequence is capable of regulating abioticstress tolerance of the plant.

According to further embodiments, the exogenous polynucleotide encodes aprecursor of the nucleic acid sequence.

According to yet further embodiments, the stem-loop precursor is atleast 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95% or even 100% identical toSEQ ID NOs: 1-56, 11874, 174-201, 80-125, 220-235, 162-168, 256-259,262-2086, 2087-3910 11616, 11615, 11910-11939, 11956-11958, 11875-11904or 3911 (Tables 1, 3, 5 and 7). More specifically the exogenouspolynucleotide is selected from the group consisting of SEQ ID NO: 1-56,11874, 174-201, 80-125, 220-235, 162-168, 256-259, 262-2086, 2087-391011616, 11615, 11910-11939, 11956-11958, 11875-11904 or 3911 (precursorand mature sequences of upregulated Tables 1, 3, 5 and 7).

Alternatively, there is provided a transgenic plant exogenouslyexpressing a polynucleotide which downregulates an activity orexpression of a gene encoding a miRNA molecule having a nucleic acidsequence selected from the group consisting of SEQ ID NOs: 57-79,202-219, 126-161, 236-255, 169-173, 260-261, 3953-5114, 5117-6277,11905-11909, 11940-11955, 11959-11961 or 6278 (downregulated Tables 2,4, 6, 8) or homologs thereof which are at least at least 80%, 85%, 90%or 95% identical to SEQ ID NOs: 57-79, 202-219, 126-161, 236-255,169-173, 260-261, 3953-5114, 5117-6277, 11905-11909, 11940-11955,11959-11961 or 6278 (downregulated Tables 2, 4, 6 and 8).

More specifically, the transgenic plant expresses the nucleic acid agentof Tables 14 or 16. Alternatively, the transgenic plant expresses thenucleic acid agent of Tables 15 or 17.

It will be appreciated that the present teachings also relate to nucleicacid constructs and transgenic plants expressing same which comprise anucleic acid sequence at least 80%, 85%, 90%, 95% or even 100% identicalto SEQ ID NOs: 57-79, 202-219, 126-161, 236-255, 169-173, 260-261,3953-5114, 5117-6277, 11905-11909, 11940-11955, 11959-11961 or 6278(Tables 2, 4, 6 and 8), wherein the nucleic acid sequence is capable ofregulating abiotic stress tolerance of the plant.

Alternatively or additionally there is provided a transgenic plantexogenously expressing a polynucleotide encoding a polypeptide having anamino acid sequence at least 80%, 85%, 90%, 95% or even 100% homologousto SEQ ID NOs: 9591-10364 (polypeptides of Table 10), wherein thepolypeptide is capable of regulating abiotic stress tolerance of theplant.

Alternatively or additionally there is provided a transgenic plantexogenously expressing a polynucleotide encoding a polypeptide having anamino acid sequence at least 80%, 85%, 90%, 95% or even 100% homologousto SEQ ID NOs: 6315-8129 (polypeptides of Table 9), wherein thepolypeptide is capable of regulating abiotic stress tolerance of theplant.

Alternatively or additionally there is provided a transgenic plantexogenously expressing a polynucleotide which downregulates an activityor expression of a polypeptide having an amino acid sequence at least80%, 85%, 90%, 95% or even 100% homologous to SEQ ID NOs: 6315-10963(targets of Tables 9 and 10), wherein the polypeptide is capable ofregulating abiotic stress tolerance of the plant.

Also contemplated are hybrids of the above described transgenic plants.A “hybrid plant” refers to a plant or a part thereof resulting from across between two parent plants, wherein one parent is a geneticallyengineered plant of the invention (transgenic plant expressing anexogenous miRNA sequence or a precursor thereof). Such a cross can occurnaturally by, for example, sexual reproduction, or artificially by, forexample, in vitro nuclear fusion. Methods of plant breeding arewell-known and within the level of one of ordinary skill in the art ofplant biology.

Since abiotic stress tolerance, nitrogen use efficiency as well asyield, vigor or biomass of the plant can involve multiple genes actingadditively or in synergy (see, for example, in Quesda et al., PlantPhysiol. 130:951-063, 2002), the invention also envisages expressing aplurality of exogenous polynucleotides in a single host plant to therebyachieve superior effect on the efficiency of nitrogen use, yield, vigorand biomass of the plant.

Expressing a plurality of exogenous polynucleotides in a single hostplant can be effected by co-introducing multiple nucleic acidconstructs, each including a different exogenous polynucleotide, into asingle plant cell. The transformed cell can then be regenerated into amature plant using the methods described hereinabove. Alternatively,expressing a plurality of exogenous polynucleotides in a single hostplant can be effected by co-introducing into a single plant-cell asingle nucleic-acid construct including a plurality of differentexogenous polynucleotides. Such a construct can be designed with asingle promoter sequence which can transcribe a polycistronic messengerRNA including all the different exogenous polynucleotide sequences.Alternatively, the construct can include several promoter sequences eachlinked to a different exogenous polynucleotide sequence.

The plant cell transformed with the construct including a plurality ofdifferent exogenous polynucleotides can be regenerated into a matureplant, using the methods described hereinabove.

Alternatively, expressing a plurality of exogenous polynucleotides canbe effected by introducing different nucleic acid constructs, includingdifferent exogenous polynucleotides, into a plurality of plants. Theregenerated transformed plants can then be cross-bred and resultantprogeny selected for superior yield or tolerance traits as describedabove, using conventional plant breeding techniques.

Expression of the miRNAs of the present invention or precursors thereofcan be qualified using methods which are well known in the art such asthose involving gene amplification e.g., PCR or RT-PCR or Northern blotor in-situ hybrdization.

According to some embodiments of the invention, the plant expressing theexogenous polynucleotide(s) is grown under stress (nitrogen or abiotic)or normal conditions (e.g., biotic conditions and/or conditions withsufficient water, nutrients such as nitrogen and fertilizer). Suchconditions, which depend on the plant being grown, are known to thoseskilled in the art of agriculture, and are further, described above.

According to some embodiments of the invention, the method furthercomprises growing the plant expressing the exogenous polynucleotide(s)under abiotic stress or nitrogen limiting conditions. Non-limitingexamples of abiotic stress conditions include, water deprivation,drought, excess of water (e.g., flood, waterlogging), freezing, lowtemperature, high temperature, strong winds, heavy metal toxicity,anaerobiosis, nutrient deficiency, nutrient excess, salinity,atmospheric pollution, intense light, insufficient light, or UVirradiation, etiolation and atmospheric pollution.

Thus, the invention encompasses plants exogenously expressing thepolynucleotide(s), the nucleic acid constructs of the invention.

Methods of determining the level in the plant of the RNA transcribedfrom the exogenous polynucleotide are well known in the art and include,for example, Northern blot analysis, reverse transcription polymerasechain reaction (RT-PCR) analysis (including quantitative,semi-quantitative or real-time RT-PCR) and RNA-m situ hybridization.

The sequence information and annotations uncovered by the presentteachings can be harnessed in favor of classical breeding. Thus,sub-sequence data of those polynucleotides described above, can be usedas markers for marker assisted selection (MAS), in which a marker isused for indirect selection of a genetic determinant or determinants ofa trait of interest (e.g., tolerance to abiotic stress). Nucleic aciddata of the present teachings (DNA or RNA sequence) may contain or belinked to polymorphic sites or genetic markers on the genome such asrestriction fragment length polymorphism (RFLP), microsatellites andsingle nucleotide polymorphism (SNP), DNA fingerprinting (DFP),amplified fragment length polymorphism (AFLP), expression levelpolymorphism, and any other polymorphism at the DNA or RNA sequence.

Examples of marker assisted selections include, but are not limited to,selection for a morphological trait (e.g., a gene that affects form,coloration, male sterility or resistance such as the presence or absenceof awn, leaf sheath coloration, height, grain color, aroma of rice);selection for a biochemical trait (e.g., a gene that encodes a proteinthat can be extracted and observed; for example, isozymes and storageproteins); selection for a biological trait (e.g., pathogen races orinsect biotypes based on host pathogen or host parasite interaction canbe used as a marker since the genetic constitution of an organism canaffect its susceptibility to pathogens or parasites).

The polynucleotides described hereinabove can be used in a wide range ofeconomical plants, in a safe and cost effective manner.

Plant lines exogenously expressing the polynucleotide of the inventioncan be screened to identify those that show the greatest increase of thedesired plant trait.

Thus, according to an additional embodiment of the present invention,there is provided a method of evaluating a trait of a plant, the methodcomprising: (a) expressing in a plant or a portion thereof the nucleicacid construct; and (b) evaluating a trait of a plant as compared to awild type plant of the same type; thereby evaluating the trait of theplant.

Thus, the effect of the transgene (the exogenous polynucleotide) ondifferent plant characteristics may be determined any method known toone of ordinary skill in the art.

Thus, for example, tolerance to limiting nitrogen conditions may becompared in transformed plants {i.e., expressing the transgene) comparedto non-transformed (wild type) plants exposed to the same stressconditions (other stress conditions are contemplated as well, e.g. waterdeprivation, salt stress e.g. salinity, suboptimal temperatureosmoticstress, and the like), using the following assays.

Methods of qualifying plants as being tolerant or having improvedtolerance to abiotic stress or limiting nitrogen levels are well knownin the art and are further described hereinbelow.

Fertilizer use efficiency—To analyze whether the transgenic plants aremore responsive to fertilizers, plants are grown in agar plates or potswith a limited amount of fertilizer, as described, for example, inYanagisawa et al (Proc Natl Acad Sci USA. 2004; 101:7833-8). The plantsare analyzed for their overall size, time to flowering, yield, proteincontent of shoot and/or grain. The parameters checked are the overallsize of the mature plant, its wet and dry weight, the weight of theseeds yielded, the average seed size and the number of seeds producedper plant. Other parameters that may be tested are: the chlorophyllcontent of leaves (as nitrogen plant status and the degree of leafverdure is highly correlated), amino acid and the total protein contentof the seeds or other plant parts such as leaves or shoots, oil content,etc. Similarly, instead of providing nitrogen at limiting amounts,phosphate or potassium can be added at increasing concentrations. Again,the same parameters measured are the same as listed above. In this way,nitrogen use efficiency (NUE), phosphate use efficiency (PUE) andpotassium use efficiency (KUE) are assessed, checking the ability of thetransgenic plants to thrive under nutrient restraining conditions.

Nitrogen use efficiency—To analyze whether the transgenic plants (e.g.,Arabidopsis plants) are more responsive to nitrogen, plant are grown in0.75-3 millimolar (mM, nitrogen deficient conditions) or 10, 6-9 mM(optimal nitrogen concentration). Plants are allowed to grow foradditional 25 days or until seed production. The plants are thenanalyzed for their overall size, time to flowering, yield, proteincontent of shoot and/or grain/seed production. The parameters checkedcan be the overall size of the plant, wet and dry weight, the weight ofthe seeds yielded, the average seed size and the number of seedsproduced per plant. Other parameters that may be tested are: thechlorophyll content of leaves (as nitrogen plant status and the degreeof leaf greenness is highly correlated), amino acid and the totalprotein content of the seeds or other plant parts such as leaves orshoots and oil content. Transformed plants not exhibiting substantialphysiological and/or morphological effects, or exhibiting highermeasured parameters levels than wild-type plants, are identified asnitrogen use efficient plants.

Nitrogen Use efficiency assay using plantlets—The assay is doneaccording to Yanagisawa-S. et al. with minor modifications (“Metabolicengineering with Dofl transcription factor in plants: Improved nitrogenassimilation and growth under low-nitrogen conditions” Proc. Natl. Acad.Sci. USA 101, 7833-7838). Briefly, transgenic plants which are grown for7-10 days in 0.5×MS [Murashige-Skoog] supplemented with a selectionagent are transferred to two nitrogen-limiting conditions: MS media inwhich the combined nitrogen concentration (NH₄NO₃ and KNO₃) was 0.75 mM(nitrogen deficient conditions) or 6-15 mM (optimal nitrogenconcentration). Plants are allowed to grow for additional 30-40 days andthen photographed, individually removed from the Agar (the shoot withoutthe roots) and immediately weighed (fresh weight) for later statisticalanalysis. Constructs for which only T1 seeds are available are sown onselective media and at least 20 seedlings (each one representing anindependent transformation event) are carefully transferred to thenitrogen-limiting media. For constructs for which T2 seeds areavailable, different transformation events are analyzed. Usually, 20randomly selected plants from each event are transferred to thenitrogen-limiting media allowed to grow for 3-4 additional weeks andindividually weighed at the end of that period. Transgenic plants arecompared to control plants grown in parallel under the same conditions.Mock-transgenic plants expressing the uidA reporter gene (GUS) under thesame promoter or transgenic plants carrying the same promoter butlacking a reporter gene are used as control.

Nitrogen determination—The procedure for N (nitrogen) concentrationdetermination in the structural parts of the plants involves thepotassium persulfate digestion method to convert organic N to NO₃ ⁻(Purcell and King 1996 Argon. J. 88:111-113, the modified Cd⁻ mediatedreduction of NO₃ ⁻ to NO₂ ⁻ (Vodovotz 1996 Biotechniques 20:390-394) andthe measurement of nitrite by the Griess assay (Vodovotz 1996, supra).The absorbance values are measured at 550 nm against a standard curve ofNaNO₂. The procedure is described in details in Samonte et al. 2006Agron. J. 98:168-176.

Tolerance to abiotic stress (e.g. tolerance to drought or salinity) canbe evaluated by determining the differences in physiological and/orphysical condition, including but not limited to, vigor, growth, size,or root length, or specifically, leaf color or leaf area size of thetransgenic plant compared to a non-modified plant of the same speciesgrown under the same conditions. Other techniques for evaluatingtolerance to abiotic stress include, but are not limited to, measuringchlorophyll fluorescence, photosynthetic rates and gas exchange rates.Further assays for evaluating tolerance to abiotic stress are providedhereinbelow and in the Examples section which follows.

Drought tolerance assay—Soil-based drought screens are performed withplants overexpressing the polynucleotides detailed above. Seeds fromcontrol Arabidopsis plants, or other transgenic plants overexpressingnucleic acid of the invention are germinated and transferred to pots.Drought stress is obtained after irrigation is ceased. Transgenic andcontrol plants are compared to each other when the majority of thecontrol plants develop severe wilting. Plants are re-watered afterobtaining a significant fraction of the control plants displaying asevere wilting. Plants are ranked comparing to controls for each of twocriteria: tolerance to the drought conditions and recovery (survival)following re-watering.

Quantitative parameters of tolerance measured include, but are notlimited to, the average wet and dry weight, growth rate, leaf size, leafcoverage (overall leaf area), the weight of the seeds yielded, theaverage seed size and the number of seeds produced per plant.Transformed plants not exhibiting substantial physiological and/ormorphological effects, or exhibiting higher biomass than wild-typeplants, are identified as drought stress tolerant plants

Salinity tolerance assay—Transgenic plants with tolerance to high saltconcentrations are expected to exhibit better germination, seedlingvigor or growth in high salt. Salt stress can be effected in many wayssuch as, for example, by irrigating the plants with a hyperosmoticsolution, by cultivating the plants hydroponically in a hyperosmoticgrowth solution (e.g., Hoagland solution with added salt), or byculturing the plants in a hyperosmotic growth medium [e.g., 50%Murashige-Skoog medium (MS medium) with added salt]. Since differentplants vary considerably in their tolerance to salinity, the saltconcentration in the irrigation water, growth solution, or growth mediumcan be adjusted according to the specific characteristics of thespecific plant cultivar or variety, so as to inflict a mild or moderateeffect on the physiology and/or morphology of the plants (for guidelinesas to appropriate concentration see, Bernstein and Kafkafi, Root GrowthUnder Salinity Stress In: Plant Roots, The Hidden Half 3rd ed. Waisel Y,Eshel A and Kafkafi U. (editors) Marcel Dekker Inc., New York, 2002, andreference therein).

For example, a salinity tolerance test can be performed by irrigatingplants at different developmental stages with increasing concentrationsof sodium chloride (for example 50 mM, 150 mM, 300 mM NaCl) applied fromthe bottom and from above to ensure even dispersal of salt. Followingexposure to the stress condition the plants are frequently monitoreduntil substantial physiological and/or morphological effects appear inwild type plants. Thus, the external phenotypic appearance, degree ofchlorosis and overall success to reach maturity and yield progeny arecompared between control and transgenic plants. Quantitative parametersof tolerance measured include, but are not limited to, the average wetand dry weight, growth rate, leaf size, leaf coverage (overall leafarea), the weight of the seeds yielded, the average seed size and thenumber of seeds produced per plant. Transformed plants not exhibitingsubstantial physiological and/or morphological effects, or exhibitinghigher biomass than wild-type plants, are identified as abiotic stresstolerant plants.

Osmotic tolerance test—Osmotic stress assays (including sodium chlorideand PEG assays) are conducted to determine if an osmotic stressphenotype was sodium chloride-specific or if it was a general osmoticstress related phenotype. Plants which are tolerant to osmotic stressmay have more tolerance to drought and/or freezing. For salt and osmoticstress experiments, the medium is supplemented for example with 50 mM,100 mM, 200 mM NaCl or 15%, 20% or 25% PEG.

Cold stress tolerance—One way to analyze cold stress is as follows.Mature (25 day old) plants are transferred to 4° C. chambers for 1 or 2weeks, with constitutive light. Later on plants are moved back togreenhouse. Two weeks later damages from chilling period, resulting ingrowth retardation and other phenotypes, are compared between controland transgenic plants, by measuring plant weight (wet and dry), and bycomparing growth rates measured as time to flowering, plant size, yield,and the like.

Heat stress tolerance—One way to measure heat stress tolerance is byexposing the plants to temperatures above 34° C. for a certain period.Plant tolerance is examined after transferring the plants back to 22° C.for recovery and evaluation after 5 days relative to internal controls(non-transgenic plants) or plants not exposed to neither cold or heatstress.

The biomass, vigor and yield of the plant can also be evaluated usingany method known to one of ordinary skill in the art. Thus, for example,plant vigor can be calculated by the increase in growth parameters suchas leaf area, fiber length, rosette diameter, plant fresh weight, oilcontent, seed yield and the like per time.

As mentioned, the increase of plant yield can be determined by variousparameters. For example, increased yield of rice may be manifested by anincrease in one or more of the following: number of plants per growingarea, number of panicles per plant, number of spikelets per panicle,number of flowers per panicle, increase in the seed filling rate,increase in thousand kernel weight (1000-weight), increase oil contentper seed, increase starch content per seed, among others. An increase inyield may also result in modified architecture, or may occur because ofmodified architecture. Similarly, increased yield of soybean may bemanifested by an increase in one or more of the following: number ofplants per growing area, number of pods per plant, number of seeds perpod, increase in the seed filling rate, increase in thousand seed weight(1000-weight), reduce pod shattering, increase oil content per seed,increase protein content per seed, among others. An increase in yieldmay also result in modified architecture, or may occur because ofmodified architecture.

Thus, the present invention is of high agricultural value for increasingtolerance of plants to nitrogen deficiency or abiotic stress as well aspromoting the yield, biomass and vigor of commercially desired crops.

According to another embodiment of the present invention, there isprovided a food or feed comprising the plants or a portion thereof ofthe present invention.

In a further aspect the invention, the transgenic plants of the presentinvention or parts thereof are comprised in a food or feed product(e.g., dry, liquid, paste). A food or feed product is any ingestiblepreparation containing the transgenic plants, or parts thereof, of thepresent invention, or preparations made from these plants. Thus, theplants or preparations are suitable for human (or animal) consumption,i.e. the transgenic plants or parts thereof are more readily digested.Feed products of the present invention further include a oil or abeverage adapted for animal consumption.

It will be appreciated that the transgenic plants, or parts thereof, ofthe present invention may be used directly as feed products oralternatively may be incorporated or mixed with feed products forconsumption. Furthermore, the food or feed products may be processed orused as is. Exemplary feed products comprising the transgenic plants, orparts thereof, include, but are not limited to, grains, cereals, such asoats, e.g. black oats, barley, wheat, rye, sorghum, corn, vegetables,leguminous plants, especially soybeans, root vegetables and cabbage, orgreen forage, such as grass or hay.

As used herein the term “about” refers to ±10%.

The terms “comprises”, “comprising”, “includes”, “including”, “having”and their conjugates mean “including but not limited to”.

The term “consisting of” means “including and limited to”.

The term “consisting essentially of” means that the composition, methodor structure may include additional ingredients, steps and/or parts, butonly if the additional ingredients, steps and/or parts do not materiallyalter the basic and novel characteristics of the claimed composition,method or structure.

As used herein, the singular form “a”, “an” and “the” include pluralreferences unless the context clearly dictates otherwise. For example,the term “a compound” or “at least one compound” may include a pluralityof compounds, including mixtures thereof.

Throughout this application, various embodiments of this invention maybe presented in a range format. It should be understood that thedescription in range format is merely for convenience and brevity andshould not be construed as an inflexible limitation on the scope of theinvention. Accordingly, the description of a range should be consideredto have specifically disclosed all the possible subranges as well asindividual numerical values within that range. For example, descriptionof a range such as from 1 to 6 should be considered to have specificallydisclosed subranges such as from 1 to 3, from 1 to 4, from 1 to 5, from2 to 4, from 2 to 6, from 3 to 6 etc., as well as individual numberswithin that range, for example, 1, 2, 3, 4, 5, and 6. This appliesregardless of the breadth of the range.

Whenever a numerical range is indicated herein, it is meant to includeany cited numeral (fractional or integral) within the indicated range.The phrases “ranging/ranges between” a first indicate number and asecond indicate number and “ranging/ranges from” a first indicate number“to” a second indicate number are used herein interchangeably and aremeant to include the first and second indicated numbers and all thefractional and integral numerals therebetween.

As used herein the term “method” refers to manners, means, techniquesand procedures for accomplishing a given task including, but not limitedto, those manners, means, techniques and procedures either known to, orreadily developed from known manners, means, techniques and proceduresby practitioners of the chemical, pharmacological, biological,biochemical and medical arts.

It is appreciated that certain features of the invention, which are, forclarity, described in the context of separate embodiments, may also beprovided in combination in a single embodiment. Conversely, variousfeatures of the invention, which are, for brevity, described in thecontext of a single embodiment, may also be provided separately or inany suitable subcombination or as suitable in any other describedembodiment of the invention. Certain features described in the contextof various embodiments are not to be considered essential features ofthose embodiments, unless the embodiment is inoperative without thoseelements.

Various embodiments and aspects of the present invention as delineatedhereinabove and as claimed in the claims section below find experimentalsupport in the following examples.

EXAMPLES

Reference is now made to the following examples, which together with theabove descriptions illustrate some embodiments of the invention in a nonlimiting fashion.

Generally, the nomenclature used herein and the laboratory proceduresutilized in the present invention include molecular, biochemical,microbiological and recombinant DNA techniques. Such techniques arethoroughly explained in the literature. See, for example, “MolecularCloning: A laboratory Manual” Sambrook et al., (1989); “CurrentProtocols in Molecular Biology” Volumes I-III Ausubel, R. M., ed.(1994); Ausubel et al., “Current Protocols in Molecular Biology”, JohnWiley and Sons, Baltimore, Md. (1989); Perbal, “A Practical Guide toMolecular Cloning”, John Wiley & Sons, New York (1988); Watson et al.,“Recombinant DNA”, Scientific American Books, New York; Birren et al.(eds) “Genome Analysis: A Laboratory Manual Series”, Vols. 1-4, ColdSpring Harbor Laboratory Press, New York (1998); methodologies as setforth in U.S. Pat. Nos. 4,666,828; 4,683,202; 4,801,531; 5,192,659 and5,272,057; “Cell Biology: A Laboratory Handbook”, Volumes I-III Cellis,J. E., ed. (1994); “Current Protocols in Immunology” Volumes I-IIIColigan J. E., ed. (1994); Stites et al. (eds), “Basic and ClinicalImmunology” (8th Edition), Appleton & Lange, Norwalk, Conn. (1994);Mishell and Shiigi (eds), “Selected Methods in Cellular Immunology”, W.H. Freeman and Co., New York (1980); available immunoassays areextensively described in the patent and scientific literature, see, forexample, U.S. Pat. Nos. 3,791,932; 3,839,153; 3,850,752; 3,850,578;3,853,987; 3,867,517; 3,879,262; 3,901,654; 3,935,074; 3,984,533;3,996,345; 4,034,074; 4,098,876; 4,879,219; 5,011,771 and 5,281,521;“Oligonucleotide Synthesis” Gait, M. J., ed. (1984); “Nucleic AcidHybridization” Hames, B. D., and Higgins S. J., eds. (1985);“Transcription and Translation” Hames, B. D., and Higgins S. J., Eds.(1984); “Animal Cell Culture” Freshney, R. I., ed. (1986); “ImmobilizedCells and Enzymes” IRL Press, (1986); “A Practical Guide to MolecularCloning” Perbal, B., (1984) and “Methods in Enzymology” Vol. 1-317,Academic Press; “PCR Protocols: A Guide To Methods And Applications”,Academic Press, San Diego, Calif. (1990); Marshak et al., “Strategiesfor Protein Purification and Characterization—A Laboratory CourseManual” CSHL Press (1996); all of which are incorporated by reference asif fully set forth herein. Other general references are providedthroughout this document. The procedures therein are believed to be wellknown in the art and are provided for the convenience of the reader. Allthe information contained therein is incorporated herein by reference.

Example 1 Differential Expression of miRNAs in Soybean Plant UnderAbiotic Stress Versus Optimal Conditions

Plant Material

Glycine max seeds (soy) were obtained from Taam-Teva shop (Israel).Plants were grown at 28° C. under a 16 hours light:8 hours dark regime.

Drought Induction

Plants were grown under standard conditions as described above untilseedlings were four weeks old. Next, plants were divided into twogroups: control plants were irrigated with tap water twice a week anddrought-treated plants received no irrigation. The experiment continuedfor five days, after which plants were harvested for RNA extraction.

Salt Induction

For salinity induction, irrigation with regular water was substituted byirrigation with 300 mM NaCl solution in the stress group, for an overallof 3 irrigations for a ten-day period.

Heat Shock Induction

For induction of heat shock, the stress group plants were exposed to ahigh temperature (37° C.) for one hour.

Total RNA Extraction

Total RNA of leaf samples from eight biological repeats were extractedusing the mirVana™ kit (Ambion, Austin, Tex.) by pooling tissues from2-4 plants to one biological repeat. RNA analysis was performed on planttissue samples from both experimental and control groups.

Microarray Design

Custom microarrays were manufactured by Agilent Technologies by in situsynthesis. A microarray based on Sanger version 16 was designed andconsisted of a total 4602 non-redundant DNA 45-nucleotide long probesfor all known plant small RNAs, with 1875 sequences (40.7%) from miRBase(http://wwwDOTmirbaseDOTorg/indexDOTshtml) and 2678 sequences (58DOT2%)from PMRD (http://bioinformaticsDOTcauDOTeduDOTcn/PMRD/), with eachprobe being printed in triplicate. Control and spike probes account forthe remaining sequences on the microarray.

Results

Wild type soybean plants were allowed to grow at standard, optimalconditions or stress conditions for a period of time as specified above,at the end of which they were evaluated for stress tolerance. Three tofour plants from each group were grouped as a biological repeat. Four toeight biological repeats were obtained for each group, and RNA wasextracted from leaf tissue. The expression level of the soybean smallRNAs was analyzed by high throughput microarray to identify small RNAsthat were differentially expressed between the experimental groups.

Tables 1-6 below present sequences that were found to be differentiallyexpressed in soybean grown under drought conditions (lasting five days),high salt conditions (lasting ten days) or heat shock conditions(lasting one hour), compared to optimal growth conditions. To clarify,the sequence of an up-regulated miRNA is induced under stress conditionsand the sequence of a down-regulated miRNA is repressed under stressconditions.

TABLE 1Differentially Expressed (Up-regulated) Small RNAs in Soybean PlantsGrowing under Drought (5 days) versus Optimal Conditions. Fold- miR NameMature Sequence Stem Loop Sequence p-value Change ahy-miR3514-5pAGGATTCTGTAT ACAATAGAAGGATTCTGTATTAAC 5.90E−06 1.97 (+) TAACGGTGGA/1GGTGGACATGATTTATCTCGTTTTT AAAGATATCTTTGCATTTCATATGAGATTTAAAGTTTTTATTGGTAAT ATAAATCTCACATGAAATTTAAATTTATATTTTAAAGTTAAGATAAAG TCATGTCACCGTTAATACAGAATCCTTCAATTATATTTAGTCAGGGG/ 174 aly-miR831-5p AGAAGAGGTACAAGTGCTACAAGAATGTATAGTCT 1.10E−05 1.88 (+) AAGGAGATGAGTAGAGTCTCAAGAAGAGGTACAA A/2 GGAGATGAGAAGTGAATCACTGAAACAAGTGGTTCTGGTTTGTGGAT CAGTATGGTTTACCCAAAACACGTGTTTGGTGCTTCACTTCTAAACTCC TCGTACTCTTCTTGGGATTCTATGACTTACACTTGTTGATTT/175 aqc-miR159 TTTGGACTGAA GGAGTCTTTCCAGCCCAAAACAGC3.00E−03 1.51 (+) GGGAGCTCTA/3 TTCTTGATCTTCTTGAAAACTTCTGTTTGGACTGAAGGGAGCTCTAA/ 176 ath-miR157a TTGACAGAAGAGTGTTGACAGAAGATAGAGAGCA 1.00E−03 1.70 (+) TAGAGAGCAC/4CAGATGATGAGATACAATTCGGAG CATGTTCTTTGCATCTTACTCCTTTGTGCTCTCTAGCCTTCTGTCATCAC C/177 ath-miR159b TTTGGATTGAAGGGAAGAGCTCCTTGAAGTTCAATG 6.80E−03 1.63 (+) GGAGCTCTT/5GAGGGTTTAGCAGGGTGAAGTAA AGCTGCTAAGCTATGGATCCCATAAGCCTTATCAAATTCAATATAATT GATGATAAGGTTTTTTTTATGGATGCCATATCTCAGGAGCTTTCACTT ACCCCTTTAATGGCTTCACTCTTCTTTGGATTGAAGGGAGCTCTTCATC TCTC/178 ath-miR159c TTTGGATTGAAGGTGTAACAGAAGGAGCTCCCTTCC 1.20E−03 1.65 (+) GGAGCTCCT/6TCCAAAACGAAGAGGACAAGATT TGAGGAACTAAAATGCAGAATCTAAGAGTTCATGTCTTCCTCATAGAG AGTGCGCGGTGTTAAAAGCTTGAAGAAAGCACACTTTAAGGGGATTGC ACGACCTCTTAGATTCTCCCTCTTTCTCTACATATCATTCTCTTCTCTTC GTTTGGATTGAAGGGAGCTCCTTT TCTTCTTC/179ath-miRf10068- CACCGGTGGAG GGACTTCTCATCTTCTTTCTTAGCC 2.00E−08 2.09 (+)akr GAGTGAGAG/7 GCCGGTGCTCCAGCTCCACCACCG TGTCCTCCAACATTACCGTGGCTTCCAGTTCCACCGGTGGAGGAGTGA GAGTGGGAAGTTT/11875 ath-miRf10240- ATCGAAGGAGAGATTTCTCGTCCTCCGGCAATCCTT 1.90E−05 1.90 (+) akr TGGAGGACG/8CGAACTCATCTTCATCCCAGTAAT CGAAGGAGATGGAGGACGAAGGC TTC/11876ath-miRf10451- AAGAAGGAGGA CTCTAGATCTCAACAGGTTTCCTC 2.30E−07 2.19 (+)akr ACAACCTGTTG/ CTCCTTCTTTCTATTTAGCTACTTG 9 GTTTCAATTGTTTCAAGCCTAGGTAAGCATATGTAAAAAAGAGACAA TTGAAACCAAGTAACTAAATAGAA AGAAGGAGGAACAACCTGTTGAGATCTAGAG/11877 ath-miRf10687- TTAGCTGAAGA TTTGTTTGTTTAGCTGAAGAAGCA3.70E−06 1.84 (+) akr AGCAGAGGAG/10 GAGGAGTCGGCATTGGGGCACAGTCACTCATCGATGCTGCAATGGGT AAGTCCTCTGCATACTTTTGCTGA GATAGGAATAGA/11878ath-miRf10701- TGCAGTTCCTGG GGTGCCGCTGCAGTTCCTGGAGGT 1.30E−08 2.49 (+)akr AGGTGGAGGA/11 GGAGGAGGTGGTGGTGGGGCCAC TGCAGCTCTTGGAGGTGGAGGCGGTGGAGGTGGAGCCGCTATAGTTGT TGGAAGTGGAGGAGGTGGCGGTG GTGGT/11879ath-miRf10751- CTTGTGGAGAG TTGTAATTTCTTGTGGAGAGGAAG 7.80E−08 2.10 (+)akr GAAGCAAGA/12 CAAGAGGATGTGCTTGGTTGTGGA AATATAGGGCCCTTAAAATATATTCATCGTATTCACTCACATAACAAA AATTCCACAAGTAAGCACATCATCTTGCTTCCTCCACAAGAAATTACA A/11880 ath-miRf10924- TGAGGCGTATCTGAGGCGTATCAGGAGGTAGTGTT 5.70E−04 1.73 (+) akr AGGAGGTAGT/13CTTGGTGGGACAATTTGTGTTGTA TGTTTCA/11881 ath-miRf11021- GAGGTTTGCGAGATGTTGGAGGTTTGCGATGAGAA 1.80E−04 1.60 (+) akr TGAGAAAGAG/14AGAGATTGGCCGGAAGAATTATCA GCCATCAACATCGAGATTGTGAGATAATCGGAAGACCTGTAATTGTGA AGGTAACTCTTTCTCATCTGCAAA TCTCAACTGTC/11882ath-miRf11037- TCATCGGAGAA TTGTCTCTGTTCATCGGAGAAACA 1.30E−07 2.78 (+)akr ACAGAGGAGC/15 GAGGAGCAAGACGTTTCAAACGG TTCTTGGCTCATAATTTGCTTCTCTGTTACCTTGGATGACAAGAAAGAC AA/11883 ath-miRf11042- GGAAGAGGCAGAGGGAGCCAGGGAAGAGGCAGTG 2.20E−03 1.56 (+) akr TGCATGGGTA/16CATGGGTAGAGACAAAACAGAGT CGTTTAATGTTTTAGTAAACTCAATCCATGCTCTGCTTGTTCCCTGTCT CTCT/11884 ath-miRf11045- TTTCTTGTGGAGTTGTAATTTCTTGTGGAGGAAGCA 8.60E−11 3.85 (+) akr GAAGCAAGAT/17AGATGATGTGCTTACTTGTGGAAT TTTTGTTATGTGAGTGAATACGATGAATATATTTTAAGGGCCCTATAT TTCCACAACCAAGCACATCCTCTTGCTTCCTCTCCACAAGAAATTACA A/11885 csi-miR3946 TTGTAGAGAAAATAAAGATGATGATGACAATGAAT 1.80E−04 1.68 (+) GAGAAGAGAGCTTTGTAGAGAAAGAGAAGAGAGC AC/18 ACAAACTTTTTGCTGAAAGTAGCTTTGATTCGATGTGTATCGGTTCAT AGATAATGAGTTTTCAAGTCTATTTTAATAGAATACTAAAAGTTAGCT CTAAAAATC/180 gma-miR156g ACAGAAGATAGTGAACAATATCTTGAACAGTTTGT 2.00E−04 1.76 (+) AGAGCACAG/19TGACAGAAGATAGAGAGCACAGG TGATCATACCCAAAAAAGCTTTTGTGTGTGAGCAGTTTTGTGCTCTCTA TCTTCTGTCAATGTACTTCTCA/181 gma-miR157cTGACAGAAGAC TGACAGAAGACTAGAGAGCACAA 3.90E−04 1.58 (+) TAGAGAGCAC/20AGGAGTGAGATGCCATTCCCTTTC ATGCATTTCATCATCAGTGCTCTCT ATCTTCTGTCAA/182gma-miR159a-3p TTTGGATTGAAG AATTAAAGGGGATTATGAAGTGG 8.40E−03 1.59 (+)GGAGCTCTA/21 AGCTCCTTGAAGTCCAATTGAGGA TCTTACTGGGTGAATTGAGCTGCTTAGCTATGGATCCCACAGTTCTAC CCATCAATAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATTTGGGG AGCTTCATTTGCCTTTATAGTATTAACCTTCTTTGGATTGAAGGGAGCT CTACACCCTTCTCTTCTTTTCT/183 iba-miR157TTGACAGAAGA TTGACAGAAGATAGAGAGCATGCT 6.40E−04 1.60 (+) TAGAGAGCAT/22AGAAATTACATTGATAAGCTATGT GGTTCAGAGACCAATCTTCTTATGAGTTCCAATAAGGAGTTGGTTTGT CCCCCCACTGGTATTATGTCTTCAGGTTGACCCTTCACCATGAGAATC ATATGTAATTCTCCGGCGGCGCTCATTGTGACCTGCCAATCGCCTCCG GCAACTCCTCTTAGCTTCATCAAACTGGGCTAATTCATGAAACCTGCT GCATTGCTGACAGAAGCGCTGTTGAACTCCATTTATAAGTACT/184 mdm-miR482a-5p GGAATGGGCTGGAGAAGAGGGAAAGGGAGATTGG 1.50E−04 1.62 (+) TTTGGGAACA/23AGCTGCTGGAAGTTTTAGGAATGG GCTGTTTGGGAACAAGGAAATTACCACAATAATTGTCTTGTGGGGTTT CTTCCCAAGCCCGCCCATTCCTATGATTTCCAGCTGTTCCTCCCTTTCC CTTGTCTC/185 mtr-miR2119 TCAAAGGGAGGTTTATTTTTTTTACACTAAGATACT 2.20E−07 2.64 (+) TGTGGAGTAG/24CCCTACTTTCCTTTGATTGGAAATA AAGAGAGACAAAAAGGTAAATTTAATTTCTCTTCTTATGTCAATCAAA GGGAGGTGTGGAGTAGGGTGTAA AAAGTAAA/186osa-miR159e ATTGGATTGAA GATGAAGAAGAAGAGCTCCCTTTC 1.40E−03 1.67 (+)GGGAGCTCCT/25 GATCCAATTCAGGAGAGGAAGTG GTAGGATGCAGCTGCCGGTTCATGGATACCTCTGGAGTGCAGGGCAAA TAGTCCTACCCTTTCATGGGTTTGCATGACTCGGGAGATGAACCCGCCA TTGTCTTCCTCTATTGATTGGATTGAAGGGAGCTCCTCTAGCTACAT/ 187 osa-miR159f CTTGGATTGAAGAAGAAGAAGACGAGCTCCCTTC 5.10E−03 1.75 (+) GGGAGCTCTA/26GATCCAATCCAGGAGAGGAAGTG GTAGGATGCAGCTGCCGGTTCATGGATACCTCTGCAGTGCATGTCGTA GGCTTGCACTTGCATGGGTTTGCATGACCCGGGAGATGAACCCACCAT TGTCTTCCTCTTATGCTTGGATTGAAGGGAGCTCTACACCTCTCTC/188 osa-miR1858a GAGAGGAGGACTCCCGTCATCGCTGCCGGCAAAGG 3.90E−04 1.63 (+) GGAGTGGGGC/27GAGGGGGGGTGCCGCAACAAGGA GAGGAGGACGGAGTGGGGCGAGT GGAGCGTCAAAGGGGATGTCATCGCCGCCGAATCTGCTCGTGGGACA TCCCCTTCGATGCTCCACTCGCCCCAATCCGTCCTCCTCTCCTTGTTGCG GCACCCCCCTTCGCTGGCAGCGAC GACGGCCTC/189osa-miR1874-3p TATGGATGGAG CCATAATCATCTATTAGTACAGTG 7.80E−10 4.36 (+)GTGTAACCCGA GTGAAGACATAGGGCTACTACACC TG/28 ATCCATAAGGGTTCGAATCTTCGATGTGCCTAGATAGGGTACAGTTGG ATCCCATATGGATGGAGGTGTAACCCGATGCCTTTTACAAATAGATGG TTATTTT/190 osa-miR1879 GTGTTTGGTTTATCCAACCCATCCCACCTCGTCCCC 5.50E−06 1.91 (+) GGGATGAGGTGAAACCAAACACATGCACGCAAAT G/29 GGCTTGTTGAGGAATAAACATCTTGCTCCCTTGCATTCTAAACTATGA TATTCTTCAAGCATATGTGTTTGGTTTAGGGATGAGGTGGGATGGGTTA GGTCCA/191/ATCCAACCCATCCCACCTCGTCCCCAAACCAAACACATG CACGCAAATGGCTTGTTGAGGAATAAACATCTTGCTCCCTTGCATTCTA AACTATGATATTCTTCAAGCATATGTGTTTGGTTTAGGGATGAGGTGG GATGGGTTAGGTCCA/201 osa-miRf10839- CCTGTGACGTTGCTGCGAGCCTCCAGCAGCGGCACA 1.90E−11 7.36 (+) akr GTGAAGGTG/30GGAGGAGGCCATTGCAGCTGTCAA GGACGTTGAGAAACTCGCACTTGGGCAGGAAGGGGAGCGAGGGGTCA ACAAACGGGCGGCCTTCCCCTGTG ACGTTGGTGAAGGTGTCGGAG/11886 osa-miRf11013- GGTTTGCCGGA CCAGCCATCCCTCTAGAGCCGGCG 7.70E−072.11 (+) akr GTTGGAGGAGA/ AACTCCTCCCCTCCCCCCTCCCCCT 31TCCACTCCCACCCCACCCCACCCC GGGACCCTAACCCGTAGGGTCCTCGCCGGCGCCAGAGAAGAAGAGGT TTGCCGGAGTTGGAGGAGATGACA TGG/11887osa-miRf11352- AGGGATTTTGG TATAATATAAGGGATTTTGGAAGG 1.20E−06 1.64 (+)akr AAGGAGGTGAC AGGTGACATATTCTAGGACTATGT A/32 ATCTGGATCCAGAGATACTAGGATGTGTTACCTCCCTCTAAAATCCCTT ATATTATG/11888 osa-miRf11355- GGTGGAGGTGGGGTGGAGGTGGAGGTGGAGCTGT 7.60E−09 2.57 (+) akr AGCTGTGCCAAGCCAAATAGGCCCTGAGTTGTATG A/33 CACCACCAGTTCAACCCAATAGCTTAAGGGTCTGCTTGGCACAGCTCC AGCTCCACGCAGCC/11889 osa-miRf11595-CATCGGTGTTGG CATCGGTGTTGGAGGTGGCGGGGA 2.70E−06 2.10 (+) akr AGGTGGC/34CGAGGTGCTTCTCTAGAGCGGTGC CACTACTGCCACCACCGTGGAATTGACGAGGCACAATGCCCACCTCAC CCTCCGCTGCCACTCTGCTGCCAC CGATG/11890osa-miRf11649- AAACCGTGCAA TTACTTAAACCGTGCAAAGGAGGT 1.50E−09 4.07 (+)akr AGGAGGTCCC/35 CCCATGGCAGTATTTGCACCCGTT TTTACTAACGTGGCATCCTGTTGTACGGTTTTTTTTGACGCAAATACT GCCATGGGACCTCTTTTGCATGGT TTGAGTAA/11891osa-miRf11829- ACGCGGAGGAG GCACGCGGAGGAGGTGGTGTTCTC 2.80E−04 1.51 (+)akr GTGGTGTTCT/36 GCCGGAGTACGAGGAGTTCGCCGT CAGGAACGCCGCCCTCTGCGTCC/11892 ppt-miR895 GTAGCTTAGCG GATTCATGTAATTATTGTTAACCTC 6.90E−1312.97 (+) AGGTGTTGGTA/ TTTGTGTTCCGAGCTTTTATGATTG 37GTAGCTTAGCGAGGTGTTGGTATG ATACCAATCCCTGGTTTGCTTGTTCCTAATTGAGTTATGCTTGCACTCA AATCTAGGGGAGCGGTATTTTGGCTCACTCGCAATGCTTTCATGTACC CTTCCCGCATTATGAGTGCCACTTGGCTCCATGGTGTGATATATAAGT TTC/192 psi-miR159 CTTGGATTGAATGGAGCTCCCTTCAGTCCAACCAA 9.90E−04 1.60 (+) GGGAGCTCCA/38AGCTTGTGCGGCGGTGGTTCAGCT GCTGATTCATGCATTCGACTGCCCTGTCCGTGACTTTCCAGCAGCCTG AATCAATCAATCTATCTCCATGACAGGATAGTGGTGTGCATGACGCAG GAGATGTATTGTCACTGGACACGCATTCCTTGGATTGAAGGGAGCTCC A/193 pta-miR156a CAGAAGATAGAGATGACAGAAGATAGAGAGCACA 3.50E−04 1.58 (+) GAGCACATC/39TCCGCTCACATGCCGGGACTCTGC GTTTGAGGTGTATGTGGTCTCCAT GATTCTGTCATC/194pta-miR156b CAGAAGATAGA GATGACAGAAGATAGAGAGCACA 1.80E−04 1.65 (+)GAGCACAAC/40 ACCGCTCAGATGCCGGCACTCTGC GTTTGAGGTGTATGTGCTCTCGTTGATTTTGTCATC/195 ptc-miRf10148- TGGTGCACCTG CTAGTTCCGGAGCCCGGTGAACTT7.40E−06 2.02 (+) akr GTGGTGGAG/41 TATCACCACTTCCTGCTCCTCTTGGCAAGCTTCCAGGTGGAGGAGGTG GACGAGGTGGTCCACCAGGTGGA GGAGGTGGTGGTGGTGGTGCACCTGGTGGTGGAGGTGG/11893 ptc-miRf10226- TCCTTTGGGGAGATGGTTGGAGAAGCTTCCGATCTC 1.70E−06 1.88 (+) akr ATGGAGAGCTT/CCTCAAAGGCTTCCTCTATAATTG 42 CCTTACATGATGGCATTAGTGGACTCCTTTGGGGAGATGGAGAGCTTA CTCCCCAT/11894 ptc-miRf10271- TTGGATTGAAGGGGAGTGGAGCTCCTTGAAGTCCA 6.60E−03 1.65 (+) akr GGAGCTCTAA/43ATAGAGGTTCTTGCTGGGTAGATT AAGCTGCTAAGCTATGGATCCACAGTCCTATCTATCAACCGAAGGATA GGTTTGCGGCTTGCATATCTCAGGAGCTTTATTGCCTAATGTTAGATC CCTTTTTGGATTGAAGGGAGCTCT AAACCC/11895ptc-miRf10300- TTTGGAAAGCA TATACATATATCTCACTTGCTTTCT 2.70E−06 2.38 (+)akr AGTGAGGTG/44 CAACTATCTCACTTTTCTTTTCAGA TTTCAAAAAAACGACATCATGAGACAGTTTGGAAAGCAAGTGAGGTGT GTGTATA/11896 ptc-miRf10522- TTGGGGAGCTGTGACGGATTCGGAGAACAGCTGTC 1.20E−04 3.58 (+) akr GACTCTGGA/45GGTGTTGATGGTGGCTGTGGGCAG AGGACATTTCAGAATTTGGGGAGCTGGACTCTGGAGCAGTGG/11897 ptc-miRf10619- GTTGGGCTTGCTTCTGCTTCGGGTGGCAGGTCTGGC 8.80E−07 2.47 (+) akr GCTGGAGGA/46GGTTGTAGAGGGGGCAGCGACGTT GATGATCTTCGCTCCTGTTGGTTGCCGTGGCGGTTGGGCTTGCTGCTGG AGGAAGA/11898 ptc-miRf10985- CAGAAGATAGAGTTGACAGAAGATAGAGAGCACT 3.20E−04 1.70 (+) akr GAGCACTGA/47GACGATGAAATGCATGGAGCTTAA TTGCATCTCACTCCTTTGTGCTCTC TAGTCTTCTGTCATC/11899ptc-miRf11757- CTTGGTGAATG TGGGACAGCTTGGTGAATGGTTGG 3.70E−07 1.84 (+)akr GTTGGGAGGAA GAGGAATGTCTTTAATGTGGTTAT T/48 GCATCAGTGAAACTCTAGTAAGATTCTCTGTCCACTCCTCTGCATCCGG CACTTCTCTTAACCGTGCACCTGCT TTAACCA/11900ptc-miRf11844- CCCAACTTGGA GCGTCCAGACCCAACTTGGAGGTG 8.30E−04 1.73 (+)akr GGTGGGTGTGG/ GGTGTGGACGCGTCCAACCCCAAG 49 TTGGGCGTGGATGCGTCCAGGCCTAATTTCGAGTTGGGCGTAGACGC/ 11901 ptc-miRf11847- GAAAGTGTGGAACTTTTCTACGAAAGTGTGGAGAA 4.30E−07 2.28 (+) akr GAAGGTTGCC/50GGTTGCCCCTAAAAAATCTTTTAT GGCGACTTTCTCGACATTTTGGTA GAAAAGT/11902ptc-miRf11855- GGCAGAGCATG CGGGGAACAGGCAGAGCATGGAT 5.90E−05 3.96 (+) akrGATGGAGCTA/51 GGAGCTACTAACAGAAGTACTTGT TTTGGCTCTACCCATGCACTGCCTCTTCCCTG/11903 sbi-miR159a TTTGGATTGAAG AGCGAAGCTCCTATCATTCCAATG 1.20E−021.59 (+) GGAGCTCTG/52 AAGGGCCCTTTTCATGGGTGGTTC CGCTGCTCGTTCATGGTTCCCACTATCCTATCTCATCATGTATGTGTGT ATGTACTCTAGAGGGCCCGAGAAGAGATTCATGTGGTCGTCAGTCTTT GAGATAGGCTTGTGGTTTGCATGACCGAGGAGCTGCACCGTCCCCTTG CTGGCCGCTCTTTGGATTGAAGGG AGCTCTGCA/196smo-miR1103-3p TGGAAAAAGGA GCCCATGAACAAGAGTGCACCCCC 7.50E−10 3.98 (+)GGTGCATTCTTG TTTCCAATCGGTTAAAGGTCTTAG T/53 GATAGTTGGAGTTTAAGCGTCCTTGGGTTTGAATAGTACTGGGCTGGG TGACCTCCCGGGAAGTCCAAATTCAGGAGCTTACATTAACCCCAAGTA TTCCAAAACGCTTAATCGATTGGAAAAAGGAGGTGCATTCTTGTTCAT AGGCCC/197 smo-miR156b CTGACAGAAGATGGACTGCTGCTGACAGAAGATAG 2.50E−04 1.62 (+) TAGAGAGCAC/54AGAGCACAGACGTTTGGCTGCAAG AGCGGAATCCATATCCAGCAGCTCTGCGTTCGTGCTCTCTATTCTTCTG TCATCAATCTTTCGA/198 tae-miR2003 CGGTTGGGCTGTCATTCGGATTCGCCATCATACGTC 7.90E−05 2.99 (+) ATGATGGCGA/55CAACCGTGCATTTGATATGCATAT ATATGCATCACGAGCAACGGTTGGGCTGTATGATGGCGATACCGATTG/ 199 AGTGGGAGATGAAGGAGCCTTGC 7.80E−06 2.19 (+)zma-miR482-5p TGGGAGATGAA ATCGATGTCACCGCCGGAGGAGCG GGAGCCTT/11874CTCGCCTTCTTCGCGCACCGCCGC AATAGCCGCCCTCGGACCCCTCGCCTCGCTCTTCCTTGTTCCTCCCATT TT/11904 * NA = not available

TABLE 2Differentially Expressed (Down-regulated) Small RNAs in Soybean PlantsGrowing under Drought (5 days) versus Optimal Conditions. MatureSequence/SEQ ID Fold- miR Name NO: Stem Loop Sequence/SEQ ID NO: p-ValueChange aly-miR396a- GTTCAATAAAGCT TCTACGTGACCCTCTCTGTATTCTTCCACA7.20E−08 2.93 (−) 3p GTGGGAAG/57 GCTTTCTTGAACTGCAAAACTTCTTCAGATTTGTTTTTTTTATATATATGTCTTACGCAT AAAATAGTGTTTTTGTTCACATCTCTGCTCGATTGATTTGCGGTTCAATAAAGCTGTGG GAAGATACGGACAGAGTCAAAGA/202 aly-miR396b-GCTCAAGAAAGCT GAAGAAGAAGAAGAAGATCCTGGTCATA 2.10E−08 4.25 (−) 3pGTGGGAAA/58 TTTTTCCACAGCTTTCTTGAACTTTCTTTTTCATTTCCATTGTTTTTTTTTTTCTAAACCAA AAAAAAAGATCTCTAAAATTTAGCATTTTGGAAACAAAGAAGAAGCTCAAGAAAGCT GTGGGAAAACATGACAATTCAGGGTTTTACTCCATTGATTC/203 bdi-miR2508 ATTGAGTGCAGCG GCAAAGGCATCATTGAGTGCAGCGTTGAT1.60E−02 1.73 (−) TTGATGAAC/59 GAACAGGGGCCAGGCGACCGGCGGCCGGTCCGGTTCGGTTCACCGGCGCTGCACACA GTGACGCCCTTGC/204 ctr-miR171 TTGAGCCGCGTCAATCGACGGTTGAAGGGGAGAGTTGTAAAA 7.00E−04 1.90 (−) ATATCTCC/60TGAAATCATCAAGGTATTGGCGCGCCTCA ATTTAAAGACGTGGTTAAATGGGCATGATTAGCCATGTATTTTCATTGAGCCGCGTCAA TATCTCCTTAATTATTTTGTAACTCTCTCCTCTATATCCTCGCCTTCGGTATGCAGCTGCT CCTCGATACATATGAGGATTCAGAAACAGACAAAGGCGGTAGAAGTAATCTTCATCAA TATTATTGAAGCAGGAAACATAACGGCAAGTTTTAAGACCCGTTTGGGGCATGTGGGG TCTCATTTTGATGTTAATGAAGTGAAAACTTGTATTTTCCCTCAAACATTCACTCACTCC AGGCCGGCAGGAACAAC/205 gma- TCTCATTCCATACACAGTGTTTGGCAGAGGTGTATGGAGTGAG 3.20E−03 1.61 (−) miR1507a TCGTCTGA/61AGAAGGGAAAGGGTATTTTCCGATTCTGT CGTTACTCTCTTCCCTCTCTCATTCCATACATCGTCTGACGAACGTATC/206 gma-miR159d AGCTGCTTAGCTATGGGTGAATTGAGCTGCTTAGCTATGGATC 7.30E−07 2.63 (−) GGATCCC/62CCACAGTTCTACCCATCAATAAGTGCTTTT GTGGTAGTCTTGTGGCTTCCATATCTGGGGAGCTTCATTTGCCT/207 gma-miR396d AAGAAAGCTGTGGGGTCATGCTTTTCCACAGCTTTCTTGAACT 8.90E−06 2.12 (−) GAGAATATGGC/63TCTTATGCATCTTATATCTCTCCACTTCCA GCATTTTAAGCCCTAGAAGCTCAAGAAAGCTGTGGGAGAATATGGCAA/208 gma- AAGTGATGACGTGTTGTTAGTTGCCTTTCGTTAAGTGATGACG 2.10E−03 1.86 (−) miR4371b GTAGACGGAGT/64TGGTAGACGGAGTGCCGTGTCATTATGCC TTGTCACAGACACCTCATTGCTACATCATCACCGCTAATGATATGGCACTGACGTGTTA GTGATTGGTGTGATGACGTGACACTCTATCTGCCACATCATCACCTAACGGAAGACAA CTAACGA/209 gma- TACGCAGGAGAGAAAGGTTTGCTACGCAGGAGAGATGACGCT 6.10E−05 2.57 (−) miR4376-5p TGACGCTGT/65GTCCCTTGCACCCATCCTAGCTTCCCTTGA GTAGGTAAGAGCAAGGCCAGCCAGCATCATATCTCCTGCATAGTAAACCTT/210 gma- ACGGGTCGCTCTCACTTTGATCTGGGTGAGAGAAACGCGTATC 1.40E−03 3.07 (−) miR4416a CCTAGG/66GATGGATTGGGTTCAGTTCTGGTCTCACA CGGTTTGTTCTAACAATTTGTACTGACTGTGTTTTGATCGATACGGGTCGCTCTCACCTA GGCCAGAGTTGC/211 gma- TCTTCCCAATTCCGTCAGAATTTGTGGGAATGGGCTGATTGGG 1.30E−05 2.05 (−) miR482a-3p CCCATTCCTA/67AAGCAATGTGTGCTGGTGCAATGCATTTA ATTTCTTCCCAATTCCGCCCATTCCTATGA TTTCTGA/212gma- TATGGGGGGATTG GGTATGGGGGGATTGGGAAGGAATATCCA 3.20E−08 1.71 (−)miR482b-5p GGAAGGAAT/68 TAAGCAAAATATGCTATTTCTTCCCTACAC CTCCCATACC/213gso-miR169g* TCGGCAAGTTGGC AGCCAAGGAUGACUUGCCGGCAUUAGCC 1.20E−052.46 (−) CTTGGCT/69 AAGUGAAUGAGCAUCAUAUAUAUAUAUAUAUAUAUAUAUGACUCAUGUUCUUGUCG GCAAGUUGGCCUUGGCU/11905 gso-miR482aTCTTCCCTACACCT GGGGAAGGCATGGGTATGGGGGGATTGG 1.60E−02 1.74 (−) CCCATAC/70GAAGGAATATCCATAAGCAAAATATGCTA TTTCTTCCCTACACCTCCCATACCACTGTT TTTCCT/214osa- GTCTTATAACCTGA TACTACCTCCATTTCAGGTTATAAGACTTT 2.10E−02 1.84 (−)miRf11996- AACGGGGG/71 CTAGTGTTGCTCACATTCATATATATGTTA akrATAAATTCATTAACATATAGAAAGTCTTA TAACCTGAAACGGGGGAAGTA/11906 ppt-miR166mTCGGACCAGGCAT GCCGAGAACAGAGATTGTGTAGCTCAGCT 2.20E−05 1.77 (−)CATTCCTT/72 GTAAGGAATGTGGCATGGCTCGATGCTGT TTGAGCATGTCAAGTTCAGCCTCGGACCAGGCATCATTCCTTTCATCTCAGTTACACAT TTGACATCCAGGA/215 pta-miR166cCCGGACCAGGCTT ACCAATCGAATCCGGACCAGGCTTCATCC 8.30E−04 1.59 (−)CATCCCAG/73 CAGGCATCTGGACCCAATCGACAGCAGCT CCTTTAGCCTTTGAAAGGAACTCTGTCAAGGTCTCCTCTGCTATAGACAGGAGTCCAG CGGGGCTAGCATCTCTTGGGGGATGCTGAGGTGTTGGATTATGTTGGT/216 ptc-miR166p TCGGACCAGGCTCTAAGGTTGAGAGGAACGCTGTCTGGGTCG 4.70E−05 1.77 (−) ptc- CATTCCTT/74AGGTCATGGAGGCCATGATTATACATAAA TGGCATTATCTGATGACAGCCCAGATAATCGATGCACCTGTCTTGAACCTAAATGATT CTCGGACCAGGCTCCATTCCTTCCAACCAT/ 217AAGATGGAGAAGC GTGTGTGAGCAAGATGGAGAAGCAGGGC 6.10E−04 1.56 (−) miRf11079-AGGGCACGTGC/75 ACGTGCACTACTAACTCATGCACACAGAG akrAGGGAGACGCATTTCTTGCTGGAGTTACG AGTTACGACTCTTACCTACTATTGATTTTGTTAGCTCCAGTGAGTTAGTTATTCATGTGC CTGTCTTCCTCATCATGATCACTAC/11907 ptc-CAAGGCTCTGATA CTTGGTCATCAAGGCTCTGATACCATGTC 1.70E−05 1.81 (−) miRf11396-CCATGTCAA/76 AAAGAATCATATTTTGAGACCTTATCTAA akrCAGCTTAAGCTATTGGGTTGAGATGGTTC CTTGACATGATATCAGAGCCTTGATGACG AAG/11908ptc- CAAGGCTCTGATA GCTTGGTCATCAAGGCTCTGATACCATGTT 2.30E−04 1.63 (−)miRf11669- CCATGTT/77 AAAGAACCATCTCAACCTAATACCATGTT akrAGAGAATAATATAAATCATATCTAGAGAC TTTACCTAACAGCTTAAGCTATTGGCCTATTGGATTAGTATGGTTCTTTGACATGGTATC AGAGCCTTGATAACCAAGT/11909 vvi-miR394bTTGGCATTCTGTCC ACAGAGTTTATTGGCATTCTGTCCACCTCC 6.70E−03 1.55 (−)ACCTCC/78 CATCTCTTGAAAATCTCTCTTTTCTCTCTG TGGAGGTGGGCATACTGCCAACCAAGCTCTGTT/218 zma- GTTCAATAAAGCT AGATGGCCTTCTTTGTGATCTTCCACAGCT 2.10E−084.76 (−) miR396b-3p GTGGGAAA/79 TTCTTGAACTGCATCTCTCAGAGGAGCGGCAGCTTCAACTCCTCCACCCGCATCAGCA GGTGCATGCAGTTCAATAAAGCTGTGGGAAACTGCAGAGAGAGGCCAG/219

TABLE 3Differentially Expressed (Up-regulated) Small RNAs in Soybean PlantsGrowing under High Salt (10 days) versus Optimal Conditions. MatureSequence/SEQ Fold- miR Name ID NO: Stem Loop Sequence/ SEQ ID NO:p-Value Change ppt-miR895 GTAGCTTAGC GATTCATGTAATTATTGTTAACCTCTTTGTG7.20E−10 9.36 (+) GAGGTGTTGG TTCCGAGCTTTTATGATTGGTAGCTTAGCGA TA/80GGTGTTGGTATGATACCAATCCCTGGTTTGC TTGTTCCTAATTGAGTTATGCTTGCACTCAAATCTAGGGGAGCGGTATTTTGGCTCACTCG CAATGCTTTCATGTACCCTTCCCGCATTATGAGTGCCACTTGGCTCCATGGTGTGATATAT AAGTTTC/220 ptc- TTTGGAAAGCTATACATATATCTCACTTGCTTTCTCAACTA 1.40E−07 6.02 (+) miRf10300- AAGTGAGGTG/TCTCACTTTTCTTTTCAGATTTCAAAAAAAC akr 81 GACATCATGAGACAGTTTGGAAAGCAAGTGAGGTGTGTGTATA/11910 osa- CCTGTGACGTT CTGCGAGCCTCCAGCAGCGGCACAGGAGGA6.20E−09 5.21 (+) miRf10839- GGTGAAGGTG/ GGCCATTGCAGCTGTCAAGGACGTTGAGAAakr 82 ACTCGCACTTGGGCAGGAAGGGGAGCGAG GGGTCAACAAACGGGCGGCCTTCCCCTGTGACGTTGGTGAAGGTGTCGGAG/11911 smo- TGGAAAAAGGGCCCATGAACAAGAGTGCACCCCCTTTCCA 6.50E−08 5.20 (+) miR1103-3p AGGTGCATTCTATCGGTTAAAGGTCTTAGGATAGTTGGAGT TGT/83 TTAAGCGTCCTTGGGTTTGAATAGTACTGGGCTGGGTGACCTCCCGGGAAGTCCAAATTC AGGAGCTTACATTAACCCCAAGTATTCCAAAACGCTTAATCGATTGGAAAAAGGAGGTGC ATTCTTGTTCATAGGCCC/221 osa- AAACCGTGCATTACTTAAACCGTGCAAAGGAGGTCCCATG 9.70E−08 5.10 (+) miRf11649- AAGGAGGTCCGCAGTATTTGCACCCGTTTTTACTAACGTGG akr C/84 CATCCTGTTGTACGGTTTTTTTTGACGCAAATACTGCCATGGGACCTCTTTTGCATGGTTTG AGTAA/11912 osa-miR1874- TATGGATGGACCATAATCATCTATTAGTACAGTGGTGAAG 6.50E−09 4.75 (+) 3p GGTGTAACCCACATAGGGCTACTACACCATCCATAAGGGT GATG/85 TCGAATCTTCGATGTGCCTAGATAGGGTACAGTTGGATCCCATATGGATGGAGGTGTAAC CCGATGCCTTTTACAAATAGATGGTTATTTT/ 222 ptc-GTTGGGCTTGC TCTGCTTCGGGTGGCAGGTCTGGCGGTTGT 2.00E−08 3.70 (+) miRf10619-TGCTGGAGGA/ AGAGGGGGCAGCGACGTTGATGATCTTCGC akr 86TCCTGTTGGTTGCCGTGGCGGTTGGGCTTGC TGCTGGAGGAAGA/11913 osa- GCTGGAGGATGCCGGCTAGTACAATCGAATCCACTAGCAC 7.50E−08 3.48 (+) miRf10362- GCGACGGTGCCGAGGCTTGGGTCACTAGATCCCGTGGCCC akr T/87 TAGCCTAATTGCTGGAGGATGCGACGGTGCTTGTGAGC/11914 ahy-miR3514- AGGATTCTGT ACAATAGAAGGATTCTGTATTAACGGTGGA2.40E−08 3.43 (+) 5p ATTAACGGTG CATGATTTATCTCGTTTTTAAAGATATCTTT GA/88GCATTTCATATGAGATTTAAAGTTTTTATTG GTAATATAAATCTCACATGAAATTTAAATTTATATTTTAAAGTTAAGATAAAGTCATGTCA CCGTTAATACAGAATCCTTCAATTATATTTAGTCAGGGG/223 mtr-miR2119 TCAAAGGGAG TTTATTTTTTTTACACTAAGATACTCCCTAC2.00E−07 2.89 (+) GTGTGGAGTA TTTCCTTTGATTGGAAATAAAGAGAGACAA G/89AAAGGTAAATTTAATTTCTCTTCTTATGTCA ATCAAAGGGAGGTGTGGAGTAGGGTGTAAAAAGTAAA/224 osa- GGTGGAGGTG GGTGGAGGTGGAGGTGGAGCTGTGCCAAAT 2.40E−072.85 (+) miRf11355- GAGCTGTGCC AGGCCCTGAGTTGTATGCACCACCAGTTCA akr AAA/90ACCCAATAGCTTAAGGGTCTGCTTGGCACA GCTCCAGCTCCACGCAGCC/11915 osa-CATCGGTGTTG CATCGGTGTTGGAGGTGGCGGGGACGAGGT 8.90E−06 2.77 (+) miRf11595-GAGGTGGC/91 GCTTCTCTAGAGCGGTGCCACTACTGCCAC akrCACCGTGGAATTGACGAGGCACAATGCCCA CCTCACCCTCCGCTGCCACTCTGCTGCCACCGATG/11916 ptc- CCCAACTTGG GCGTCCAGACCCAACTTGGAGGTGGGTGTG 1.20E−052.75 (+) miRf11844- AGGTGGGTGT GACGCGTCCAACCCCAAGTTGGGCGTGGAT akr GG/92GCGTCCAGGCCTAATTTCGAGTTGGGCGTA GACGC/11916 ptc- GAAAGTGTGGACTTTTCTACGAAAGTGTGGAGAAGGTTGC 2.50E−06 2.70 (+) miRf11847- AGAAGGTTGCCCCTAAAAAATCTTTTATGGCGACTTTCTCG akr C/93 ACATTTTGGTAGAAAAGT/11917 ath-TTTCTTGTGGA TTGTAATTTCTTGTGGAGGAAGCAAGATGA 4.40E−07 2.59 (+) miRf11045-GGAAGCAAGA TGTGCTTACTTGTGGAATTTTTGTTATGTGA akr T/94GTGAATACGATGAATATATTTTAAGGGCCC TATATTTCCACAACCAAGCACATCCTCTTGCTTCCTCTCCACAAGAAATTACAA/11918 ath- GTGGGAGGACAAACATGTGGGAGGACTCCAAGTGTGGTTA 8.90E−07 2.51 (+) miRf10702- TCCAAGTGTG/TATCCTCGGTATTATCTCGATGTGAACCACA akr 95 CTTGGAGTCCTCCCACATGTTT/11919 ath-TGCAGTTCCTG GGTGCCGCTGCAGTTCCTGGAGGTGGAGGA 1.40E−06 2.40 (+) miRf10701-GAGGTGGAGG GGTGGTGGTGGGGCCACTGCAGCTCTTGGA akr A/96GGTGGAGGCGGTGGAGGTGGAGCCGCTATA GTTGTTGGAAGTGGAGGAGGTGGCGGTGGT GGT/11920osa-miR1869 TGAGAACAAT AAGGAACACCTGAGAACAATAGGCATGGG 2.20E−05 2.27 (+)AGGCATGGGA AGGTATTGGGAAAACACAGGAACATATTGT GGTA/97GACCCCTAATTTTAAAGGGAAATAATGGTT GAGGCTTTCCTCCATGTTCCCATGCCTAATGCTCTTAGGTGCTCTTTTT/225 ptc- TGGTGCACCT CTAGTTCCGGAGCCCGGTGAACTTTATCAC2.80E−05 2.22 (+) miRf10148- GGTGGTGGAG/ CACTTCCTGCTCCTCTTGGCAAGCTTCCAGGakr 98 TGGAGGAGGTGGACGAGGTGGTCCACCAG GTGGAGGAGGTGGTGGTGGTGGTGCACCTGGTGGTGGAGGTGG/11921 osa-miR1879 GTGTTTGGTTTTCCAACCCATCCCACCTCGTCCCCAAACCA 5.80E−05 2.21 (+) AGGGATGAGGAACACATGCACGCAAATGGCTTGTTGAGGA TGG/99 ATAAACATCTTGCTCCCTTGCATTCTAAACTATGATATTCTTCAAGCATATGTGTTTGGTTT AGGGATGAGGTGGGATGGGTTAGGTCCA/226/ATCCAACCCATCCCACCTCGTCCCCAAAC CAAACACATGCACGCAAATGGCTTGTTGAGGAATAAACATCTTGCTCCCTTGCATTCTAAA CTATGATATTCTTCAAGCATATGTGTTTGGTTTAGGGATGAGGTGGGATGGGTTAGGTCCA/ 235 ath- GGTGGTGGAATAGGGAATATCTTGATCTTTCCACCATCTAC 4.90E−06 2.21 (+) miRf10148- AGATCAAGAT/AAAGAATAAAAAAAAAGCTTCCAATATTAC akr 100 TAGGTATTTGGTGGTGGAAAGATCAAGATATTCCTTA/11922 osa- GGTTTGCCGG CCAGCCATCCCTCTAGAGCCGGCGAACTCC 4.70E−062.21 (+) miRf11013- AGTTGGAGGA TCCCCTCCCCCCTCCCCCTTCCACTCCCACC akrGA/101 CCACCCCACCCCGGGACCCTAACCCGTAGG GTCCTCGCCGGCGCCAGAGAAGAAGAGGTTTGCCGGAGTTGGAGGAGATGACATGG/11923 ath- ATGGTGGTACTCCTCGACTTCCTGGTAGAGTGGTGTGATCG 8.60E−05 2.18 (+) miRf10209- TCGGCCAGGTAGTGATGGTCAGGTGTGGAGGTGATGATAC akr GGT/102TCGACCAGGTGGTCAAGTGAAGTGATCAAG TGACTCTCATGGTGGTACTCGGCCAGGTGGTCGAGTGG/11924 ath- TGAGGCGTAT TGAGGCGTATCAGGAGGTAGTGTTCTTGGT 1.50E−042.18 (+) miRf10924- CAGGAGGTAG GGGACAATTTGTGTTGTATGTTTCA/11925 akr T/1031.90E−06 2.15 (+) ppt-miR1220a TTCCGGTGGTGACTTCTTGCACTCCTCTATCTCCCTCGGCAC AGGAAGATAG/CTGCACAGTGATTTTCTCAATATCTTCACGT 104 TGGTGGCCACGTTCGAACATATCCCATGCGGGCAACTCCGGCGTAGGTGTACACGGCCAG CGTTGCTTACCATCTGGAGGATACCCTTGCTCAAACCTACGACTCTGTTCCGGTGGTGAGG AAGATAGAGGAGTTCAAGAAGT/227 osa-CGCGCCGACG CGCCGTCTCCCTCGCCGTCGCCGGCGTCGCC 5.40E−06 2.12 (+) miRf11341-ATGACGGTGG GGAGATGACGAGAAGACGTGCCCCGGCGC akr AGT/105GCCGACGATGACGGTGGAGTCGGCG/11926 osa- AGGGATTTTGTATAATATAAGGGATTTTGGAAGGAGGTGA miRf11352- GAAGGAGGTGCATATTCTAGGACTATGTATCTGGATCCAG 2.30E−06 2.11 (+) akr ACA/106AGATACTAGGATGTGTTACCTCCCTCTAAA ATCCCTTATATTATG/11927 osa-miR2055TTTCCTTGGGA AGAAGATGGAGGCACCAGCCCAAGGAAAC 7.20E−04 2.09 (+) AGGTGGTTTC/ACAGACATTGACACGCAATTCAAGGAGAAG 107 ATTGCGTCCTACTTTTTCCTTGGGAAGGTGGTTTCTCTTCT/228 ath- ATCGAAGGAG GATTTCTCGTCCTCCGGCAATCCTTCGAACT 9.80E−072.03 (+) miRf10240- ATGGAGGACG/ CATCTTCATCCCAGTAATCGAAGGAGATGG akr 108AGGACGAAGGCTTC/11928 ath- CACCGGTGGA GGACTTCTCATCTTCTTTCTTAGCCGCCGGT6.30E−07 1.99 (+) miRf10068- GGAGTGAGAG/ GCTCCAGCTCCACCACCGTGTCCTCCAACATakr 109 TACCGTGGCTTCCAGTTCCACCGGTGGAGG AGTGAGAGTGGGAAGTTT/11929ghr-miR2950 TGGTGTGCAG CATGGGTTTATGTTATATTCCATCTCTTGCA 5.70E−06 1.98 (+)GGGGTGGAAT CACTGGACTAGCCAGCTTTTTGTTGGCTTCA A/110GCTTCAGGTTGGTGTGCAGGGGGTGGAATA CATCATTGATATCATG/229 ath- ACTTGGGTGGTGGTAAGTGATAATCATTACCACCCAAGCT 7.90E−04 1.98 (+) miRf10368- TGCTGATTAT/AACATTCAAACCAAAAACCAGTTTAAGTTA akr 111 ACTTGGGTGGTGCTGATTATCACTTGTCG/11930 ath- GGTGGTGAAG GGCGGTGGTGAAGAAGCATGGTTTGGAAAT 9.30E−05 1.93 (+)miRf10763- AAGCATGGTT/ CTCACAGCCTGGATTAGAGCCATATGAAGG akr 112GCTCACATGGGAGATGACCAAGAAAAGAG ACGACACTGAAGTCCACAAGTTAGAATTATATAGTGAAGTTTCTACATTATTTTCTCACCA CCGCT/11931 ptc- CATCTAGGTGTCTTACCATTGGACCACCTACTAGATGATTA 4.30E−04 1.92 (+) miRf10734- GTGGTCCAGTAAAACTACATCATCTAACCATCTAGGTGGT akr G/113 GGTCCAGTGGTAAGA/11932 osa-ACGCGGAGGA GCACGCGGAGGAGGTGGTGTTCTCGCCGGA 4.10E−05 1.90 (+) miRf11829-GGTGGTGTTCT/ GTACGAGGAGTTCGCCGTCAGGAACGCCGC akr 114 CCTCTGCGTCC/11933zma-miR482- TGGGAGATGA AGTGGGAGATGAAGGAGCCTTGCATCGATG 4.20E−05 1.88 (+)5p AGGAGCCTT/ TCACCGCCGGAGGAGCGCTCGCCTTCTTCG 115CGCACCGCCGCAATAGCCGCCCTCGGACCC CTCGCCTCGCTCTTCCTTGTTCCTCCCATTTT/ 230osa- TGGAAAGTTG ATGTGATGGAGATGCGATGGAAAGTTGGGA 1.30E−05 1.86 (+)miR1850.1 GGAGATTGGG GATTGGGGGAAGTTGTGTGTGAACTAAACG G/116TGGATTGGGGCCCTGTTTAGTTCACATCAAT CTTCCTCCAAATTCCCAACTTTTCATCACATCACAATCACAT/231 osa-miR1881 AATGTTATTGT AACCAAGTTAAAATGCTCATAGGTATGAAC2.00E−03 1.76 (+) AGCGTGGTGG AAGCATCAATGTTATTGTAGCGTGGTGGTG TGT/117TGACCTCTGTGCACGTAAGCTTGAGGCAGC AAGTTCGACTCCTTCAAAAGGAAGATTTGTACCGCTGGGGAAGTGCCAGAAGAAAAGAA CAAGGAAGACTTGCTAGCAGGACAAAAGGACGGTAAACTTGGAAAAAAAAAGGTCCAG AAGAAAAGAACAAAGAAGAACTGCTTGAAGGAGTCGAACTTGCTACCTCAAGCTTGCGT GCACATAGGTCACACCACTACGCTACAATAACGTTGATGCTTGTTCAGACCTGTGAGCATT TTAACTTGGTT/232 ptc- TCCTTTGGGGAATGGTTGGAGAAGCTTCCGATCTCCCTCAA 9.60E−05 1.74 (+) miRf10226- GATGGAGAGCAGGCTTCCTCTATAATTGCCTTACATGATGG akr TT/118CATTAGTGGACTCCTTTGGGGAGATGGAGA GCTTACTCCCCAT/11934 ptc- CTTGGTGAATTGGGACAGCTTGGTGAATGGTTGGGAGGAA 3.90E−05 1.73 (+) miRf11757- GGTTGGGAGGTGTCTTTAATGTGGTTATGCATCAGTGAAAC akr AAT/119TCTAGTAAGATTCTCTGTCCACTCCTCTGCA TCCGGCACTTCTCTTAACCGTGCACCTGCTTTAACCA/11935 ath- GAGGTTTGCG GATGTTGGAGGTTTGCGATGAGAAAGAGAT 1.50E−031.66 (+) miRf11021- ATGAGAAAGA TGGCCGGAAGAATTATCAGCCATCAACATC akr G/120GAGATTGTGAGATAATCGGAAGACCTGTAA TTGTGAAGGTAACTCTTTCTCATCTGCAAATCTCAACTGTC/11936 ath- TGGCGGTGGA GTGGATACTGTTCTGGTGGAGGATACTTCA 6.50E−041.65 (+) miRf10633- TACTTCTTGAT CCGGCGGATGAGGGTAAGTCTTGATCGGTG akrCGG/121 GTGGATACTTCACCGGTGGATGCTCGTATG GTGGCGGTGGATACTTCTTGATCGGTGGTGGATAC/11937 ptc- TTGGCGGTGA GAGAAACGCTCTAATTAATCATCGTTATGC 1.90E−041.63 (+) miRf10132- TTGAACGGAG CACGTGTCTATTTACGGATAACGCAACGCT akrGGT/122 ACTAAATCGCGAATTTTAGTTTGAGTGGAA GATCTTGGCCGTTGGATTGGCGGTGATTGAACGGAGGGTTGATC/11938 ptc- CAACTTAGAG GCCCTTAACCAACTTAGAGTTGGGGGTGGG5.20E−03 1.61 (+) miRf11315- TTGGGGGTGG/ CACGTCATGGGTCAACCTAGGGTTGGTCTCakr 123 GGACTCGCCCTTGCTCAACTTAGAGTTGGG TACGGGC/11939 aly-miR831-AGAAGAGGTA AAGTGCTACAAGAATGTATAGTCTTAGAGT 1.60E−03 1.61 (+) 5pCAAGGAGATG CTCAAGAAGAGGTACAAGGAGATGAGAAG AGA/124TGAATCACTGAAACAAGTGGTTCTGGTTTG TGGATCAGTATGGTTTACCCAAAACACGTGTTTGGTGCTTCACTTCTAAACTCCTCGTACT CTTCTTGGGATTCTATGACTTACACTTGTTG ATTT/233csi-miR3948 TGGAGTGGGA AGGAGTGTGGAGTGGGAGTGGGAGTAGGG 7.10E−05 1.55 (+)GTGGGAGTAG TGTTTACTTAGACTAAATGAAAGTATGGAT GGTG/125TATCAATCAGAATCCTAATTATTTGTTTACT TTGTCTTGGATTGGGAGTAAATTATTTTAAATTATAATTTTATCCTTATGTACAAAATTATA A/234

TABLE 4Differentially Expressed (Down-regulated) Small RNAs in Soybean PlantsGrowing under High Salt (10 days) versus Optimal Conditions.Mature Sequence/ Fold- miR Name SEQ ID NO:Stem Loop Sequence/ SEQ ID NO: p-Value Change aly-miR160c-3pGCGTACAAGGAG CATATAATAGTTTGTCGTCGTTATGCCTGGCT 7.60E−04 1.59 (−)CCAAGCATG/126 CCCTGTATGCCACGAGTGGATACCGATTTTGTTATAAAATCGGCTGCCGGTGGCGTACAAGGA GCCAAGCATGACCATAAGCATATG/236aly-miR396a-3p GTTCAATAAAGCT TCTACGTGACCCTCTCTGTATTCTTCCACAGC 1.20E−095.50 (−) GTGGGAAG/127 TTTCTTGAACTGCAAAACTTCTTCAGATTTGTTTTTTTTATATATATGTCTTACGCATAAAATA GTGTTTTTGTTCACATCTCTGCTCGATTGATTTGCGGTTCAATAAAGCTGTGGGAAGATACGG ACAGAGTCAAAGA/237 aly-miR396b-3pGCTCAAGAAAGC GAAGAAGAAGAAGAAGATCCTGGTCATATTT 9.00E−07 3.80 (−)TGTGGGAAA/128 TTCCACAGCTTTCTTGAACTTTCTTTTTCATTTCCATTGTTTTTTTTTTTCTAAACCAAAAAAAA AGATCTCTAAAATTTAGCATTTTGGAAACAAAGAAGAAGCTCAAGAAAGCTGTGGGAAAAC ATGACAATTCAGGGTTTTACTCCATTGATTC/ 238ath-miRf10197- CACTCGACCAAG GGTGAAGACACTCGACCTCGTGGTCGAGTGA 2.90E−073.71 (−) akr GGGGTCGAGTGA/ TGTGATCGAGTGGTGGTCAGAAGATGGAGAT 129GAAGTCACTCGACCAAGGGGGTCGAGTGATG TGATC/11940 ath-miRf10239- CGCCTTGCATCAATCGGGCTCGGATTCGCTTGGTGCAGGTCGGG 1.00E−03 2.17 (−) akr CTGAATC/130AACCAATTCGGCTGACACAGCCTCGTGACTT TTAAACCTTTATTGGTTTGTGAGCAGGGATTGGATCCCGCCTTGCATCAACTGAATCGGATCC TCGA/11941 ath-miRf10279- ACTCAGCCTGGGTGATGGTGATACTCGACATCCAGGTAGAGTG 7.80E−06 4.99 (−) akr GGTCGAGTGAT/131ATGAGGTCGAGTAGAGGTCTGGCAATGGGAT GAAGTCACTCAGCCTGGGGGTCGAGTGATGTGATCG/11942 bna-miR2111b- TAATCTGCATCCT GCACTTGATGAGGAACTGGTAATCTGCATCC4.40E−04 2.55 (−) 5p GAGGTTTA/132 TGAGGTTTAAAAATACATAGGCACATGCAAATGTGTGTATTATAGTTTTTAATCCTCGGGATA CAGATTACCTCTTCCTTTTACTGAA/239bra-miR160a-3p GCGTATGAGGAG TATGTGTAGTTGTATAAGATGTGTATGCCTGG 1.90E−041.94 (−) CCATGCATA/133 CTCCCTGTATGCCATCCTCTAAGCTCATCGACCATTGATGACCTCCGTGAATGGCGTATGAGG AGCCATGCATATTTTCATATACATTTACATAC/ 240csi-miR162-5p TGGAGGCAGCGG AAACTGTTTACACTGATCTGTGCTGCTGATAA 1.60E−031.95 (−) TTCATCGATC/134 ATCTTAATTTTTTTTTTTGAATTTTTATTTAACAGAAAATAGAGAGAGTGAAGTCACTGGAGG CAGCGGTTCATCGATCACTTTGTGCAAATTTTGTTGTGAAAAATAACACAAAATACATGAATC GATCGATAAACCTCTGCATCCAGCGCTCACTCCAACTCTATTC/241 gma-miR1524 CGAGTCCGAGGAGCGACTTATTGGAGTTCATTCTTCGCACTCTC 3.30E−03 1.73 (−) AGGAACTCC/135TCGGAAACCACTTGTTTCCAATCATCTAATCA GACGATAGCAGACTCAAGAAAGACGTTTCCTTCCCAGATCCTTCTAGACCATTTGCAAACCGT CTCCTTCCCCGAATCCATTCTCCAAACCCTCGATCCTTGAGGAGCTCCACCACCGTGACGGCG CTCCGGTCTCCGCCGTCAATTGTGCCGTCGCGGTGGAGCATGAGCGTCTTCATGAGTCTGAAA GGGAATTATAGGAACTACTTTCCTGATTAGGTTATTGGAAACAAGTGGTTTCCGAGTCCGAG GAAGGAACTCCAACGCCCAAC/242 gma-miR159dAGCTGCTTAGCTA GGGTGAATTGAGCTGCTTAGCTATGGATCCC 3.20E−06 3.24 (−)TGGATCCC/136 ACAGTTCTACCCATCAATAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATCTGGGGAGCTTC ATTTGCCT/243 gma-miR2119 TCAAAGGGAGTTATACTTCATTTTTTATACTTTAATTTCCTCTAT 2.70E−03 1.54 (−) GTAGGGGAA/137ACCTCACTTTTATTGGAGAAAAAAGAGAATA GAAAATAGTGGATTTCTCTTCTTTTTTTCAATCAAAGGGAGTTGTAGGGGAAAGTTTAGAAA ATGGCGTGT/244 gma-miR396d AAGAAAGCTGTGGGTCATGCTTTTCCACAGCTTTCTTGAACTTC 4.60E−08 2.76 (−) GGAGAATATGGC/TTATGCATCTTATATCTCTCCACTTCCAGCAT 138 TTTAAGCCCTAGAAGCTCAAGAAAGCTGTGGGAGAATATGGCAA/245 gma-miR4412- AGTGGCGTAGATAACTGTTGCGGGTATCTTTGCCTCTGAAGGA 9.80E−05 3.03 (−) 3p CCCCACAAC/139AAGTTGTGCCTATTATTATGGCTTATTGCTTT AGTGGCGTAGATCCCCACAACAGTT/246gma-miR4416a ACGGGTCGCTCTC CTTTGATCTGGGTGAGAGAAACGCGTATCGA 9.20E−064.30 (−) ACCTAGG/140 TGGATTGGGTTCAGTTCTGGTCTCACACGGTTTGTTCTAACAATTTGTACTGACTGTGTTTTGA TCGATACGGGTCGCTCTCACCTAGGCCAGAGTTGC/247 gma-miR482b- TATGGGGGGATT GGTATGGGGGGATTGGGAAGGAATATCCATA2.30E−10 2.74 (−) 5p GGGAAGGAAT/141 AGCAAAATATGCTATTTCTTCCCTACACCTCCCATACC/248 osa-miR162a TCGATAAACCTCT GGTGATGCCTGGGCGCAGTGGTTTATCGATC4.00E−04 1.52 (−) GCATCCAG/142 CCTTCCCTGCCTTGTGGCGCTGATCCAGGAGCGGCGAATTTCTTTGAGAGGGTGTTCTTTTTTT TTCTTCCTTTTGGTCCTTGTTGCAGCCAACGACAACGCGGGAATCGATCGATAAACCTCTGCA TCCAGTTCTCGCC/249 osa-miR1846eCAACGAGGAGGC CGCATCCGCCAACGAGGAGGCCGGGACCACC 4.30E−04 1.90 (−)CGGGACCA/143 GGATCCGGTGACTCCGGCCTCCTCGCCGGCA GATCCGG/250 osa-miR2104GCGGCGAGGGGA ACGGGCGCTCACGGTGGCTTCGACCCTCGTC 3.90E−02 1.51 (−)TGCGAGCGTG/144 TCGGCCGCGTGCGGTAGTGCGGGAGGCATGCCGTGTGTACCGGCGGCGAGGGGATGCGAGCG TGAGTGCCTCGG/251 osa-miRf10849-TGGACTGTTTGGG GCTGGACTGTTTGGGGGAGCTTCTGATTTTGG 1.80E−03 1.52 (−) akrGGAGCTTCT/145 GAGAAACGGCTATAGCTAGAAGCTCCCCGAA ACAGGCCCAAC/11943osa-miRf11415- GAGAGCAGGATG GAAGAGGCAGAGAGCAGGATGCAGCCAAGG 6.70E−031.55 (−) akr CAGCCAAGG/146 ATGACTTGCCGGCCGGCGATGGCCGACGGCGAGGTTAATTAATTGGCCGGAGACTGGCAGTC CTTCTCTGTTGATCCGGCAAGTTTGTCCTTGGCTACACCTTGCTCTCTTCTCGTC/11944 osa-miRf11996- GTCTTATAACCTGTACTACCTCCATTTCAGGTTATAAGACTTTCT 7.20E−03 2.01 (−) akr AAACGGGGG/147AGTGTTGCTCACATTCATATATATGTTAATAA ATTCATTAACATATAGAAAGTCTTATAACCTGAAACGGGGGAAGTA/11945 ppt-miR533b-5p GAGCTGTCCAGGGGAGGACCGATATGGAGAGCTGTCCAGGCTG 7.90E−04 3.23 (−) CTGTGAGGG/148TGAGGGGAGCACTCGTATTCTTTTGACCTTTG CTAGAAGAGGGAATACAGCGCTCTCCCTCACAGTCTGTACAGCTCTCTGTATCTCTTCCTCT/ 252 ptc-miRf10007- CATTGACAGGGATTGCTGTGGTGAGTTTCCCTGTCAGTGCTCAC 3.90E−02 1.77 (−) akr AACTCACCA/149TACGATATTTAATGAAGAAGAAAAATAAAGC AAGAGATAAAAAAGGCATTTCCTCGATTCAGATTTCAGGGTGCAGCATTGCATTGAGCATTG ACAGGGAAACTCACCACGGCAA/11946ptc-miRf10976- TGGGAACGTGGC GCCCTGTTTGGGAACGTGGCTGTGGCTACAC 2.30E−041.81 (−) akr TGTGGCTA/150 TGATGCTTCTGGTTTGGAAATGGAGGTGCAACTGAAGTTATGGGAACGTTCCCAAACAGGGC/ 11947 ptc-miRf11018- CTGCAAACCTAACTGCAAACCTAAGGGAGCGGTTTTGCAGACC 1.10E−02 1.79 (−) akr GGGAGCGG/151CCAAGCGCACAAGTCTGCAGACCCGCTCGCT TGGGTCTGCAG/11948 ptc-miRf11079-AAGATGGAGAAG GTGTGTGAGCAAGATGGAGAAGCAGGGCAC 2.30E−05 2.43 (−) akrCAGGGCACGTGC/ GTGCACTACTAACTCATGCACACAGAGAGGG 152AGACGCATTTCTTGCTGGAGTTACGAGTTAC GACTCTTACCTACTATTGATTTTGTTAGCTCCAGTGAGTTAGTTATTCATGTGCCTGTCTTCCT CATCATGATCACTAC/11949 ptc-miRf11324-CTTGTCGCAGGA TTGGGGGTTTCTTGTCGCAGGAGAGATGGCG 5.90E−05 1.73 (−) akrGAGATGGCGCT/ CTAGCTAACCATGGTCATATCATATATATCAT 153ATGGCAAGTATTACTTGCTCTTTGTATGTATC AGCTGTAAAGATAGCTCAGCTAAAGCCATCCTCCTGCGACTGGACACCCTGCAA/11950 ptc-miRf11396- CAAGGCTCTGATCTTGGTCATCAAGGCTCTGATACCATGTCAA 4.10E−04 1.51 (−) akr ACCATGTCAA/154AGAATCATATTTTGAGACCTTATCTAACAGCT TAAGCTATTGGGTTGAGATGGTTCCTTGACATGATATCAGAGCCTTGATGACGAAG/11951 ptc-miRf11953- GTAATCTGCATCCAGGATTGGGTAATCTGCATCCTGAGGTTTGG 1.90E−04 2.74 (−) akr TGAGGTT/155ATCACCACATGTTTTGATCTAGTCCTTGGGTT GCAGATTACCTCTTCCT/11952 ptc-miRf12069-GGAGGGGCTGCA CTTGGGCCAGGAGGGGCTGCAAGACCCAAGT 3.90E−07 3.81 (−) akrAGACCCAAG/156 GACTTGGGTCTGCGCTCTTGCCACACCCAAGCAACTTGGGTCAGACGCCCTTCCAAGCCCCA AG/11953 ptc-miRf12389- GTCGACCTGGCGTGAGTCGACCTGGCGAGTCAACCGGGTTTGA 1.00E−02 1.75 (−) akr AGTCAACCGGG/TTGTTTTTTTATCCTTGCTAGTCTTTCACCTTA 157 CTAGGACCGGTCCAGCCACCGGGTTAATCGAGTCCCGGGTTGACTTGCTGGGCCGTCTGG/ 11954 vvi-miR2111-5p TAATCTGCATCCTGCAATATTGGGTCAGGATCGGGTAATCTGCA 3.10E−04 2.82 (−) GAGGTCTA/158TCCTGAGGTCTAGATAAGTATATCTCCGTTGC AGCTAGTCCTCTGGTTGCAGATTACTTCTTCCTCACTGCCAATGC/253 zma-miR167u TGAAGCTGCCACTGAAGCTGCCACATGATCTGATGACGCAGAG 2.20E−05 1.57 (−) ATGATCTG/159TCATGCATATGCATTGCATCCAGCAAGCTCC ATGCGTGCGTGCATGGCCGAATGGCCGAAGAGACTAGCTAGTCCATCTCTCCAAGGCCATCC ACGTGTGAGAATTCAATTCCTCGTGGATCAGATCAGGCTGTTGTTGACAACTGCATGCCGCA CCTGCACTACAGCAACCCAAGGCATAGGTAGCTAGCTAGGTTTCGGTGGTCAGATCAGATCA GGCTGGCAGCTTCA/254 zma-miR396b-GTTCAATAAAGCT AGATGGCCTTCTTTGTGATCTTCCACAGCTTT 7.90E−09 6.05 (−) 3pGTGGGAAA/160 CTTGAACTGCATCTCTCAGAGGAGCGGCAGCTTCAACTCCTCCACCCGCATCAGCAGGTGCA TGCAGTTCAATAAAGCTGTGGGAAACTGCAGAGAGAGGCCAG/255 zma-miR398a- GGGGCGAACTGA GGGGGCGAACUGAGAACACAUGAGAAUAAU3.00E−04 1.89 (−) 5p GAACACATG/161 GAGAUGAGAUUGCUCGCCUCGCGGUACGGUUCGUGCUGGCCUGGACCACCGUCGUCGCCG UUCAUCUUGUACGCAUAAUAAUGCUGCAUGUGUUCUCAGGUCGCCCCCGC/11955

TABLE 5Differentially Expressed (Up-regulated) Small RNAs in Soybean PlantsGrowing under Heat Shock (1 hour) versus Optimal Conditions. Fold-miR Name Mature Sequence Stem Loop Sequence p-Value Change aly-miR831-AGAAGAGGTACAAGG AAGTGCTACAAGAATGTATAGTCTTAGAG 4.20E−05 1.73 (+) 5pAGATGAGA/162 TCTCAAGAAGAGGTACAAGGAGATGAGA AGTGAATCACTGAAACAAGTGGTTCTGGTTTGTGGATCAGTATGGTTTACCCAAAACA CGTGTTTGGTGCTTCACTTCTAAACTCCTCGTACTCTTCTTGGGATTCTATGACTTACAC TTGTTGATTT/256 ath- TTAGCTGAAGAAGCATTTGTTTGTTTAGCTGAAGAAGCAGAGGA 2.10E−05 1.76 (+) miRf10687- GAGGAG/163GTCGGCATTGGGGCACAGTCACTCATCGA akr TGCTGCAATGGGTAAGTCCTCTGCATACTTTTGCTGAGATAGGAATAGA/11956 ath- GAGGTTTGCGATGAGGATGTTGGAGGTTTGCGATGAGAAAGAGA 2.10E−07 1.82 (+) miRf11021- AAAGAG/164TTGGCCGGAAGAATTATCAGCCATCAACA akr TCGAGATTGTGAGATAATCGGAAGACCTGTAATTGTGAAGGTAACTCTTTCTCATCTGC AAATCTCAACTGTC/11957 far-miR1134CGACAACAACAACAA ACGGCAATCCCAGCTTCAACGGGCCGGTG 2.80E−04 1.63 (+)GAAGAAGAG/165 CCAGGCGTGCCTCCCGGCGATGCCCATCGGTCGCCGACGCCTCCTAGCACGCCAGCTG GCTCACAAGGTGTCTCTCCCGGCGGCGACAACAACAACAAGAAGAAGAGATCAGGTC TGGTGCTGGCTACTACCATCCCGGTCTCAGTCAGTGTGGTGGCGCTCATCTCGCTGGG TGCCGTGCTGCTCTTCCGCAAGAAAAACAACGGGTCCG/257 osa- TTGGCCTCGTCGAAGA TCTCGTTCTTGGAGAGGCCCTTGCCGACCT1.90E−06 2.01 (+) miRf10105- AGGAGA/166 TGGCGATGCGCTTGCCGGCCCTGGACCAGakr CGGGACGCCGCGGTCTCCTGCTTGGCCTC GTCGAAGAAGGAGA/11958 pab-TGGCGCTAGAAGGAG AAATGGCGCTAGAAGGAGGGCCTGAAAA 6.60E−05 1.68 (+) miR3711GGCCT/167 TTATTAATGGCACGAGGCAGTCGTAAGAC TCCTCCACCACCCAACCACTCACCTATAGTGAAAAGAAGTCATTAAAATGATAACATCA CCCCTCAAATAGAACCA/258 zma- TGGGAGATGAAGGAGAGTGGGAGATGAAGGAGCCTTGCATCGAT 8.20E−07 2.05 (+) miR482-5p CCTT/168GTCACCGCCGGAGGAGCGCTCGCCTTCTT CGCGCACCGCCGCAATAGCCGCCCTCGGACCCCTCGCCTCGCTCTTCCTTGTTCCTCCC ATTTT/259

TABLE 6Differentially Expressed (Down-regulated) Small RNAs in Soybean PlantsGrowing under Heat Shock (1 hour) versus Optimal Conditions. Fold-miR Name Mature Sequence Stem Loop Sequence p-Value Changeath-miRf10279- ACTCAGCCTGGGG TGATGGTGATACTCGACATCCAGGTAGA 1.30E−022.56 (−) akr GTCGAGTGAT/169 GTGATGAGGTCGAGTAGAGGTCTGGCAATGGGATGAAGTCACTCAGCCTGGGGGTC GAGTGATGTGATCG/11959 csi-miR162-5pTGGAGGCAGCGGT AAACTGTTTACACTGATCTGTGCTGCTG 4.10E−05 1.71 (−)TCATCGATC/170 ATAAATCTTAATTTTTTTTTTTGAATTTTT ATTTAACAGAAAATAGAGAGAGTGAAGTCACTGGAGGCAGCGGTTCATCGATCAC TTTGTGCAAATTTTGTTGTGAAAAATAACACAAAATACATGAATCGATCGATAAAC CTCTGCATCCAGCGCTCACTCCAACTCTA TTC/260gma-miR4412- AGTGGCGTAGATC AACTGTTGCGGGTATCTTTGCCTCTGAA 1.60E−051.81 (−) 3p CCCACAAC/171 GGAAAGTTGTGCCTATTATTATGGCTTATTGCTTTAGTGGCGTAGATCCCCACAACA GTT/261 osa-miRf10151- TGGCTATATTTTGGGTATACTACCTCCGTCCCAAAATATAGC 3.60E−03 2.06 (−) akr GACGGAG/172CACTTTTAGATTCATAAACAAAAGTGGC TATATTTTGGGACGGAGGGAGTATAT/ 11960ptc-miRf12069- GGAGGGGCTGCAA CTTGGGCCAGGAGGGGCTGCAAGACCCA 1.90E−032.03 (−) akr GACCCAAG/173 AGTGACTTGGGTCTGCGCTCTTGCCACACCCAAGCAACTTGGGTCAGACGCCCTTC CAAGCCCCAAG/11961

Example 2 Identification of Homologous and Orthologous Sequences ofDifferential Small RNAs Associated with Enhanced Abiotic StressTolerance

The miRNA sequences of the invention that were either down- orup-regulated under abiotic stress conditions were examined forhomologous and orthologous sequences using the miRBase database(http://wwwDOTmirbaseDOTorg/) and the Plant MicroRNA Database (PMRD,http://bioinformaticsDOTcauDOTeduDOTcn/PMRD). The mature miRNA sequencesthat are homologous or orthologous to the soy miRNAs listed in Tables1-6 above, were found using miRNA public databases, having at least 75%identity of the entire mature miRNA length of the original soy sequencelisted in Tables 1-6 and are summarized in Tables 7-8 below.

TABLE 7Summary of Homologs/Orthologs to Small RNAs which are up-regulatedin Abiotic Stress in Soybean Plants. Homolog Sequence/SEQ %Homolog stem-loop Mir Name Homolog Name ID NO: Identitysequence/SEQ ID NO: far- tae-miR1134 CAACAACAACAAGAAG 0.88 2087 miR1134AAGAAGAT/262 mtr- gma-miR2119 TCAAAGGGAGTTGTAG 0.76 2088 miR2119GGGAA/263 pvu-miR2119 TCAAAGGGAGTTGTAG 0.76 2089 GGGAA/264 ppt-ppt-miR1220b TTCCGGTGGTGAGGAAG 1 2090 miR1220a ATAG/265 aqc- acb-miR159TTGGACTGAAGGGAGCT 0.86 2091 miR159 CCCT/266 aha-miR159 TTGGACTGAAGGGAGCT0.86 2092 CCCT/267 ahi-miR159 TTGGACTGAAGGGAGCT 0.86 2093 CCCT/268ahy-miR159 TTTGGATTGAAGGGAGC 0.95 2094 TCTA/269 aly-miR159aTTTGGATTGAAGGGAGC 0.95 2095 TCTA/270 aly-miR159b TTTGGATTGAAGGGAGC 0.92096 TCTT/271 aly-miR159c TTTGGATTGAAGGGAGC 0.86 2097 TCCT/272ape-miR159 TTGGACTGAAGGGAGCT 0.86 2098 CCCT/273 ath-miR159aTTTGGATTGAAGGGAGC 0.95 2099 TCTA/274 ath-miR159b TTTGGATTGAAGGGAGC 0.92100 TCTT/275 ath-miR159c TTTGGATTGAAGGGAGC 0.86 2101 TCCT/276bdi-miR159 CTTGGATTGAAGGGAGC 0.86 2102 TCT/277 bna-miR159TTTGGATTGAAGGGAGC 0.95 2103 TCTA/278 bra-miR159a TTTGGATTGAAGGGAGC 0.952104 TCTA/279 bvl-miR159 TTGGACTGAAGGGAGCT 0.86 2105 CCCT/280 cmi-miR159TTGGACTGAAGGGAGCT 0.86 2106 CCCT/281 cor-miR159 TTGGACTGAAGGGAGCT 0.862107 CCCT/282 crb-miR159 TTGGACTGAAGGGAGCT 0.86 2108 CCCT/283 csi-miR159TTTGGATTGAAGGGAGC 0.95 2109 TCTA/284 dso-miR159 TTGGACTGAAGGGAGCT 0.862110 CCCT/285 ech-miR159 TTGGACTGAAGGGAGCT 0.86 2111 CCCT/286 fal-miR159TTGGACTGAAGGGAGCT 0.86 2112 CCCT/287 far-miR159 TTTGGATTGAAGGGAGC 0.92113 TCTG/288 gma-miR159a-3p TTTGGATTGAAGGGAGC 0.95 2114 TCTA/289gma-miR159b ATTGGAGTGAAGGGAG 0.86 2115 CTCCA/290 gma-miR159cATTGGAGTGAAGGGAG 0.81 2116 CTCCG/291 hvu-miR159a TTTGGATTGAAGGGAGC 0.92117 TCTG/292 hvu-miR159b TTTGGATTGAAGGGAGC 0.9 2118 TCTG/293hvv-miR159a TTTGGATTGAAGGGAGC 0.9 2119 TCTG/294 hvv-miR159bTTTGGATTGAAGGGAGC 0.9 2120 TCTG/295 ltu-miR159 TTTGGATTGAAGGGAGC 0.952121 TCTA/296 mma-miR159 TTGGACTGAAGGGAGCT 0.86 2122 CCCT/297mtr-miR159a TTTGGATTGAAGGGAGC 0.95 2123 TCTA/298 mtr-miR159bATTGAATTGAAGGGAG 0.67 2124 CAACT/299 mtr-miR159c TTTGGATTGAAGGGAGC 0.952125 TCTA/300 nof-miR159 TTGGACTGAAGGGAGCT 0.86 2126 CCCT/301 oru-miR159TTTGGATTGAAGGGAGC 0.9 2127 TCTG/302 osa-miR159a TTTGGATTGAAGGGAGC 0.92128 TCTG/303 osa-miR159a.1 TTTGGATTGAAGGGAGC 0.9 2129 TCTG/304osa-miR159b TTTGGATTGAAGGGAGC 0.9 2130 TCTG/305 osa-miR159cATTGGATTGAAGGGAG 0.86 2131 CTCCA/306 osa-miR159d ATTGGATTGAAGGGAG 0.812132 CTCCG/307 osa-miR159e ATTGGATTGAAGGGAG 0.81 2133 CTCCT/308osa-miR159f CTTGGATTGAAGGGAGC 0.9 2134 TCTA/309 osa-miR159mTTTGGATTGAAGGGAGC 0.9 2135 TCTG/310 pgl-miR159 TTTGGATTGAAGGGAGC 0.92136 TCTG/311 psi-miR159 CTTGGATTGAAGGGAGC 0.86 2137 TCCA/312pta-miR159a TTGGATTGAAGGGAGCT 0.86 2138 CCA/313 pta-miR159bTTGGATTGAAGAGAGCT 0.76 2139 CCC/314 pta-miR159c CTTGGATTGAAGGGAGC 0.812140 TCCC/315 ptc-miR159a TTTGGATTGAAGGGAGC 0.95 2141 TCTA/316ptc-miR159b TTTGGATTGAAGGGAGC 0.95 2142 TCTA/317 ptc-miR159cTTTGGATTGAAGGGAGC 0.95 2143 TCTA/318 ptc-miR159d CTTGGATTGAAGGGAGC 0.812144 TCCT/319 ptc-miR159e CTTGGGGTGAAGGGAG 0.76 2145 CTCCT/320ptc-miR159f ATTGGAGTGAAGGGAG 0.86 2146 CTCGA/321 pvu-miR159TTTGGATTGAAGGGAGC 0.95 2147 TCTA/322 pvu-miR159a.1 TTTGGATTGAAGGGAGC0.95 2148 TCTA/323 rco-miR159 TTTGGATTGAAGGGAGC 0.95 2149 TCTA/324rin-miR159 TTGGACTGAAGGGAGCT 0.86 2150 CCCT/325 sar-miR159TTTGGATTGAAGGGAGC 0.9 2151 TCTG/326 sbi-miR159a TTTGGATTGAAGGGAGC 0.92152 TCTG/327 sbi-miR159b CTTGGATTGAAGGGAGC 0.81 2153 TCCT/328sly-miR159 TTTGGATTGAAGGGAGC 0.95 2154 TCTA/329 smo-miR159CTTGGATTGAAGGGAGC 0.81 2155 TCCC/330 sof-miR159a TTTGGATTGAAGGGAGC 0.92156 TCTG/331 sof-miR159b TTTGGATTGAAGGGAGC 0.9 2157 TCTG/332sof-miR159c CTTGGATTGAAGGGAGC 0.81 2158 TCCT/333 sof-miR159dTTTGGATTGAAGGGAGC 0.9 2159 TCTG/334 sof-miR159e TTTGGATTGAAAGGAGC 0.862160 TCTT/335 spr-miR159 TTTGGATTGAAGGGAGC 0.9 2161 TCTG/336 ssp-miR159aTTTGGATTGAAGGGAGC 0.9 2162 TCTG/337 svi-miR159 TTGGACTGAAGGGAGCT 0.862163 CCCT/338 tae-miR159a TTTGGATTGAAGGGAGC 0.9 2164 TCTG/339tae-miR159b TTTGGATTGAAGGGAGC 0.9 2165 TCTG/340 tar-miR159TTGGACTGAAGGGAGCT 0.86 2166 CCCT/341 vvi-miR159a CTTGGAGTGAAGGGAG 0.862167 CTCTC/342 vvi-miR159b CTTGGAGTGAAGGGAG 0.86 2168 CTCTC/343vvi-miR159c TTTGGATTGAAGGGAGC 0.95 2169 TCTA/344 zma-miR159aTTTGGATTGAAGGGAGC 0.9 2170 TCTG/345 zma-miR159b TTTGGATTGAAGGGAGC 0.92171 TCTG/346 zma-miR159c CTTGGATTGAAGGGAGC 0.81 2172 TCCT/347zma-miR159d CTTGGATTGAAGGGAGC 0.81 2173 TCCT/348 zma-miR159eATTGGTTTGAAGGGAGC 0.81 2174 TCCA/349 zma-miR159f TTTGGATTGAAGGGAGC 0.92175 TCTG/350 zma-miR159g TTTGGAGTGAAGGGAGT 0.86 2176 TCTG/351zma-miR159h TTTGGAGTGAAGGGAG 0.9 2177 CTCTG/352 zma-miR159iTTTGGAGTGAAGGGAG 0.9 2178 CTCTG/353 zma-miR159j TTTGGATTGAAGGGAGC 0.92179 TCTG/354 zma-miR159k TTTGGATTGAAGGGAGC 0.9 2180 TCTG/355zma-miR159m TTTGGATTGAAGGGAGC 0.9 2181 TCTG/356 ath- acb-miR159TTGGACTGAAGGGAGCT 0.81 2182 miR159b CCCT/357 aha-miR159TTGGACTGAAGGGAGCT 0.81 2183 CCCT/358 ahi-miR159 TTGGACTGAAGGGAGCT 0.812184 CCCT/359 ahy-miR159 TTTGGATTGAAGGGAGC 0.95 2185 TCTA/360aly-miR159a TTTGGATTGAAGGGAGC 0.95 2186 TCTA/361 aly-miR159bTTTGGATTGAAGGGAGC 1 2187 TCTT/362 aly-miR159c TTTGGATTGAAGGGAGC 0.952188 TCCT/363 ape-miR159 TTGGACTGAAGGGAGCT 0.81 2189 CCCT/364 aqc-miR159TTTGGACTGAAGGGAGC 0.9 2190 TCTA/365 ath-miR159a TTTGGATTGAAGGGAGC 0.952191 TCTA/366 ath-miR159c TTTGGATTGAAGGGAGC 0.95 2192 TCCT/367bdi-miR159 CTTGGATTGAAGGGAGC 0.9 2193 TCT/368 bna-miR159TTTGGATTGAAGGGAGC 0.95 2194 TCTA/369 bra-miR159a TTTGGATTGAAGGGAGC 0.952195 TCTA/370 byl-miR159 TTGGACTGAAGGGAGCT 0.81 2196 CCCT/371 cmi-miR159TTGGACTGAAGGGAGCT 0.81 2197 CCCT/372 cor-miR159 TTGGACTGAAGGGAGCT 0.812198 CCCT/373 crb-miR159 TTGGACTGAAGGGAGCT 0.81 2199 CCCT/374 csi-miR159TTTGGATTGAAGGGAGC 0.95 2200 TCTA/375 dso-miR159 TTGGACTGAAGGGAGCT 0.812201 CCCT/376 ech-miR159 TTGGACTGAAGGGAGCT 0.81 2202 CCCT/377 fal-miR159TTGGACTGAAGGGAGCT 0.81 2203 CCCT/378 far-miR159 TTTGGATTGAAGGGAGC 0.952204 TCTG/379 gma-miR159a-3p TTTGGATTGAAGGGAGC 0.95 2205 TCTA/380gma-miR159b ATTGGAGTGAAGGGAG 0.81 2206 CTCCA/381 gma-miR159cATTGGAGTGAAGGGAG 0.81 2207 CTCCG/382 hvu-miR159a TTTGGATTGAAGGGAGC 0.952208 TCTG/383 hvu-miR159b TTTGGATTGAAGGGAGC 0.95 2209 TCTG/384hvv-miR159a TTTGGATTGAAGGGAGC 0.95 2210 TCTG/385 hvv-miR159bTTTGGATTGAAGGGAGC 0.95 2211 TCTG/386 ltu-miR159 TTTGGATTGAAGGGAGC 0.952212 TCTA/387 mma-miR159 TTGGACTGAAGGGAGCT 0.81 2213 CCCT/388mtr-miR159a TTTGGATTGAAGGGAGC 0.95 2214 TCTA/389 mtr-miR159bATTGAATTGAAGGGAG 0.76 2215 CAACT/390 mtr-miR159c TTTGGATTGAAGGGAGC 0.952216 TCTA/391 nof-miR159 TTGGACTGAAGGGAGCT 0.81 2217 CCCT/392 oru-miR159TTTGGATTGAAGGGAGC 0.95 2218 TCTG/393 osa-miR159a TTTGGATTGAAGGGAGC 0.952219 TCTG/394 osa-miR159a.1 TTTGGATTGAAGGGAGC 0.95 2220 TCTG/395osa-miR159b TTTGGATTGAAGGGAGC 0.95 2221 TCTG/396 osa-miR159cATTGGATTGAAGGGAG 0.86 2222 CTCCA/397 osa-miR159d ATTGGATTGAAGGGAG 0.862223 CTCCG/398 osa-miR159e ATTGGATTGAAGGGAG 0.9 2224 CTCCT/399osa-miR159f CTTGGATTGAAGGGAGC 0.9 2225 TCTA/400 osa-miR159mTTTGGATTGAAGGGAGC 0.95 2226 TCTG/401 pgl-miR159 TTTGGATTGAAGGGAGC 0.952227 TCTG/402 psi-miR159 CTTGGATTGAAGGGAGC 0.86 2228 TCCA/403pta-miR159a TTGGATTGAAGGGAGCT 0.86 2229 CCA/404 pta-miR159bTTGGATTGAAGAGAGCT 0.81 2230 CCC/405 pta-miR159c CTTGGATTGAAGGGAGC 0.862231 TCCC/406 ptc-miR159a TTTGGATTGAAGGGAGC 0.95 2232 TCTA/407ptc-miR159b TTTGGATTGAAGGGAGC 0.95 2233 TCTA/408 ptc-miR159cTTTGGATTGAAGGGAGC 0.95 2234 TCTA/409 ptc-miR159d CTTGGATTGAAGGGAGC 0.92235 TCCT/410 ptc-miR159e CTTGGGGTGAAGGGAG 0.81 2236 CTCCT/411ptc-miR159f ATTGGAGTGAAGGGAG 0.81 2237 CTCGA/412 pvu-miR159TTTGGATTGAAGGGAGC 0.95 2238 TCTA/413 pvu-miR159a.1 TTTGGATTGAAGGGAGC0.95 2239 TCTA/414 rco-miR159 TTTGGATTGAAGGGAGC 0.95 2240 TCTA/415rin-miR159 TTGGACTGAAGGGAGCT 0.81 2241 CCCT/416 sar-miR159TTTGGATTGAAGGGAGC 0.95 2242 TCTG/417 sbi-miR159a TTTGGATTGAAGGGAGC 0.952243 TCTG/418 sbi-miR159b CTTGGATTGAAGGGAGC 0.9 2244 TCCT/419 sly-miR159TTTGGATTGAAGGGAGC 0.95 2245 TCTA/420 smo-miR159 CTTGGATTGAAGGGAGC 0.862246 TCCC/421 sof-miR159a TTTGGATTGAAGGGAGC 0.95 2247 TCTG/422sof-miR159b TTTGGATTGAAGGGAGC 0.95 2248 TCTG/423 sof-miR159cCTTGGATTGAAGGGAGC 0.9 2249 TCCT/424 sof-miR159d TTTGGATTGAAGGGAGC 0.952250 TCTG/425 sof-miR159e TTTGGATTGAAAGGAGC 0.95 2251 TCTT/426spr-miR159 TTTGGATTGAAGGGAGC 0.95 2252 TCTG/427 ssp-miR159aTTTGGATTGAAGGGAGC 0.95 2253 TCTG/428 svi-miR159 TTGGACTGAAGGGAGCT 0.812254 CCCT/429 tae-miR159a TTTGGATTGAAGGGAGC 0.95 2255 TCTG/430tae-miR159b TTTGGATTGAAGGGAGC 0.95 2256 TCTG/431 tar-miR159TTGGACTGAAGGGAGCT 0.81 2257 CCCT/432 vvi-miR159a CTTGGAGTGAAGGGAG 0.862258 CTCTC/433 vvi-miR159b CTTGGAGTGAAGGGAG 0.86 2259 CTCTC/434vvi-miR159c TTTGGATTGAAGGGAGC 0.95 2260 TCTA/435 zma-miR159aTTTGGATTGAAGGGAGC 0.95 2261 TCTG/436 zma-miR159b TTTGGATTGAAGGGAGC 0.952262 TCTG/437 zma-miR159c CTTGGATTGAAGGGAGC 0.9 2263 TCCT/438zma-miR159d CTTGGATTGAAGGGAGC 0.9 2264 TCCT/439 zma-miR159eATTGGTTTGAAGGGAGC 0.81 2265 TCCA/440 zma-miR159f TTTGGATTGAAGGGAGC 0.952266 TCTG/441 zma-miR159g TTTGGAGTGAAGGGAGT 0.86 2267 TCTG/442zma-miR159h TTTGGAGTGAAGGGAG 0.9 2268 CTCTG/443 zma-miR159iTTTGGAGTGAAGGGAG 0.9 2269 CTCTG/444 zma-miR159j TTTGGATTGAAGGGAGC 0.952270 TCTG/445 zma-miR159k TTTGGATTGAAGGGAGC 0.95 2271 TCTG/446zma-miR159m TTTGGATTGAAGGGAGC 0.95 2272 TCTG/447 ath- acb-miR159TTGGACTGAAGGGAGCT 0.86 2273 miR159c CCCT/448 aha-miR159TTGGACTGAAGGGAGCT 0.86 2274 CCCT/449 ahi-miR159 TTGGACTGAAGGGAGCT 0.862275 CCCT/450 ahy-miR159 TTTGGATTGAAGGGAGC 0.9 2276 TCTA/451 aly-miR159aTTTGGATTGAAGGGAGC 0.9 2277 TCTA/452 aly-miR159b TTTGGATTGAAGGGAGC 0.952278 TCTT/453 aly-miR159c TTTGGATTGAAGGGAGC 1 2279 TCCT/454 ape-miR159TTGGACTGAAGGGAGCT 0.86 2280 CCCT/455 aqc-miR159 TTTGGACTGAAGGGAGC 0.862281 TCTA/456 ath-miR159a TTTGGATTGAAGGGAGC 0.9 2282 TCTA/457ath-miR159b TTTGGATTGAAGGGAGC 0.95 2283 TCTT/458 bdi-miR159CTTGGATTGAAGGGAGC 0.86 2284 TCT/459 bna-miR159 TTTGGATTGAAGGGAGC 0.92285 TCTA/460 bra-miR159a TTTGGATTGAAGGGAGC 0.9 2286 TCTA/461 byl-miR159TTGGACTGAAGGGAGCT 0.86 2287 CCCT/462 cmi-miR159 TTGGACTGAAGGGAGCT 0.862288 CCCT/463 cor-miR159 TTGGACTGAAGGGAGCT 0.86 2289 CCCT/464 crb-miR159TTGGACTGAAGGGAGCT 0.86 2290 CCCT/465 csi-miR159 TTTGGATTGAAGGGAGC 0.92291 TCTA/466 dso-miR159 TTGGACTGAAGGGAGCT 0.86 2292 CCCT/467 ech-miR159TTGGACTGAAGGGAGCT 0.86 2293 CCCT/468 fal-miR159 TTGGACTGAAGGGAGCT 0.862294 CCCT/469 far-miR159 TTTGGATTGAAGGGAGC 0.9 2295 TCTG/470gma-miR159a-3p TTTGGATTGAAGGGAGC 0.9 2296 TCTA/471 gma-miR159bATTGGAGTGAAGGGAG 0.86 2297 CTCCA/472 gma-miR159c ATTGGAGTGAAGGGAG 0.862298 CTCCG/473 hvu-miR159a TTTGGATTGAAGGGAGC 0.9 2299 TCTG/474hvu-miR159b TTTGGATTGAAGGGAGC 0.9 2300 TCTG/475 hvv-miR159aTTTGGATTGAAGGGAGC 0.9 2301 TCTG/476 hvv-miR159b TTTGGATTGAAGGGAGC 0.92302 TCTG/477 ltu-miR159 TTTGGATTGAAGGGAGC 0.9 2303 TCTA/478 mma-miR159TTGGACTGAAGGGAGCT 0.86 2304 CCCT/479 mtr-miR159a TTTGGATTGAAGGGAGC 0.92305 TCTA/480 mtr-miR159b ATTGAATTGAAGGGAG 0.81 2306 CAACT/481mtr-miR159c TTTGGATTGAAGGGAGC 0.9 2307 TCTA/482 nof-miR159TTGGACTGAAGGGAGCT 0.86 2308 CCCT/483 oru-miR159 TTTGGATTGAAGGGAGC 0.92309 TCTG/484 osa-miR159a TTTGGATTGAAGGGAGC 0.9 2310 TCTG/485osa-miR159a.1 TTTGGATTGAAGGGAGC 0.9 2311 TCTG/486 osa-miR159bTTTGGATTGAAGGGAGC 0.9 2312 TCTG/487 osa-miR159c ATTGGATTGAAGGGAG 0.92313 CTCCA/488 osa-miR159d ATTGGATTGAAGGGAG 0.9 2314 CTCCG/489osa-miR159e ATTGGATTGAAGGGAG 0.95 2315 CTCCT/490 osa-miR159fCTTGGATTGAAGGGAGC 0.86 2316 TCTA/491 osa-miR159m TTTGGATTGAAGGGAGC 0.92317 TCTG/492 pgl-miR159 TTTGGATTGAAGGGAGC 0.9 2318 TCTG/493 psi-miR159CTTGGATTGAAGGGAGC 0.9 2319 TCCA/494 pta-miR159a TTGGATTGAAGGGAGCT 0.92320 CCA/495 pta-miR159b TTGGATTGAAGAGAGCT 0.86 2321 CCC/496 pta-miR159cCTTGGATTGAAGGGAGC 0.9 2322 TCCC/497 ptc-miR159a TTTGGATTGAAGGGAGC 0.92323 TCTA/498 ptc-miR159b TTTGGATTGAAGGGAGC 0.9 2324 TCTA/499ptc-miR159c TTTGGATTGAAGGGAGC 0.9 2325 TCTA/500 ptc-miR159dCTTGGATTGAAGGGAGC 0.95 2326 TCCT/501 ptc-miR159e CTTGGGGTGAAGGGAG 0.862327 CTCCT/502 ptc-miR159f ATTGGAGTGAAGGGAG 0.81 2328 CTCGA/503pvu-miR159 TTTGGATTGAAGGGAGC 0.9 2329 TCTA/504 pvu-miR159a.1TTTGGATTGAAGGGAGC 0.9 2330 TCTA/505 rco-miR159 TTTGGATTGAAGGGAGC 0.92331 TCTA/506 rin-miR159 TTGGACTGAAGGGAGCT 0.86 2332 CCCT/507 sar-miR159TTTGGATTGAAGGGAGC 0.9 2333 TCTG/508 sbi-miR159a TTTGGATTGAAGGGAGC 0.92334 TCTG/509 sbi-miR159b CTTGGATTGAAGGGAGC 0.95 2335 TCCT/510sly-miR159 TTTGGATTGAAGGGAGC 0.9 2336 TCTA/511 smo-miR159CTTGGATTGAAGGGAGC 0.9 2337 TCCC/512 sof-miR159a TTTGGATTGAAGGGAGC 0.92338 TCTG/513 sof-miR159b TTTGGATTGAAGGGAGC 0.9 2339 TCTG/514sof-miR159c CTTGGATTGAAGGGAGC 0.95 2340 TCCT/515 sof-miR159dTTTGGATTGAAGGGAGC 0.9 2341 TCTG/516 sof-miR159e TTTGGATTGAAAGGAGC 0.92342 TCTT/517 spr-miR159 TTTGGATTGAAGGGAGC 0.9 2343 TCTG/518 ssp-miR159aTTTGGATTGAAGGGAGC 0.9 2344 TCTG/519 svi-miR159 TTGGACTGAAGGGAGCT 0.862345 CCCT/520 tae-miR159a TTTGGATTGAAGGGAGC 0.9 2346 TCTG/521tae-miR159b TTTGGATTGAAGGGAGC 0.9 2347 TCTG/522 tar-miR159TTGGACTGAAGGGAGCT 0.86 2348 CCCT/523 vvi-miR159a CTTGGAGTGAAGGGAG 0.812349 CTCTC/524 vvi-miR159b CTTGGAGTGAAGGGAG 0.81 2350 CTCTC/525vvi-miR159c TTTGGATTGAAGGGAGC 0.9 2351 TCTA/526 zma-miR159aTTTGGATTGAAGGGAGC 0.9 2352 TCTG/527 zma-miR159b TTTGGATTGAAGGGAGC 0.92353 TCTG/528 zma-miR159c CTTGGATTGAAGGGAGC 0.95 2354 TCCT/529zma-miR159d CTTGGATTGAAGGGAGC 0.95 2355 TCCT/530 zma-miR159eATTGGTTTGAAGGGAGC 0.86 2356 TCCA/531 zma-miR159f TTTGGATTGAAGGGAGC 0.92357 TCTG/532 zma-miR159g TTTGGAGTGAAGGGAGT 0.81 2358 TCTG/533zma-miR159h TTTGGAGTGAAGGGAG 0.86 2359 CTCTG/534 zma-miR159iTTTGGAGTGAAGGGAG 0.86 2360 CTCTG/535 zma-miR159j TTTGGATTGAAGGGAGC 0.92361 TCTG/536 zma-miR159k TTTGGATTGAAGGGAGC 0.9 2362 TCTG/537zma-miR159m TTTGGATTGAAGGGAGC 0.9 2363 TCTG/538 ath- gma-miRf10687-TTAGCCGCAGAGGCAG 0.86 11615 miRf10687- akr-homolog AGGAG/11616 akr ghr-vvi-miR2950* TGGTGTGCACGGGATGG 0.9 2364 miR2950 AATA/539 gma-ahy-miR156a TGACAGAAGAGAGAGA 0.85 2365 miR156g GCAC/540 ahy-miR156b-5pTTGACAGAAGATAGAG 0.9 2366 AGCAC/541 ahy-miR156c TTGACAGAAGAGAGAG 0.852367 AGCAC/542 aly-miR156a TGACAGAAGAGAGTGA 0.8 2368 GCAC/543aly-miR156b TGACAGAAGAGAGTGA 0.8 2369 GCAC/544 aly-miR156cTGACAGAAGAGAGTGA 0.8 2370 GCAC/545 aly-miR156d TGACAGAAGAGAGTGA 0.8 2371GCAC/546 aly-miR156e TGACAGAAGAGAGTGA 0.8 2372 GCAC/547 aly-miR156fTGACAGAAGAGAGTGA 0.8 2373 GCAC/548 aly-miR156g CGACAGAAGAGAGTGA 0.8 2374GCAC/549 aly-miR156h TGACAGAAGAAAGAGA 0.85 2375 GCAC/550 aqc-miR156aTGACAGAAGATAGAGA 0.9 2376 GCAC/551 aqc-miR156b TGACAGAAGATAGAGA 0.9 2377GCAC/552 ath-miR156a TGACAGAAGAGAGTGA 0.8 2378 GCAC/553 ath-miR156bTGACAGAAGAGAGTGA 0.8 2379 GCAC/554 ath-miR156c TGACAGAAGAGAGTGA 0.8 2380GCAC/555 ath-miR156d TGACAGAAGAGAGTGA 0.8 2381 GCAC/556 ath-miR156eTGACAGAAGAGAGTGA 0.8 2382 GCAC/557 ath-miR156f TGACAGAAGAGAGTGA 0.8 2383GCAC/558 ath-miR156g CGACAGAAGAGAGTGA 0.8 2384 GCAC/559 ath-miR156hTGACAGAAGAAAGAGA 0.85 2385 GCAC/560 bdi-miR156 TGACAGAAGAGAGAGA 0.9 2386GCACA/561 bdi-miR156b TGACAGAAGAGAGTGA 0.8 2387 GCAC/562 bdi-miR156cTGACAGAAGAGAGTGA 0.8 2388 GCAC/563 bdi-miR156d TGACAGAAGAGAGTGA 0.8 2389GCAC/564 bna-miR156a TGACAGAAGAGAGTGA 0.85 2390 GCACA/565 bna-miR156bTTGACAGAAGATAGAG 0.9 2391 AGCAC/566 bna-miR156c TTGACAGAAGATAGAG 0.92392 AGCAC/567 csi-miR156 TGACAGAAGAGAGTGA 0.8 2393 GCAC/568 ctr-miR156TGACAGAAGAGAGTGA 0.8 2394 GCAC/569 far-miR156a TGACAGAAGAGAGAGA 0.9 2395GCACA/570 far-miR156b TTGACAGAAGAGAGAG 0.85 2396 AGCAC/571 ghr-miR156aTGACAGAAGAGAGTGA 0.8 2397 GCAC/572 ghr-miR156b TGACAGAAGAGAGTGA 0.8 2398GCAC/573 ghr-miR156c TGTCAGAAGAGAGTGA 0.75 2399 GCAC/574 ghr-miR156dTGACAGAAGAGAGTGA 0.8 2400 GCAC/575 gma-miR156a TGACAGAAGAGAGTGA 0.8 2401GCAC/576 gma-miR156b TGACAGAAGAGAGAGA 0.9 2402 GCACA/577 gma-miR156cTTGACAGAAGATAGAG 0.9 2403 AGCAC/578 gma-miR156d TTGACAGAAGATAGAG 0.92404 AGCAC/579 gma-miR156e TTGACAGAAGATAGAG 0.9 2405 AGCAC/580gma-miR156f TTGACAGAAGAGAGAG 0.9 2406 AGCACA/581 hvu-miR156TGACAGAAGAGAGTGA 0.85 2407 GCACA/582 mtr-miR156 TGACAGAAGAGAGAGA 0.92408 GCACA/583 mtr-miR156b TGACAGAAGAGAGTGA 0.8 2409 GCAC/584mtr-miR156c TGACAGAAGAGAGTGA 0.8 2410 GCAC/585 mtr-miR156dTGACAGAAGAGAGTGA 0.8 2411 GCAC/586 mtr-miR156e TTGACAGAAGATAGAG 0.9 2412AGCAC/587 mtr-miR156f TTGACAGAAGATAGAG 0.9 2413 AGCAC/588 mtr-miR156gTTGACAGAAGATAGAG 0.85 2414 GGCAC/589 mtr-miR156h TTGACAGAAGATAGAG 0.92415 AGCAC/590 mtr-miR156i TGACAGAAGAGAGTGA 0.8 2416 GCAC/591osa-miR156a TGACAGAAGAGAGTGA 0.8 2417 GCAC/592 osa-miR156bTGACAGAAGAGAGTGA 0.8 2418 GCAC/593 osa-miR156c TGACAGAAGAGAGTGA 0.8 2419GCAC/594 osa-miR156d TGACAGAAGAGAGTGA 0.8 2420 GCAC/595 osa-miR156eTGACAGAAGAGAGTGA 0.8 2421 GCAC/596 osa-miR156f TGACAGAAGAGAGTGA 0.8 2422GCAC/597 osa-miR156g TGACAGAAGAGAGTGA 0.8 2423 GCAC/598 osa-miR156hTGACAGAAGAGAGTGA 0.8 2424 GCAC/599 osa-miR156i TGACAGAAGAGAGTGA 0.8 2425GCAC/600 osa-miR156j TGACAGAAGAGAGTGA 0.8 2426 GCAC/601 osa-miR156kTGACAGAAGAGAGAGA 0.9 2427 GCACA/602 osa-miR156l CGACAGAAGAGAGTGA 0.82428 GCATA/603 ppt-miR156a TGACAGAAGAGAGTGA 0.8 2429 GCAC/604ppt-miR156b TGACAGAAGAGAGTGA 0.8 2430 GCAC/605 ppt-miR156cTGACAGAAGAGAGTGA 0.8 2431 GCAC/606 pta-miR156a CAGAAGATAGAGAGCA 0.9 2432CATC/607 pta-miR156b CAGAAGATAGAGAGCA 0.9 2433 CAAC/608 ptc-miR156aTGACAGAAGAGAGTGA 0.8 2434 GCAC/609 ptc-miR156b TGACAGAAGAGAGTGA 0.8 2435GCAC/610 ptc-miR156c TGACAGAAGAGAGTGA 0.8 2436 GCAC/611 ptc-miR156dTGACAGAAGAGAGTGA 0.8 2437 GCAC/612 ptc-miR156e TGACAGAAGAGAGTGA 0.8 2438GCAC/613 ptc-miR156f TGACAGAAGAGAGTGA 0.8 2439 GCAC/614 ptc-miR156gTTGACAGAAGATAGAG 0.9 2440 AGCAC/615 ptc-miR156h TTGACAGAAGATAGAG 0.92441 AGCAC/616 ptc-miR156i TTGACAGAAGATAGAG 0.9 2442 AGCAC/617ptc-miR156j TTGACAGAAGATAGAG 0.9 2443 AGCAC/618 ptc-miR156kTGACAGAAGAGAGGGA 0.8 2444 GCAC/619 rco-miR156a TGACAGAAGAGAGTGA 0.852445 GCACA/620 rco-miR156b TGACAGAAGAGAGTGA 0.85 2446 GCACA/621rco-miR156c TGACAGAAGAGAGTGA 0.85 2447 GCACA/622 rco-miR156dTGACAGAAGAGAGTGA 0.85 2448 GCACA/623 rco-miR156e TGACAGAAGAGAGAGA 0.92449 GCACA/624 rco-miR156f TTGACAGAAGATAGAG 0.9 2450 AGCAC/625rco-miR156g TTGACAGAAGATAGAG 0.9 2451 AGCAC/626 rco-miR156hTTGACAGAAGATAGAG 0.9 2452 AGCAC/627 sbi-miR156a TGACAGAAGAGAGTGA 0.82453 GCAC/628 sbi-miR156b TGACAGAAGAGAGTGA 0.8 2454 GCAC/629 sbi-miR156cTGACAGAAGAGAGTGA 0.8 2455 GCAC/630 sbi-miR156d TGACAGAAGAGAGAGA 0.9 2456GCACA/631 sbi-miR156e TGACAGAAGAGAGCGA 0.8 2457 GCAC/632 sbi-miR156fTGACAGAAGAGAGTGA 0.8 2458 GCAC/633 sbi-miR156g TGACAGAAGAGAGTGA 0.8 2459GCAC/634 sbi-miR156h TGACAGAAGAGAGTGA 0.8 2460 GCAC/635 sbi-miR156iTGACAGAAGAGAGTGA 0.8 2461 GCAC/636 sly-miR156a TTGACAGAAGATAGAG 0.9 2462AGCAC/637 sly-miR156b TTGACAGAAGATAGAG 0.9 2463 AGCAC/638 sly-miR156cTTGACAGAAGATAGAG 0.9 2464 AGCAC/639 smo-miR156a CGACAGAAGAGAGTGA 0.82465 GCAC/640 smo-miR156b CTGACAGAAGATAGAG 0.9 2466 AGCAC/641smo-miR156c TTGACAGAAGAAAGAG 0.85 2467 AGCAC/642 smo-miR156dTTGACAGAAGACAGGG 0.8 2468 AGCAC/643 sof-miR156 TGACAGAAGAGAGTGA 0.8 2469GCAC/644 ssp-miR156 TGACAGAAGAGAGTGA 0.85 2470 GCACA/645 tae-miR156TGACAGAAGAGAGTGA 0.85 2471 GCACA/646 tcc-miR156a TGACAGAAGAGAGAGA 0.92472 GCACA/647 tcc-miR156b TGACAGAAGAGAGTGA 0.8 2473 GCAC/648tcc-miR156c TGACAGAAGAGAGTGA 0.8 2474 GCAC/649 tcc-miR156dTGACAGAAGAGAGTGA 0.8 2475 GCAC/650 tcc-miR156e TTGACAGAAGATAGAG 0.9 2476AGCAC/651 tcc-miR156f TTGACAGAAGATAGAG 0.9 2477 AGCAC/652 tcc-miR156gTGACAGAAGAGAGTGA 0.8 2478 GCAC/653 vvi-miR156a TGACAGAAGAGAGGGA 0.8 2479GCAC/654 vvi-miR156b TGACAGAAGAGAGTGA 0.8 2480 GCAC/655 vvi-miR156cTGACAGAAGAGAGTGA 0.8 2481 GCAC/656 vvi-miR156d TGACAGAAGAGAGTGA 0.8 2482GCAC/657 vvi-miR156e TGACAGAGGAGAGTGA 0.75 2483 GCAC/658 vvi-miR156fTTGACAGAAGATAGAG 0.9 2484 AGCAC/659 vvi-miR156g TTGACAGAAGATAGAG 0.92485 AGCAC/660 vvi-miR156h TGACAGAAGAGAGAGA 0.8 2486 GCAT/661vvi-miR156i TTGACAGAAGATAGAG 0.9 2487 AGCAC/662 zma-miR156aTGACAGAAGAGAGTGA 0.8 2488 GCAC/663 zma-miR156b TGACAGAAGAGAGTGA 0.8 2489GCAC/664 zma-miR156c TGACAGAAGAGAGTGA 0.8 2490 GCAC/665 zma-miR156dTGACAGAAGAGAGTGA 0.8 2491 GCAC/666 zma-miR156e TGACAGAAGAGAGTGA 0.8 2492GCAC/667 zma-miR156f TGACAGAAGAGAGTGA 0.8 2493 GCAC/668 zma-miR156gTGACAGAAGAGAGTGA 0.8 2494 GCAC/669 zma-miR156h TGACAGAAGAGAGTGA 0.8 2495GCAC/670 zma-miR156i TGACAGAAGAGAGTGA 0.8 2496 GCAC/671 zma-miR156jTGACAGAAGAGAGAGA 0.9 2497 GCACA/672 zma-miR156k TGACAGAAGAGAGCGA 0.82498 GCAC/673 zma-miR1561 TGACAGAAGAGAGTGA 0.8 2499 GCAC/674 gma-ahy-miR157a-5p TTGACAGAAGATAGAG 0.95 2500 miR157c AGCAC/675 ahy-miR157kTTGACAGAAGAGAGAG 0.9 2501 AGCAC/676 aly-miR157a TTGACAGAAGATAGAG 0.952502 AGCAC/677 aly-miR157b TTGACAGAAGATAGAG 0.95 2503 AGCAC/678aly-miR157c TTGACAGAAGATAGAG 0.95 2504 AGCAC/679 aly-miR157dTGACAGAAGATAGAGA 0.95 2505 GCAC/680 ath-miR157a TTGACAGAAGATAGAG 0.952506 AGCAC/681 ath-miR157b TTGACAGAAGATAGAG 0.95 2507 AGCAC/682ath-miR157c TTGACAGAAGATAGAG 0.95 2508 AGCAC/683 ath-miR157dTGACAGAAGATAGAGA 0.95 2509 GCAC/684 ath-miR157m TTGACAGAAGAGAGAG 0.92510 AGCAC/685 bol-miR157a TTGACAGAAGATAGAG 0.95 2511 AGCAC/686bra-miR157a TTGACAGAAGATAGAG 0.95 2512 AGCAC/687 can-miR157TTGACAGAAGAGAGAG 0.9 2513 AGCAC/688 ghr-miR157 ATGACAGAAGAGAGAG 0.9 2514AGCAC/689 gma-miR157r TTGACAGAAGAGAGAG 0.9 2515 AGCAC/690 gra-miR157aTTGACAGAAGATAGAG 0.95 2516 AGCAC/691 gra-miR157b TTGACAGAAGATAGAG 0.952517 AGCAC/692 gra-miR157c TTGACAGAAGAGAGAG 0.9 2518 AGCAC/693gra-miR157d TTGACAGAAGAGAGAG 0.9 2519 AGCAC/694 han-miR157aTTGACAGAAGATAGAG 0.95 2520 AGCAC/695 han-miR157b TTGACAGAAGAGAGAG 0.92521 AGCAC/696 iba-miR157 TTGACAGAAGATAGAG 0.9 2522 AGCAT/697ini-miR157a TTGACAGAAGATAGAG 0.9 2523 AGCAT/698 ini-miR157bTTGACAGAAGATAGAG 0.9 2524 AGCAT/699 lja-miR157a TTGACAGAAGATAGAG 0.952525 AGCAC/700 lja-miR157b TTGACAGAAGAGAGAG 0.9 2526 AGCAC/701lja-miR157c TTGACAGAAGATAGAG 0.9 2527 AGCAT/702 lsa-miR157TTGACAGAAGAGAGAG 0.9 2528 AGCAC/703 mtr-miR157 TTGACAGAAGATAGAG 0.9 2529GGCAC/704 nad-miR157a TTGACAGAAGACAGAG 0.95 2530 AGCAC/705 nad-miR157bTTGACAGAAGACAGAG 0.95 2531 AGCAC/706 nad-miR157c TTGACAGAAGACAGAG 0.952532 AGCAC/707 nbe-miR157a TTGACAGAAGAGAGAG 0.9 2533 AGCAC/708nbe-miR157b TTGACAGAAGAGAGAG 0.9 2534 AGCAC/709 nta-miR157TTGACAGAAGATAGAG 0.95 2535 AGCAC/710 pam-miR157 TTGACAGAAGAGAGAG 0.92536 AGCAC/711 par-miR157 TTGACAGAAGAGAGAG 0.9 2537 AGCAC/712 pco-miR157TTGACAGAAGATAGAG 0.9 2538 AGCAT/713 pts-miR157 TTGACAGAAGAGAGAG 0.9 2539AGCAC/714 sbi-miR157 TTGACAGAAGAGAGTG 0.86 2540 AGCAC/715 sin-miR157TTGACAGAAGAGAGAG 0.9 2541 AGCAC/716 sly-miR157a TTGACAGAAGATAGAG 0.92542 AGCAT/717 sly-miR157b TTGACAGAAGATAGAG 0.9 2543 AGCAT/718sly-miR157c TTGACAGAAGATAGAG 0.9 2544 AGCAT/719 stu-miR157aTTGACAGAAGATAGAG 0.95 2545 AGCAC/720 stu-miR157b TTGACAGAAGAGAGAG 0.92546 AGCAC/721 stu-miR157c TTGACAGAAGAGAGAG 0.9 2547 AGCAC/722zel-miR157 TTGACAGAAGAGAGAG 0.9 2548 AGCAC/723 zma-miR157mTTGACAGAAGAGAGAG 0.9 2549 AGCAC/724 iba-miR157 ahy-miR157a-5pTTGACAGAAGATAGAG 0.95 2550 AGCAC/725 ahy-miR157k TTGACAGAAGAGAGAG 0.92551 AGCAC/726 aly-miR157a TTGACAGAAGATAGAG 0.95 2552 AGCAC/727aly-miR157b TTGACAGAAGATAGAG 0.95 2553 AGCAC/728 aly-miR157cTTGACAGAAGATAGAG 0.95 2554 AGCAC/729 aly-miR157d TGACAGAAGATAGAGA 0.92555 GCAC/730 ath-miR157a TTGACAGAAGATAGAG 0.95 2556 AGCAC/731ath-miR157b TTGACAGAAGATAGAG 0.95 2557 AGCAC/732 ath-miR157cTTGACAGAAGATAGAG 0.95 2558 AGCAC/733 ath-miR157d TGACAGAAGATAGAGA 0.92559 GCAC/734 ath-miR157m TTGACAGAAGAGAGAG 0.9 2560 AGCAC/735bol-miR157a TTGACAGAAGATAGAG 0.95 2561 AGCAC/736 bra-miR157aTTGACAGAAGATAGAG 0.95 2562 AGCAC/737 can-miR157 TTGACAGAAGAGAGAG 0.92563 AGCAC/738 ghr-miR157 ATGACAGAAGAGAGAG 0.86 2564 AGCAC/739gma-miR157c TGACAGAAGACTAGAG 0.9 2565 AGCAC/740 gma-miR157rTTGACAGAAGAGAGAG 0.9 2566 AGCAC/741 gra-miR157a TTGACAGAAGATAGAG 0.952567 AGCAC/742 gra-miR157b TTGACAGAAGATAGAG 0.95 2568 AGCAC/743gra-miR157c TTGACAGAAGAGAGAG 0.9 2569 AGCAC/744 gra-miR157dTTGACAGAAGAGAGAG 0.9 2570 AGCAC/745 han-miR157a TTGACAGAAGATAGAG 0.952571 AGCAC/746 han-miR157b TTGACAGAAGAGAGAG 0.9 2572 AGCAC/747ini-miR157a TTGACAGAAGATAGAG 1 2573 AGCAT/748 ini-miR157bTTGACAGAAGATAGAG 1 2574 AGCAT/749 lja-miR157a TTGACAGAAGATAGAG 0.95 2575AGCAC/750 lja-miR157b TTGACAGAAGAGAGAG 0.9 2576 AGCAC/751 lja-miR157cTTGACAGAAGATAGAG 1 2577 AGCAT/752 lsa-miR157 TTGACAGAAGAGAGAG 0.9 2578AGCAC/753 mtr-miR157 TTGACAGAAGATAGAG 0.9 2579 GGCAC/754 nad-miR157aTTGACAGAAGACAGAG 0.9 2580 AGCAC/755 nad-miR157b TTGACAGAAGACAGAG 0.92581 AGCAC/756 nad-miR157c TTGACAGAAGACAGAG 0.9 2582 AGCAC/757nbe-miR157a TTGACAGAAGAGAGAG 0.9 2583 AGCAC/758 nbe-miR157bTTGACAGAAGAGAGAG 0.9 2584 AGCAC/759 nta-miR157 TTGACAGAAGATAGAG 0.952585 AGCAC/760 pam-miR157 TTGACAGAAGAGAGAG 0.9 2586 AGCAC/761 par-miR157TTGACAGAAGAGAGAG 0.9 2587 AGCAC/762 pco-miR157 TTGACAGAAGATAGAG 1 2588AGCAT/763 pts-miR157 TTGACAGAAGAGAGAG 0.9 2589 AGCAC/764 sbi-miR157TTGACAGAAGAGAGTG 0.86 2590 AGCAC/765 sin-miR157 TTGACAGAAGAGAGAG 0.92591 AGCAC/766 sly-miR157a TTGACAGAAGATAGAG 1 2592 AGCAT/767 sly-miR157bTTGACAGAAGATAGAG 1 2593 AGCAT/768 sly-miR157c TTGACAGAAGATAGAG 1 2594AGCAT/769 stu-miR157a TTGACAGAAGATAGAG 0.95 2595 AGCAC/770 stu-miR157bTTGACAGAAGAGAGAG 0.9 2596 AGCAC/771 stu-miR157c TTGACAGAAGAGAGAG 0.92597 AGCAC/772 zel-miR157 TTGACAGAAGAGAGAG 0.9 2598 AGCAC/773zma-miR157m TTGACAGAAGAGAGAG 0.9 2599 AGCAC/774 mdm- gma-miR482b-5pTATGGGGGGATTGGGA 0.62 2600 miR482a- AGGAAT/775 5p mdo-miR482*GGAATGGGCTGTTTGGG 1 2601 AACA/776 pvu-miR482* GGAATGGGCTGATTGG 0.95 2602GAAGCA/777 osa- acb-miR159 TTGGACTGAAGGGAGCT 0.86 2603 miR159e CCCT/778aha-miR159 TTGGACTGAAGGGAGCT 0.86 2604 CCCT/779 ahi-miR159TTGGACTGAAGGGAGCT 0.86 2605 CCCT/780 ahy-miR159 TTTGGATTGAAGGGAGC 0.862606 TCTA/781 aly-miR159a TTTGGATTGAAGGGAGC 0.86 2607 TCTA/782aly-miR159b TTTGGATTGAAGGGAGC 0.9 2608 TCTT/783 aly-miR159cTTTGGATTGAAGGGAGC 0.95 2609 TCCT/784 ape-miR159 TTGGACTGAAGGGAGCT 0.862610 CCCT/785 aqc-miR159 TTTGGACTGAAGGGAGC 0.81 2611 TCTA/786ath-miR159a TTTGGATTGAAGGGAGC 0.86 2612 TCTA/787 ath-miR159bTTTGGATTGAAGGGAGC 0.9 2613 TCTT/788 ath-miR159c TTTGGATTGAAGGGAGC 0.952614 TCCT/789 bdi-miR159 CTTGGATTGAAGGGAGC 0.86 2615 TCT/790 bna-miR159TTTGGATTGAAGGGAGC 0.86 2616 TCTA/791 bra-miR159a TTTGGATTGAAGGGAGC 0.862617 TCTA/792 bvl-miR159 TTGGACTGAAGGGAGCT 0.86 2618 CCCT/793 cmi-miR159TTGGACTGAAGGGAGCT 0.86 2619 CCCT/794 cor-miR159 TTGGACTGAAGGGAGCT 0.862620 CCCT/795 crb-miR159 TTGGACTGAAGGGAGCT 0.86 2621 CCCT/796 csi-miR159TTTGGATTGAAGGGAGC 0.86 2622 TCTA/797 dso-miR159 TTGGACTGAAGGGAGCT 0.862623 CCCT/798 ech-miR159 TTGGACTGAAGGGAGCT 0.86 2624 CCCT/799 fal-miR159TTGGACTGAAGGGAGCT 0.86 2625 CCCT/800 far-miR159 TTTGGATTGAAGGGAGC 0.862626 TCTG/801 gma-miR159a-3p TTTGGATTGAAGGGAGC 0.86 2627 TCTA/802gma-miR159b ATTGGAGTGAAGGGAG 0.9 2628 CTCCA/803 gma-miR159cATTGGAGTGAAGGGAG 0.9 2629 CTCCG/804 hvu-miR159a TTTGGATTGAAGGGAGC 0.862630 TCTG/805 hvu-miR159b TTTGGATTGAAGGGAGC 0.86 2631 TCTG/806hvv-miR159a TTTGGATTGAAGGGAGC 0.86 2632 TCTG/807 hvv-miR159bTTTGGATTGAAGGGAGC 0.86 2633 TCTG/808 ltu-miR159 TTTGGATTGAAGGGAGC 0.862634 TCTA/809 mma-miR159 TTGGACTGAAGGGAGCT 0.86 2635 CCCT/810mtr-miR159a TTTGGATTGAAGGGAGC 0.86 2636 TCTA/811 mtr-miR159bATTGAATTGAAGGGAG 0.86 2637 CAACT/812 mtr-miR159c TTTGGATTGAAGGGAGC 0.862638 TCTA/813 nof-miR159 TTGGACTGAAGGGAGCT 0.86 2639 CCCT/814 oru-miR159TTTGGATTGAAGGGAGC 0.86 2640 TCTG/815 osa-miR159a TTTGGATTGAAGGGAGC 0.862641 TCTG/816 osa-miR159a.1 TTTGGATTGAAGGGAGC 0.86 2642 TCTG/817osa-miR159b TTTGGATTGAAGGGAGC 0.86 2643 TCTG/818 osa-miR159cATTGGATTGAAGGGAG 0.95 2644 CTCCA/819 osa-miR159d ATTGGATTGAAGGGAG 0.952645 CTCCG/820 osa-miR159f CTTGGATTGAAGGGAGC 0.86 2646 TCTA/821osa-miR159m TTTGGATTGAAGGGAGC 0.86 2647 TCTG/822 pgl-miR159TTTGGATTGAAGGGAGC 0.86 2648 TCTG/823 psi-miR159 CTTGGATTGAAGGGAGC 0.92649 TCCA/824 pta-miR159a TTGGATTGAAGGGAGCT 0.9 2650 CCA/825 pta-miR159bTTGGATTGAAGAGAGCT 0.86 2651 CCC/826 pta-miR159c CTTGGATTGAAGGGAGC 0.92652 TCCC/827 ptc-miR159a TTTGGATTGAAGGGAGC 0.86 2653 TCTA/828ptc-miR159b TTTGGATTGAAGGGAGC 0.86 2654 TCTA/829 ptc-miR159cTTTGGATTGAAGGGAGC 0.86 2655 TCTA/830 ptc-miR159d CTTGGATTGAAGGGAGC 0.952656 TCCT/831 ptc-miR159e CTTGGGGTGAAGGGAG 0.86 2657 CTCCT/832ptc-miR159f ATTGGAGTGAAGGGAG 0.86 2658 CTCGA/833 pvu-miR159TTTGGATTGAAGGGAGC 0.86 2659 TCTA/834 pvu-miR159.2 CTTCCATATCTGGGGAG 0.622660 CTTC/835 pvu-miR159a.1 TTTGGATTGAAGGGAGC 0.86 2661 TCTA/836pvu-miR159a.2 CTTCCATATCTGGGGAG 0.62 2662 CTTC/837 rco-miR159TTTGGATTGAAGGGAGC 0.86 2663 TCTA/838 rin-miR159 TTGGACTGAAGGGAGCT 0.862664 CCCT/839 sar-miR159 TTTGGATTGAAGGGAGC 0.86 2665 TCTG/840sbi-miR159a TTTGGATTGAAGGGAGC 0.86 2666 TCTG/841 sbi-miR159bCTTGGATTGAAGGGAGC 0.95 2667 TCCT/842 sly-miR159 TTTGGATTGAAGGGAGC 0.862668 TCTA/843 smo-miR159 CTTGGATTGAAGGGAGC 0.9 2669 TCCC/844 sof-miR159aTTTGGATTGAAGGGAGC 0.86 2670 TCTG/845 sof-miR159b TTTGGATTGAAGGGAGC 0.862671 TCTG/846 sof-miR159c CTTGGATTGAAGGGAGC 0.95 2672 TCCT/847sof-miR159d TTTGGATTGAAGGGAGC 0.86 2673 TCTG/848 sof-miR159eTTTGGATTGAAAGGAGC 0.86 2674 TCTT/849 spr-miR159 TTTGGATTGAAGGGAGC 0.862675 TCTG/850 ssp-miR159a TTTGGATTGAAGGGAGC 0.86 2676 TCTG/851svi-miR159 TTGGACTGAAGGGAGCT 0.86 2677 CCCT/852 tae-miR159aTTTGGATTGAAGGGAGC 0.86 2678 TCTG/853 tae-miR159b TTTGGATTGAAGGGAGC 0.862679 TCTG/854 tar-miR159 TTGGACTGAAGGGAGCT 0.86 2680 CCCT/855vvi-miR159a CTTGGAGTGAAGGGAG 0.81 2681 CTCTC/856 vvi-miR159bCTTGGAGTGAAGGGAG 0.81 2682 CTCTC/857 vvi-miR159c TTTGGATTGAAGGGAGC 0.862683 TCTA/858 zma-miR159a TTTGGATTGAAGGGAGC 0.86 2684 TCTG/859zma-miR159b TTTGGATTGAAGGGAGC 0.86 2685 TCTG/860 zma-miR159cCTTGGATTGAAGGGAGC 0.95 2686 TCCT/861 zma-miR159d CTTGGATTGAAGGGAGC 0.952687 TCCT/862 zma-miR159e ATTGGTTTGAAGGGAGC 0.9 2688 TCCA/863zma-miR159f TTTGGATTGAAGGGAGC 0.86 2689 TCTG/864 zma-miR159gTTTGGAGTGAAGGGAGT 0.76 2690 TCTG/865 zma-miR159h TTTGGAGTGAAGGGAG 0.812691 CTCTG/866 zma-miR159i TTTGGAGTGAAGGGAG 0.81 2692 CTCTG/867zma-miR159j TTTGGATTGAAGGGAGC 0.86 2693 TCTG/868 zma-miR159kTTTGGATTGAAGGGAGC 0.86 2694 TCTG/869 zma-miR159m TTTGGATTGAAGGGAGC 0.862695 TCTG/870 osa- acb-miR159 TTGGACTGAAGGGAGCT 0.81 2696 miR159fCCCT/871 aha-miR159 TTGGACTGAAGGGAGCT 0.81 2697 CCCT/872 ahi-miR159TTGGACTGAAGGGAGCT 0.81 2698 CCCT/873 ahy-miR159 TTTGGATTGAAGGGAGC 0.952699 TCTA/874 aly-miR159a TTTGGATTGAAGGGAGC 0.95 2700 TCTA/875aly-miR159b TTTGGATTGAAGGGAGC 0.9 2701 TCTT/876 aly-miR159cTTTGGATTGAAGGGAGC 0.86 2702 TCCT/877 ape-miR159 TTGGACTGAAGGGAGCT 0.812703 CCCT/878 aqc-miR159 TTTGGACTGAAGGGAGC 0.9 2704 TCTA/879 ath-miR159aTTTGGATTGAAGGGAGC 0.95 2705 TCTA/880 ath-miR159b TTTGGATTGAAGGGAGC 0.92706 TCTT/881 ath-miR159c TTTGGATTGAAGGGAGC 0.86 2707 TCCT/882bdi-miR159 CTTGGATTGAAGGGAGC 0.95 2708 TCT/883 bna-miR159TTTGGATTGAAGGGAGC 0.95 2709 TCTA/884 bra-miR159a TTTGGATTGAAGGGAGC 0.952710 TCTA/885 bvl-miR159 TTGGACTGAAGGGAGCT 0.81 2711 CCCT/886 cmi-miR159TTGGACTGAAGGGAGCT 0.81 2712 CCCT/887 cor-miR159 TTGGACTGAAGGGAGCT 0.812713 CCCT/888 crb-miR159 TTGGACTGAAGGGAGCT 0.81 2714 CCCT/889 csi-miR159TTTGGATTGAAGGGAGC 0.95 2715 TCTA/890 dso-miR159 TTGGACTGAAGGGAGCT 0.812716 CCCT/891 ech-miR159 TTGGACTGAAGGGAGCT 0.81 2717 CCCT/892 fal-miR159TTGGACTGAAGGGAGCT 0.81 2718 CCCT/893 far-miR159 TTTGGATTGAAGGGAGC 0.92719 TCTG/894 gma-miR159a-3p TTTGGATTGAAGGGAGC 0.95 2720 TCTA/895gma-miR159b ATTGGAGTGAAGGGAG 0.86 2721 CTCCA/896 gma-miR159cATTGGAGTGAAGGGAG 0.81 2722 CTCCG/897 hvu-miR159a TTTGGATTGAAGGGAGC 0.92723 TCTG/898 hvu-miR159b TTTGGATTGAAGGGAGC 0.9 2724 TCTG/899hvv-miR159a TTTGGATTGAAGGGAGC 0.9 2725 TCTG/900 hvv-miR159bTTTGGATTGAAGGGAGC 0.9 2726 TCTG/901 ltu-miR159 TTTGGATTGAAGGGAGC 0.952727 TCTA/902 mma-miR159 TTGGACTGAAGGGAGCT 0.81 2728 CCCT/903mtr-miR159a TTTGGATTGAAGGGAGC 0.95 2729 TCTA/904 mtr-miR159bATTGAATTGAAGGGAG 0.71 2730 CAACT/905 mtr-miR159c TTTGGATTGAAGGGAGC 0.952731 TCTA/906 nof-miR159 TTGGACTGAAGGGAGCT 0.81 2732 CCCT/907 oru-miR159TTTGGATTGAAGGGAGC 0.9 2733 TCTG/908 osa-miR159a TTTGGATTGAAGGGAGC 0.92734 TCTG/909 osa-miR159a.1 TTTGGATTGAAGGGAGC 0.9 2735 TCTG/910osa-miR159b TTTGGATTGAAGGGAGC 0.9 2736 TCTG/911 osa-miR159cATTGGATTGAAGGGAG 0.9 2737 CTCCA/912 osa-miR159d ATTGGATTGAAGGGAG 0.862738 CTCCG/913 osa-miR159e ATTGGATTGAAGGGAG 0.86 2739 CTCCT/914osa-miR159m TTTGGATTGAAGGGAGC 0.9 2740 TCTG/915 pgl-miR159TTTGGATTGAAGGGAGC 0.9 2741 TCTG/916 psi-miR159 CTTGGATTGAAGGGAGC 0.952742 TCCA/917 pta-miR159a TTGGATTGAAGGGAGCT 0.9 2743 CCA/918 pta-miR159bTTGGATTGAAGAGAGCT 0.81 2744 CCC/919 pta-miR159c CTTGGATTGAAGGGAGC 0.92745 TCCC/920 ptc-miR159a TTTGGATTGAAGGGAGC 0.95 2746 TCTA/921ptc-miR159b TTTGGATTGAAGGGAGC 0.95 2747 TCTA/922 ptc-miR159cTTTGGATTGAAGGGAGC 0.95 2748 TCTA/923 ptc-miR159d CTTGGATTGAAGGGAGC 0.92749 TCCT/924 ptc-miR159e CTTGGGGTGAAGGGAG 0.81 2750 CTCCT/925ptc-miR159f ATTGGAGTGAAGGGAG 0.86 2751 CTCGA/926 pvu-miR159TTTGGATTGAAGGGAGC 0.95 2752 TCTA/927 pvu-miR159.2 CTTCCATATCTGGGGAG 0.622753 CTTC/928 pvu-miR159a.1 TTTGGATTGAAGGGAGC 0.95 2754 TCTA/929pvu-miR159a.2 CTTCCATATCTGGGGAG 0.62 2755 CTTC/930 rco-miR159TTTGGATTGAAGGGAGC 0.95 2756 TCTA/931 rin-miR159 TTGGACTGAAGGGAGCT 0.812757 CCCT/932 sar-miR159 TTTGGATTGAAGGGAGC 0.9 2758 TCTG/933 sbi-miR159aTTTGGATTGAAGGGAGC 0.9 2759 TCTG/934 sbi-miR159b CTTGGATTGAAGGGAGC 0.92760 TCCT/935 sly-miR159 TTTGGATTGAAGGGAGC 0.95 2761 TCTA/936 smo-miR159CTTGGATTGAAGGGAGC 0.9 2762 TCCC/937 sof-miR159a TTTGGATTGAAGGGAGC 0.92763 TCTG/938 sof-miR159b TTTGGATTGAAGGGAGC 0.9 2764 TCTG/939sof-miR159c CTTGGATTGAAGGGAGC 0.9 2765 TCCT/940 sof-miR159dTTTGGATTGAAGGGAGC 0.9 2766 TCTG/941 sof-miR159e TTTGGATTGAAAGGAGC 0.862767 TCTT/942 spr-miR159 TTTGGATTGAAGGGAGC 0.9 2768 TCTG/943 ssp-miR159aTTTGGATTGAAGGGAGC 0.9 2769 TCTG/944 svi-miR159 TTGGACTGAAGGGAGCT 0.812770 CCCT/945 tae-miR159a TTTGGATTGAAGGGAGC 0.9 2771 TCTG/946tae-miR159b TTTGGATTGAAGGGAGC 0.9 2772 TCTG/947 tar-miR159TTGGACTGAAGGGAGCT 0.81 2773 CCCT/948 vvi-miR159a CTTGGAGTGAAGGGAG 0.92774 CTCTC/949 vvi-miR159b CTTGGAGTGAAGGGAG 0.9 2775 CTCTC/950vvi-miR159c TTTGGATTGAAGGGAGC 0.95 2776 TCTA/951 zma-miR159aTTTGGATTGAAGGGAGC 0.9 2777 TCTG/952 zma-miR159b TTTGGATTGAAGGGAGC 0.92778 TCTG/953 zma-miR159c CTTGGATTGAAGGGAGC 0.9 2779 TCCT/954zma-miR159d CTTGGATTGAAGGGAGC 0.9 2780 TCCT/955 zma-miR159eATTGGTTTGAAGGGAGC 0.86 2781 TCCA/956 zma-miR159f TTTGGATTGAAGGGAGC 0.92782 TCTG/957 zma-miR159g TTTGGAGTGAAGGGAGT 0.81 2783 TCTG/958zma-miR159h TTTGGAGTGAAGGGAG 0.86 2784 CTCTG/959 zma-miR159iTTTGGAGTGAAGGGAG 0.86 2785 CTCTG/960 zma-miR159j TTTGGATTGAAGGGAGC 0.92786 TCTG/961 zma-miR159k TTTGGATTGAAGGGAGC 0.9 2787 TCTG/962zma-miR159m TTTGGATTGAAGGGAGC 0.9 2788 TCTG/963 osa- osa-miR1858bGAGAGGAGGACGGAGT 1 2789 miR1858a GGGGC/964 psi-miR159 acb-miR159TTGGACTGAAGGGAGCT 0.86 2790 CCCT/965 aha-miR159 TTGGACTGAAGGGAGCT 0.862791 CCCT/966 ahi-miR159 TTGGACTGAAGGGAGCT 0.86 2792 CCCT/967 ahy-miR159TTTGGATTGAAGGGAGC 0.9 2793 TCTA/968 aly-miR159a TTTGGATTGAAGGGAGC 0.92794 TCTA/969 aly-miR159b TTTGGATTGAAGGGAGC 0.86 2795 TCTT/970aly-miR159c TTTGGATTGAAGGGAGC 0.9 2796 TCCT/971 ape-miR159TTGGACTGAAGGGAGCT 0.86 2797 CCCT/972 aqc-miR159 TTTGGACTGAAGGGAGC 0.862798 TCTA/973 ath-miR159a TTTGGATTGAAGGGAGC 0.9 2799 TCTA/974ath-miR159b TTTGGATTGAAGGGAGC 0.86 2800 TCTT/975 ath-miR159cTTTGGATTGAAGGGAGC 0.9 2801 TCCT/976 bdi-miR159 CTTGGATTGAAGGGAGC 0.92802 TCT/977 bna-miR159 TTTGGATTGAAGGGAGC 0.9 2803 TCTA/978 bra-miR159aTTTGGATTGAAGGGAGC 0.9 2804 TCTA/979 bvl-miR159 TTGGACTGAAGGGAGCT 0.862805 CCCT/980 cmi-miR159 TTGGACTGAAGGGAGCT 0.86 2806 CCCT/981 cor-miR159TTGGACTGAAGGGAGCT 0.86 2807 CCCT/982 crb-miR159 TTGGACTGAAGGGAGCT 0.862808 CCCT/983 csi-miR159 TTTGGATTGAAGGGAGC 0.9 2809 TCTA/984 dso-miR159TTGGACTGAAGGGAGCT 0.86 2810 CCCT/985 ech-miR159 TTGGACTGAAGGGAGCT 0.862811 CCCT/986 fal-miR159 TTGGACTGAAGGGAGCT 0.86 2812 CCCT/987 far-miR159TTTGGATTGAAGGGAGC 0.86 2813 TCTG/988 gma-miR159a-3p TTTGGATTGAAGGGAGC0.9 2814 TCTA/989 gma-miR159b ATTGGAGTGAAGGGAG 0.9 2815 CTCCA/990gma-miR159c ATTGGAGTGAAGGGAG 0.86 2816 CTCCG/991 hvu-miR159aTTTGGATTGAAGGGAGC 0.86 2817 TCTG/992 hvu-miR159b TTTGGATTGAAGGGAGC 0.862818 TCTG/993 hvv-miR159a TTTGGATTGAAGGGAGC 0.86 2819 TCTG/994hvv-miR159b TTTGGATTGAAGGGAGC 0.86 2820 TCTG/995 ltu-miR159TTTGGATTGAAGGGAGC 0.9 2821 TCTA/996 mma-miR159 TTGGACTGAAGGGAGCT 0.862822 CCCT/997 mtr-miR159a TTTGGATTGAAGGGAGC 0.9 2823 TCTA/998mtr-miR159b ATTGAATTGAAGGGAG 0.76 2824 CAACT/999 mtr-miR159cTTTGGATTGAAGGGAGC 0.9 2825 TCTA/1000 nof-miR159 TTGGACTGAAGGGAGCT 0.862826 CCCT/1001 oru-miR159 TTTGGATTGAAGGGAGC 0.86 2827 TCTG/1002osa-miR159a TTTGGATTGAAGGGAGC 0.86 2828 TCTG/1003 osa-miR159a.1TTTGGATTGAAGGGAGC 0.86 2829 TCTG/1004 osa-miR159a.2 TTGCATGCCCCAGGAGC0.62 2830 TGCA/1005 osa-miR159b TTTGGATTGAAGGGAGC 0.86 2831 TCTG/1006osa-miR159c ATTGGATTGAAGGGAG 0.95 2832 CTCCA/1007 osa-miR159dATTGGATTGAAGGGAG 0.9 2833 CTCCG/1008 osa-miR159e ATTGGATTGAAGGGAG 0.92834 CTCCT/1009 osa-miR159f CTTGGATTGAAGGGAGC 0.95 2835 TCTA/1010osa-miR159m TTTGGATTGAAGGGAGC 0.86 2836 TCTG/1011 pgl-miR159TTTGGATTGAAGGGAGC 0.86 2837 TCTG/1012 pta-miR159a TTGGATTGAAGGGAGCT 0.952838 CCA/1013 pta-miR159b TTGGATTGAAGAGAGCT 0.86 2839 CCC/1014pta-miR159c CTTGGATTGAAGGGAGC 0.95 2840 TCCC/1015 ptc-miR159aTTTGGATTGAAGGGAGC 0.9 2841 TCTA/1016 ptc-miR159b TTTGGATTGAAGGGAGC 0.92842 TCTA/1017 ptc-miR159c TTTGGATTGAAGGGAGC 0.9 2843 TCTA/1018ptc-miR159d CTTGGATTGAAGGGAGC 0.95 2844 TCCT/1019 ptc-miR159eCTTGGGGTGAAGGGAG 0.86 2845 CTCCT/1020 ptc-miR159f ATTGGAGTGAAGGGAG 0.862846 CTCGA/1021 pvu-miR159 TTTGGATTGAAGGGAGC 0.9 2847 TCTA/1022pvu-miR159.2 CTTCCATATCTGGGGAG 0.67 2848 CTTC/1023 pvu-miR159a.1TTTGGATTGAAGGGAGC 0.9 2849 TCTA/1024 pvu-miR159a.2 CTTCCATATCTGGGGAG0.67 2850 CTTC/1025 rco-miR159 TTTGGATTGAAGGGAGC 0.9 2851 TCTA/1026rin-miR159 TTGGACTGAAGGGAGCT 0.86 2852 CCCT/1027 sar-miR159TTTGGATTGAAGGGAGC 0.86 2853 TCTG/1028 sbi-miR159a TTTGGATTGAAGGGAGC 0.862854 TCTG/1029 sbi-miR159b CTTGGATTGAAGGGAGC 0.95 2855 TCCT/1030sly-miR159 TTTGGATTGAAGGGAGC 0.9 2856 TCTA/1031 smo-miR159CTTGGATTGAAGGGAGC 0.95 2857 TCCC/1032 sof-miR159a TTTGGATTGAAGGGAGC 0.862858 TCTG/1033 sof-miR159b TTTGGATTGAAGGGAGC 0.86 2859 TCTG/1034sof-miR159c CTTGGATTGAAGGGAGC 0.95 2860 TCCT/1035 sof-miR159dTTTGGATTGAAGGGAGC 0.86 2861 TCTG/1036 sof-miR159e TTTGGATTGAAAGGAGC 0.812862 TCTT/1037 spr-miR159 TTTGGATTGAAGGGAGC 0.86 2863 TCTG/1038ssp-miR159a TTTGGATTGAAGGGAGC 0.86 2864 TCTG/1039 svi-miR159TTGGACTGAAGGGAGCT 0.86 2865 CCCT/1040 tae-miR159a TTTGGATTGAAGGGAGC 0.862866 TCTG/1041 tae-miR159b TTTGGATTGAAGGGAGC 0.86 2867 TCTG/1042tar-miR159 TTGGACTGAAGGGAGCT 0.86 2868 CCCT/1043 vvi-miR159aCTTGGAGTGAAGGGAG 0.86 2869 CTCTC/1044 vvi-miR159b CTTGGAGTGAAGGGAG 0.862870 CTCTC/1045 vvi-miR159c TTTGGATTGAAGGGAGC 0.9 2871 TCTA/1046zma-miR159a TTTGGATTGAAGGGAGC 0.86 2872 TCTG/1047 zma-miR159bTTTGGATTGAAGGGAGC 0.86 2873 TCTG/1048 zma-miR159c CTTGGATTGAAGGGAGC 0.952874 TCCT/1049 zma-miR159d CTTGGATTGAAGGGAGC 0.95 2875 TCCT/1050zma-miR159e ATTGGTTTGAAGGGAGC 0.9 2876 TCCA/1051 zma-miR159fTTTGGATTGAAGGGAGC 0.86 2877 TCTG/1052 zma-miR159g TTTGGAGTGAAGGGAGT 0.762878 TCTG/1053 zma-miR159h TTTGGAGTGAAGGGAG 0.81 2879 CTCTG/1054zma-miR159i TTTGGAGTGAAGGGAG 0.81 2880 CTCTG/1055 zma-miR159jTTTGGATTGAAGGGAGC 0.86 2881 TCTG/1056 zma-miR159k TTTGGATTGAAGGGAGC 0.862882 TCTG/1057 zma-miR159m TTTGGATTGAAGGGAGC 0.86 2883 TCTG/1058 pta-ahy-miR156a TGACAGAAGAGAGAGA 0.8 2884 miR156a GCAC/1059 ahy-miR156b-5pTTGACAGAAGATAGAG 0.85 2885 AGCAC/1060 ahy-miR156c TTGACAGAAGAGAGAG 0.82886 AGCAC/1061 aly-miR156a TGACAGAAGAGAGTGA 0.75 2887 GCAC/1062aly-miR156b TGACAGAAGAGAGTGA 0.75 2888 GCAC/1063 aly-miR156cTGACAGAAGAGAGTGA 0.75 2889 GCAC/1064 aly-miR156d TGACAGAAGAGAGTGA 0.752890 GCAC/1065 aly-miR156e TGACAGAAGAGAGTGA 0.75 2891 GCAC/1066aly-miR156f TGACAGAAGAGAGTGA 0.75 2892 GCAC/1067 aly-miR156gCGACAGAAGAGAGTGA 0.75 2893 GCAC/1068 aly-miR156h TGACAGAAGAAAGAGA 0.82894 GCAC/1069 aqc-miR156a TGACAGAAGATAGAGA 0.85 2895 GCAC/1070aqc-miR156b TGACAGAAGATAGAGA 0.85 2896 GCAC/1071 ath-miR156aTGACAGAAGAGAGTGA 0.75 2897 GCAC/1072 ath-miR156b TGACAGAAGAGAGTGA 0.752898 GCAC/1073 ath-miR156c TGACAGAAGAGAGTGA 0.75 2899 GCAC/1074ath-miR156d TGACAGAAGAGAGTGA 0.75 2900 GCAC/1075 ath-miR156eTGACAGAAGAGAGTGA 0.75 2901 GCAC/1076 ath-miR156f TGACAGAAGAGAGTGA 0.752902 GCAC/1077 ath-miR156g CGACAGAAGAGAGTGA 0.75 2903 GCAC/1078ath-miR156h TGACAGAAGAAAGAGA 0.8 2904 GCAC/1079 ath-miR156mTGACAGAAGAGAGAGA 0.8 2905 GCAC/1080 ath-miR156o TGACAGAAGAGAGAGA 0.82906 GCAC/1081 ath-miR156p TGACAGAAGAGAGAGA 0.8 2907 GCAC/1082ath-miR156q TGACAGAAGAGAGAGA 0.8 2908 GCAC/1083 ath-miR156rTGACAGAAGAGAGAGA 0.8 2909 GCAC/1084 ath-miR156s TGACAGAAGAGAGAGA 0.82910 GCAC/1085 bdi-miR156 TGACAGAAGAGAGAGA 0.85 2911 GCACA/1086bdi-miR156b TGACAGAAGAGAGTGA 0.75 2912 GCAC/1087 bdi-miR156cTGACAGAAGAGAGTGA 0.75 2913 GCAC/1088 bdi-miR156d TGACAGAAGAGAGTGA 0.752914 GCAC/1089 bna-miR156a TGACAGAAGAGAGTGA 0.8 2915 GCACA/1090bna-miR156b TTGACAGAAGATAGAG 0.85 2916 AGCAC/1091 bna-miR156cTTGACAGAAGATAGAG 0.85 2917 AGCAC/1092 can-miR156a TGACAGAAGAGAGAGA 0.82918 GCAC/1093 can-miR156b TGACAGAAGAGAGGGA 0.75 2919 GCAC/1094cpt-miR156a TGACAGAAGAGAGTGA 0.75 2920 GCAC/1095 cpt-miR156bTGACAGAAGAGAGAGA 0.8 2921 GCAC/1096 cru-miR156 TGACAGAAGAGAGAGA 0.8 2922GCAC/1097 csi-miR156 TGACAGAAGAGAGTGA 0.75 2923 GCAC/1098 csi-miR156aTGACAGAAGAGAGAGA 0.8 2924 GCAC/1099 csi-miR156b TGACAGAAGAGAGAGA 0.82925 GCAC/1100 ctr-miR156 TGACAGAAGAGAGTGA 0.75 2926 GCAC/1101eca-miR156 TGACAGAAGAGAGAGA 0.8 2927 GCAC/1102 far-miR156aTGACAGAAGAGAGAGA 0.85 2928 GCACA/1103 far-miR156b TTGACAGAAGAGAGAG 0.82929 AGCAC/1104 ghr-miR156a TGACAGAAGAGAGTGA 0.75 2930 GCAC/1105ghr-miR156b TGACAGAAGAGAGTGA 0.75 2931 GCAC/1106 ghr-miR156cTGTCAGAAGAGAGTGA 0.75 2932 GCAC/1107 ghr-miR156d TGACAGAAGAGAGTGA 0.752933 GCAC/1108 gma-miR156a TGACAGAAGAGAGTGA 0.75 2934 GCAC/1109gma-miR156b TGACAGAAGAGAGAGA 0.85 2935 GCACA/1110 gma-miR156cTTGACAGAAGATAGAG 0.85 2936 AGCAC/1111 gma-miR156d TTGACAGAAGATAGAG 0.852937 AGCAC/1112 gma-miR156e TTGACAGAAGATAGAG 0.85 2938 AGCAC/1113gma-miR156f TTGACAGAAGAGAGAG 0.85 2939 AGCACA/1114 gma-miR156gACAGAAGATAGAGAGC 0.9 2940 ACAG/1115 gma-miR156h TGACAGAAGAGAGAGA 0.82941 GCAC/1116 gma-miR156i TGACAGAAGAGAGAGA 0.8 2942 GCAC/1117han-miR156 TGACAGAAGAGAGAGA 0.8 2943 GCAC/1118 hvs-miR156TGACAGAAGAGAGAGA 0.8 2944 GCAC/1119 hvu-miR156 TGACAGAAGAGAGTGA 0.8 2945GCACA/1120 hvv-miR156a TGACAGAAGAGAGTGA 0.75 2946 GCAC/1121 hvv-miR156bTGACAGAAGAGAGAGA 0.8 2947 GCAC/1122 hvv-miR156c TGACAGAAGAGAGAGA 0.82948 GCAC/1123 hvv-miR156d TGACAGAAGAGAGAGA 0.8 2949 GCAC/1124lja-miR156 TGACAGAAGAGAGAGA 0.8 2950 GCAC/1125 lsa-miR156TGACAGAAGAGAGAGA 0.8 2951 GCAC/1126 mdo-miR156a TGACAGAAGAGAGAGA 0.82952 GCAC/1127 mdo-miR156b TGACAGAAGAGAGAGA 0.8 2953 GCAC/1128mtr-miR156 TGACAGAAGAGAGAGA 0.85 2954 GCACA/1129 mtr-miR156bTGACAGAAGAGAGTGA 0.75 2955 GCAC/1130 mtr-miR156c TGACAGAAGAGAGTGA 0.752956 GCAC/1131 mtr-miR156d TGACAGAAGAGAGTGA 0.75 2957 GCAC/1132mtr-miR156e TTGACAGAAGATAGAG 0.85 2958 AGCAC/1133 mtr-miR156fTTGACAGAAGATAGAG 0.85 2959 AGCAC/1134 mtr-miR156g TTGACAGAAGATAGAG 0.82960 GGCAC/1135 mtr-miR156h TTGACAGAAGATAGAG 0.85 2961 AGCAC/1136mtr-miR156i TGACAGAAGAGAGTGA 0.75 2962 GCAC/1137 nbe-miR156aTGACAGAAGAGAGAGA 0.8 2963 GCAC/1138 nbe-miR156b TGACAGAAGAGAGAGA 0.82964 GCAC/1139 oru-miR156 TGACAGAAGAGAGTGA 0.75 2965 GCAC/1140osa-miR156a TGACAGAAGAGAGTGA 0.75 2966 GCAC/1141 osa-miR156bTGACAGAAGAGAGTGA 0.75 2967 GCAC/1142 osa-miR156c TGACAGAAGAGAGTGA 0.752968 GCAC/1143 osa-miR156d TGACAGAAGAGAGTGA 0.75 2969 GCAC/1144osa-miR156e TGACAGAAGAGAGTGA 0.75 2970 GCAC/1145 osa-miR156fTGACAGAAGAGAGTGA 0.75 2971 GCAC/1146 osa-miR156g TGACAGAAGAGAGTGA 0.752972 GCAC/1147 osa-miR156h TGACAGAAGAGAGTGA 0.75 2973 GCAC/1148osa-miR156i TGACAGAAGAGAGTGA 0.75 2974 GCAC/1149 osa-miR156jTGACAGAAGAGAGTGA 0.75 2975 GCAC/1150 osa-miR156k TGACAGAAGAGAGAGA 0.852976 GCACA/1151 osa-miR156l CGACAGAAGAGAGTGA 0.75 2977 GCATA/1152osa-miR156m TGACAGAAGAGAGTGA 0.75 2978 GCAC/1153 osa-miR156nTGACAGAAGAGAGTGA 0.75 2979 GCAC/1154 osa-miR156o TGACAGAAGAGAGTGA 0.72980 GCAT/1155 osa-miR156p TGACAGAAGAGAGTGA 0.7 2981 GCTC/1156osa-miR156q TGACAGAACAGAGTGA 0.7 2982 GCAC/1157 osa-miR156rTGACAGAAGAGAGAGA 0.8 2983 GCAC/1158 par-miR156 TGACAGAAGAGAGAGA 0.8 2984GCAC/1159 ppd-miR156 TGACAGAAGAGAGAGA 0.8 2985 GCAC/1160 ppr-miR156TGACAGAAGAGAGTGA 0.75 2986 GCAC/1161 ppt-miR156a TGACAGAAGAGAGTGA 0.752987 GCAC/1162 ppt-miR156b TGACAGAAGAGAGTGA 0.75 2988 GCAC/1163ppt-miR156c TGACAGAAGAGAGTGA 0.75 2989 GCAC/1164 pta-miR156bCAGAAGATAGAGAGCA 0.95 2990 CAAC/1165 ptc-miR156a TGACAGAAGAGAGTGA 0.752991 GCAC/1166 ptc-miR156b TGACAGAAGAGAGTGA 0.75 2992 GCAC/1167ptc-miR156c TGACAGAAGAGAGTGA 0.75 2993 GCAC/1168 ptc-miR156dTGACAGAAGAGAGTGA 0.75 2994 GCAC/1169 ptc-miR156e TGACAGAAGAGAGTGA 0.752995 GCAC/1170 ptc-miR156f TGACAGAAGAGAGTGA 0.75 2996 GCAC/1171ptc-miR156g TTGACAGAAGATAGAG 0.85 2997 AGCAC/1172 ptc-miR156hTTGACAGAAGATAGAG 0.85 2998 AGCAC/1173 ptc-miR156i TTGACAGAAGATAGAG 0.852999 AGCAC/1174 ptc-miR156j TTGACAGAAGATAGAG 0.85 3000 AGCAC/1175ptc-miR156k TGACAGAAGAGAGGGA 0.75 3001 GCAC/1176 ptr-miR156TGACAGAAGAGAGAGA 0.8 3002 GCAC/1177 pts-miR156a TGACAGAAGAGAGTGA 0.73003 GCGC/1178 pts-miR156b TGACAGAAGAGAGAGA 0.8 3004 GCAC/1179pts-miR156c TGACAGAAGAGAGAGA 0.8 3005 GCAC/1180 rco-miR156aTGACAGAAGAGAGTGA 0.8 3006 GCACA/1181 rco-miR156b TGACAGAAGAGAGTGA 0.83007 GCACA/1182 rco-miR156c TGACAGAAGAGAGTGA 0.8 3008 GCACA/1183rco-miR156d TGACAGAAGAGAGTGA 0.8 3009 GCACA/1184 rco-miR156eTGACAGAAGAGAGAGA 0.85 3010 GCACA/1185 rco-miR156f TTGACAGAAGATAGAG 0.853011 AGCAC/1186 rco-miR156g TTGACAGAAGATAGAG 0.85 3012 AGCAC/1187rco-miR156h TTGACAGAAGATAGAG 0.85 3013 AGCAC/1188 sbi-miR156aTGACAGAAGAGAGTGA 0.75 3014 GCAC/1189 sbi-miR156b TGACAGAAGAGAGTGA 0.753015 GCAC/1190 sbi-miR156c TGACAGAAGAGAGTGA 0.75 3016 GCAC/1191sbi-miR156d TGACAGAAGAGAGAGA 0.85 3017 GCACA/1192 sbi-miR156eTGACAGAAGAGAGCGA 0.75 3018 GCAC/1193 sbi-miR156f TGACAGAAGAGAGTGA 0.753019 GCAC/1194 sbi-miR156g TGACAGAAGAGAGTGA 0.75 3020 GCAC/1195sbi-miR156h TGACAGAAGAGAGTGA 0.75 3021 GCAC/1196 sbi-miR156iTGACAGAAGAGAGTGA 0.75 3022 GCAC/1197 sin-miR156 TGACAGAAGAGAGAGA 0.83023 GCAC/1198 sly-miR156a TTGACAGAAGATAGAG 0.85 3024 AGCAC/1199sly-miR156b TTGACAGAAGATAGAG 0.85 3025 AGCAC/1200 sly-miR156cTTGACAGAAGATAGAG 0.85 3026 AGCAC/1201 smo-miR156a CGACAGAAGAGAGTGA 0.753027 GCAC/1202 smo-miR156b CTGACAGAAGATAGAG 0.85 3028 AGCAC/1203smo-miR156c TTGACAGAAGAAAGAG 0.8 3029 AGCAC/1204 smo-miR156dTTGACAGAAGACAGGG 0.75 3030 AGCAC/1205 sof-miR156 TGACAGAAGAGAGTGA 0.753031 GCAC/1206 sof-miR156c TGACAGAAGAGAGAGA 0.8 3032 GCAC/1207sof-miR156d TGACAGAAGAGAGAGA 0.8 3033 GCAC/1208 sof-miR156eTGACAGAAGAGAGAGA 0.8 3034 GCAC/1209 sof-miR156f TGACAGAAGAGAGAGA 0.83035 GCAC/1210 sof-miR156g TGACAGAAGAGAGAGA 0.8 3036 GCAC/1211sof-miR156h TGACAGAAGAGAGAGA 0.8 3037 GCAC/1212 sof-miR156uTGACAGAAGAGAGAGA 0.8 3038 GCAC/1213 spr-miR156 TGACAGAAGAGAGAGA 0.8 3039GCAC/1214 ssp-miR156 TGACAGAAGAGAGTGA 0.8 3040 GCACA/1215 stu-miR156aTGACAGAAGAGAGTGA 0.75 3041 GCAC/1216 stu-miR156b TGACAGAAGAGAGAGA 0.83042 GCAC/1217 stu-miR156c TGACAGAAGAGAGAGA 0.8 3043 GCAC/1218stu-miR156d TGACAGAAGAGAGAGA 0.8 3044 GCAC/1219 stu-miR156eTGACAGAAGAGAGAGA 0.8 3045 GCAC/1220 tae-miR156 TGACAGAAGAGAGTGA 0.8 3046GCACA/1221 tae-miR156a TGACAGAAGAGAGAGA 0.8 3047 GCAC/1222 tae-miR156bTGACAGAAGAGAGAGA 0.8 3048 GCAC/1223 tcc-miR156a TGACAGAAGAGAGAGA 0.853049 GCACA/1224 tcc-miR156b TGACAGAAGAGAGTGA 0.75 3050 GCAC/1225tcc-miR156c TGACAGAAGAGAGTGA 0.75 3051 GCAC/1226 tcc-miR156dTGACAGAAGAGAGTGA 0.75 3052 GCAC/1227 tcc-miR156e TTGACAGAAGATAGAG 0.853053 AGCAC/1228 tcc-miR156f TTGACAGAAGATAGAG 0.85 3054 AGCAC/1229tcc-miR156g TGACAGAAGAGAGTGA 0.75 3055 GCAC/1230 tre-miR156TGACAGAAGAGAGTGA 0.75 3056 GCAC/1231 vvi-miR156a TGACAGAAGAGAGGGA 0.753057 GCAC/1232 vvi-miR156b TGACAGAAGAGAGTGA 0.75 3058 GCAC/1233vvi-miR156c TGACAGAAGAGAGTGA 0.75 3059 GCAC/1234 vvi-miR156dTGACAGAAGAGAGTGA 0.75 3060 GCAC/1235 vvi-miR156e TGACAGAGGAGAGTGA 0.73061 GCAC/1236 vvi-miR156f TTGACAGAAGATAGAG 0.85 3062 AGCAC/1237vvi-miR156g TTGACAGAAGATAGAG 0.85 3063 AGCAC/1238 vvi-miR156hTGACAGAAGAGAGAGA 0.75 3064 GCAT/1239 vvi-miR156i TTGACAGAAGATAGAG 0.853065 AGCAC/1240 zel-miR156 TGACAGAAGAGAGAGA 0.8 3066 GCAC/1241zma-miR156a TGACAGAAGAGAGTGA 0.75 3067 GCAC/1242 zma-miR156bTGACAGAAGAGAGTGA 0.75 3068 GCAC/1243 zma-miR156c TGACAGAAGAGAGTGA 0.753069 GCAC/1244 zma-miR156d TGACAGAAGAGAGTGA 0.75 3070 GCAC/1245zma-miR156e TGACAGAAGAGAGTGA 0.75 3071 GCAC/1246 zma-miR156fTGACAGAAGAGAGTGA 0.75 3072 GCAC/1247 zma-miR156g TGACAGAAGAGAGTGA 0.753073 GCAC/1248 zma-miR156h TGACAGAAGAGAGTGA 0.75 3074 GCAC/1249zma-miR156i TGACAGAAGAGAGTGA 0.75 3075 GCAC/1250 zma-miR156jTGACAGAAGAGAGAGA 0.85 3076 GCACA/1251 zma-miR156k TGACAGAAGAGAGCGA 0.753077 GCAC/1252 zma-miR1561 TGACAGAAGAGAGTGA 0.75 3078 GCAC/1253zma-miR156m TGACAGAAGAGAGTGA 0.75 3079 GCAC/1254 zma-miR156nTGACAGAAGAGAGTGA 0.75 3080 GCAC/1255 zma-miR156o TGACAGAAGAGAGTGA 0.753081 GCAC/1256 zma-miR156p TGACAGAAGAGAGAGA 0.8 3082 GCAC/1257zma-miR156q TGACAGAAGAGAGAGA 0.8 3083 GCAC/1258 zma-miR156rTGACAGAAGAGAGTGG 0.7 3084 GCAC/1259 pta- ahy-miR156a TGACAGAAGAGAGAGA0.8 3085 miR156b GCAC/1260 ahy-miR156b-5p TTGACAGAAGATAGAG 0.85 3086AGCAC/1261 ahy-miR156c TTGACAGAAGAGAGAG 0.8 3087 AGCAC/1262 aly-miR156aTGACAGAAGAGAGTGA 0.75 3088 GCAC/1263 aly-miR156b TGACAGAAGAGAGTGA 0.753089 GCAC/1264 aly-miR156c TGACAGAAGAGAGTGA 0.75 3090 GCAC/1265aly-miR156d TGACAGAAGAGAGTGA 0.75 3091 GCAC/1266 aly-miR156eTGACAGAAGAGAGTGA 0.75 3092 GCAC/1267 aly-miR156f TGACAGAAGAGAGTGA 0.753093 GCAC/1268 aly-miR156g CGACAGAAGAGAGTGA 0.75 3094 GCAC/1269aly-miR156h TGACAGAAGAAAGAGA 0.8 3095 GCAC/1270 aqc-miR156aTGACAGAAGATAGAGA 0.85 3096 GCAC/1271 aqc-miR156b TGACAGAAGATAGAGA 0.853097 GCAC/1272 ath-miR156a TGACAGAAGAGAGTGA 0.75 3098 GCAC/1273ath-miR156b TGACAGAAGAGAGTGA 0.75 3099 GCAC/1274 ath-miR156cTGACAGAAGAGAGTGA 0.75 3100 GCAC/1275 ath-miR156d TGACAGAAGAGAGTGA 0.753101 GCAC/1276 ath-miR156e TGACAGAAGAGAGTGA 0.75 3102 GCAC/1277ath-miR156f TGACAGAAGAGAGTGA 0.75 3103 GCAC/1278 ath-miR156gCGACAGAAGAGAGTGA 0.75 3104 GCAC/1279 ath-miR156h TGACAGAAGAAAGAGA 0.83105 GCAC/1280 ath-miR156m TGACAGAAGAGAGAGA 0.8 3106 GCAC/1281ath-miR156o TGACAGAAGAGAGAGA 0.8 3107 GCAC/1282 ath-miR156pTGACAGAAGAGAGAGA 0.8 3108 GCAC/1283 ath-miR156q TGACAGAAGAGAGAGA 0.83109 GCAC/1284 ath-miR156r TGACAGAAGAGAGAGA 0.8 3110 GCAC/1285ath-miR156s TGACAGAAGAGAGAGA 0.8 3111 GCAC/1286 bdi-miR156TGACAGAAGAGAGAGA 0.85 3112 GCACA/1287 bdi-miR156b TGACAGAAGAGAGTGA 0.753113 GCAC/1288 bdi-miR156c TGACAGAAGAGAGTGA 0.75 3114 GCAC/1289bdi-miR156d TGACAGAAGAGAGTGA 0.75 3115 GCAC/1290 bna-miR156aTGACAGAAGAGAGTGA 0.8 3116 GCACA/1291 bna-miR156b TTGACAGAAGATAGAG 0.853117 AGCAC/1292 bna-miR156c TTGACAGAAGATAGAG 0.85 3118 AGCAC/1293can-miR156a TGACAGAAGAGAGAGA 0.8 3119 GCAC/1294 can-miR156bTGACAGAAGAGAGGGA 0.75 3120 GCAC/1295 cpt-miR156a TGACAGAAGAGAGTGA 0.753121 GCAC/1296 cpt-miR156b TGACAGAAGAGAGAGA 0.8 3122 GCAC/1297cru-miR156 TGACAGAAGAGAGAGA 0.8 3123 GCAC/1298 csi-miR156TGACAGAAGAGAGTGA 0.75 3124 GCAC/1299 csi-miR156a TGACAGAAGAGAGAGA 0.83125 GCAC/1300 csi-miR156b TGACAGAAGAGAGAGA 0.8 3126 GCAC/1301ctr-miR156 TGACAGAAGAGAGTGA 0.75 3127 GCAC/1302 eca-miR156TGACAGAAGAGAGAGA 0.8 3128 GCAC/1303 far-miR156a TGACAGAAGAGAGAGA 0.853129 GCACA/1304 far-miR156b TTGACAGAAGAGAGAG 0.8 3130 AGCAC/1305ghr-miR156a TGACAGAAGAGAGTGA 0.75 3131 GCAC/1306 ghr-miR156bTGACAGAAGAGAGTGA 0.75 3132 GCAC/1307 ghr-miR156c TGTCAGAAGAGAGTGA 0.753133 GCAC/1308 ghr-miR156d TGACAGAAGAGAGTGA 0.75 3134 GCAC/1309gma-miR156a TGACAGAAGAGAGTGA 0.75 3135 GCAC/1310 gma-miR156bTGACAGAAGAGAGAGA 0.85 3136 GCACA/1311 gma-miR156c TTGACAGAAGATAGAG 0.853137 AGCAC/1312 gma-miR156d TTGACAGAAGATAGAG 0.85 3138 AGCAC/1313gma-miR156e TTGACAGAAGATAGAG 0.85 3139 AGCAC/1314 gma-miR156fTTGACAGAAGAGAGAG 0.85 3140 AGCACA/1315 gma-miR156g ACAGAAGATAGAGAGC 0.93141 ACAG/1316 gma-miR156h TGACAGAAGAGAGAGA 0.8 3142 GCAC/1317gma-miR156i TGACAGAAGAGAGAGA 0.8 3143 GCAC/1318 han-miR156TGACAGAAGAGAGAGA 0.8 3144 GCAC/1319 hvs-miR156 TGACAGAAGAGAGAGA 0.8 3145GCAC/1320 hvu-miR156 TGACAGAAGAGAGTGA 0.8 3146 GCACA/1321 hvv-miR156aTGACAGAAGAGAGTGA 0.75 3147 GCAC/1322 hvv-miR156b TGACAGAAGAGAGAGA 0.83148 GCAC/1323 hvv-miR156c TGACAGAAGAGAGAGA 0.8 3149 GCAC/1324hvv-miR156d TGACAGAAGAGAGAGA 0.8 3150 GCAC/1325 lja-miR156TGACAGAAGAGAGAGA 0.8 3151 GCAC/1326 lsa-miR156 TGACAGAAGAGAGAGA 0.8 3152GCAC/1327 mdo-miR156a TGACAGAAGAGAGAGA 0.8 3153 GCAC/1328 mdo-miR156bTGACAGAAGAGAGAGA 0.8 3154 GCAC/1329 mtr-miR156 TGACAGAAGAGAGAGA 0.853155 GCACA/1330 mtr-miR156b TGACAGAAGAGAGTGA 0.75 3156 GCAC/1331mtr-miR156c TGACAGAAGAGAGTGA 0.75 3157 GCAC/1332 mtr-miR156dTGACAGAAGAGAGTGA 0.75 3158 GCAC/1333 mtr-miR156e TTGACAGAAGATAGAG 0.853159 AGCAC/1334 mtr-miR156f TTGACAGAAGATAGAG 0.85 3160 AGCAC/1335mtr-miR156g TTGACAGAAGATAGAG 0.8 3161 GGCAC/1336 mtr-miR156hTTGACAGAAGATAGAG 0.85 3162 AGCAC/1337 mtr-miR156i TGACAGAAGAGAGTGA 0.753163 GCAC/1338 nbe-miR156a TGACAGAAGAGAGAGA 0.8 3164 GCAC/1339nbe-miR156b TGACAGAAGAGAGAGA 0.8 3165 GCAC/1340 oru-miR156TGACAGAAGAGAGTGA 0.75 3166 GCAC/1341 osa-miR156a TGACAGAAGAGAGTGA 0.753167 GCAC/1342 osa-miR156b TGACAGAAGAGAGTGA 0.75 3168 GCAC/1343osa-miR156c TGACAGAAGAGAGTGA 0.75 3169 GCAC/1344 osa-miR156dTGACAGAAGAGAGTGA 0.75 3170 GCAC/1345 osa-miR156e TGACAGAAGAGAGTGA 0.753171 GCAC/1346 osa-miR156f TGACAGAAGAGAGTGA 0.75 3172 GCAC/1347osa-miR156g TGACAGAAGAGAGTGA 0.75 3173 GCAC/1348 osa-miR156hTGACAGAAGAGAGTGA 0.75 3174 GCAC/1349 osa-miR156i TGACAGAAGAGAGTGA 0.753175 GCAC/1350 osa-miR156j TGACAGAAGAGAGTGA 0.75 3176 GCAC/1351osa-miR156k TGACAGAAGAGAGAGA 0.85 3177 GCACA/1352 osa-miR156lCGACAGAAGAGAGTGA 0.75 3178 GCATA/1353 osa-miR156m TGACAGAAGAGAGTGA 0.753179 GCAC/1354 osa-miR156n TGACAGAAGAGAGTGA 0.75 3180 GCAC/1355osa-miR156o TGACAGAAGAGAGTGA 0.7 3181 GCAT/1356 osa-miR156pTGACAGAAGAGAGTGA 0.7 3182 GCTC/1357 osa-miR156q TGACAGAACAGAGTGA 0.73183 GCAC/1358 osa-miR156r TGACAGAAGAGAGAGA 0.8 3184 GCAC/1359par-miR156 TGACAGAAGAGAGAGA 0.8 3185 GCAC/1360 ppd-miR156TGACAGAAGAGAGAGA 0.8 3186 GCAC/1361 ppr-miR156 TGACAGAAGAGAGTGA 0.753187 GCAC/1362 ppt-miR156a TGACAGAAGAGAGTGA 0.75 3188 GCAC/1363ppt-miR156b TGACAGAAGAGAGTGA 0.75 3189 GCAC/1364 ppt-miR156cTGACAGAAGAGAGTGA 0.75 3190 GCAC/1365 pta-miR156a CAGAAGATAGAGAGCA 0.953191 CATC/1366 ptc-miR156a TGACAGAAGAGAGTGA 0.75 3192 GCAC/1367ptc-miR156b TGACAGAAGAGAGTGA 0.75 3193 GCAC/1368 ptc-miR156cTGACAGAAGAGAGTGA 0.75 3194 GCAC/1369 ptc-miR156d TGACAGAAGAGAGTGA 0.753195 GCAC/1370 ptc-miR156e TGACAGAAGAGAGTGA 0.75 3196 GCAC/1371ptc-miR156f TGACAGAAGAGAGTGA 0.75 3197 GCAC/1372 ptc-miR156gTTGACAGAAGATAGAG 0.85 3198 AGCAC/1373 ptc-miR156h TTGACAGAAGATAGAG 0.853199 AGCAC/1374 ptc-miR156i TTGACAGAAGATAGAG 0.85 3200 AGCAC/1375ptc-miR156j TTGACAGAAGATAGAG 0.85 3201 AGCAC/1376 ptc-miR156kTGACAGAAGAGAGGGA 0.75 3202 GCAC/1377 ptr-miR156 TGACAGAAGAGAGAGA 0.83203 GCAC/1378 pts-miR156a TGACAGAAGAGAGTGA 0.7 3204 GCGC/1379pts-miR156b TGACAGAAGAGAGAGA 0.8 3205 GCAC/1380 pts-miR156cTGACAGAAGAGAGAGA 0.8 3206 GCAC/1381 rco-miR156a TGACAGAAGAGAGTGA 0.83207 GCACA/1382 rco-miR156b TGACAGAAGAGAGTGA 0.8 3208 GCACA/1383rco-miR156c TGACAGAAGAGAGTGA 0.8 3209 GCACA/1384 rco-miR156dTGACAGAAGAGAGTGA 0.8 3210 GCACA/1385 rco-miR156e TGACAGAAGAGAGAGA 0.853211 GCACA/1386 rco-miR156f TTGACAGAAGATAGAG 0.85 3212 AGCAC/1387rco-miR156g TTGACAGAAGATAGAG 0.85 3213 AGCAC/1388 rco-miR156hTTGACAGAAGATAGAG 0.85 3214 AGCAC/1389 sbi-miR156a TGACAGAAGAGAGTGA 0.753215 GCAC/1390 sbi-miR156b TGACAGAAGAGAGTGA 0.75 3216 GCAC/1391sbi-miR156c TGACAGAAGAGAGTGA 0.75 3217 GCAC/1392 sbi-miR156dTGACAGAAGAGAGAGA 0.85 3218 GCACA/1393 sbi-miR156e TGACAGAAGAGAGCGA 0.753219 GCAC/1394 sbi-miR156f TGACAGAAGAGAGTGA 0.75 3220 GCAC/1395sbi-miR156g TGACAGAAGAGAGTGA 0.75 3221 GCAC/1396 sbi-miR156hTGACAGAAGAGAGTGA 0.75 3222 GCAC/1397 sbi-miR156i TGACAGAAGAGAGTGA 0.753223 GCAC/1398 sin-miR156 TGACAGAAGAGAGAGA 0.8 3224 GCAC/1399sly-miR156a TTGACAGAAGATAGAG 0.85 3225 AGCAC/1400 sly-miR156bTTGACAGAAGATAGAG 0.85 3226 AGCAC/1401 sly-miR156c TTGACAGAAGATAGAG 0.853227 AGCAC/1402 smo-miR156a CGACAGAAGAGAGTGA 0.75 3228 GCAC/1403smo-miR156b CTGACAGAAGATAGAG 0.85 3229 AGCAC/1404 smo-miR156cTTGACAGAAGAAAGAG 0.8 3230 AGCAC/1405 smo-miR156d TTGACAGAAGACAGGG 0.753231 AGCAC/1406 sof-miR156 TGACAGAAGAGAGTGA 0.75 3232 GCAC/1407sof-miR156c TGACAGAAGAGAGAGA 0.8 3233 GCAC/1408 sof-miR156dTGACAGAAGAGAGAGA 0.8 3234 GCAC/1409 sof-miR156e TGACAGAAGAGAGAGA 0.83235 GCAC/1410 sof-miR156f TGACAGAAGAGAGAGA 0.8 3236 GCAC/1411sof-miR156g TGACAGAAGAGAGAGA 0.8 3237 GCAC/1412 sof-miR156hTGACAGAAGAGAGAGA 0.8 3238 GCAC/1413 sof-miR156u TGACAGAAGAGAGAGA 0.83239 GCAC/1414 spr-miR156 TGACAGAAGAGAGAGA 0.8 3240 GCAC/1415 ssp-miR156TGACAGAAGAGAGTGA 0.8 3241 GCACA/1416 stu-miR156a TGACAGAAGAGAGTGA 0.753242 GCAC/1417 stu-miR156b TGACAGAAGAGAGAGA 0.8 3243 GCAC/1418stu-miR156c TGACAGAAGAGAGAGA 0.8 3244 GCAC/1419 stu-miR156dTGACAGAAGAGAGAGA 0.8 3245 GCAC/1420 stu-miR156e TGACAGAAGAGAGAGA 0.83246 GCAC/1421 tae-miR156 TGACAGAAGAGAGTGA 0.8 3247 GCACA/1422tae-miR156a TGACAGAAGAGAGAGA 0.8 3248 GCAC/1423 tae-miR156bTGACAGAAGAGAGAGA 0.8 3249 GCAC/1424 tcc-miR156a TGACAGAAGAGAGAGA 0.853250 GCACA/1425 tcc-miR156b TGACAGAAGAGAGTGA 0.75 3251 GCAC/1426tcc-miR156c TGACAGAAGAGAGTGA 0.75 3252 GCAC/1427 tcc-miR156dTGACAGAAGAGAGTGA 0.75 3253 GCAC/1428 tcc-miR156e TTGACAGAAGATAGAG 0.853254 AGCAC/1429 tcc-miR156f TTGACAGAAGATAGAG 0.85 3255 AGCAC/1430tcc-miR156g TGACAGAAGAGAGTGA 0.75 3256 GCAC/1431 tre-miR156TGACAGAAGAGAGTGA 0.75 3257 GCAC/1432 vvi-miR156a TGACAGAAGAGAGGGA 0.753258 GCAC/1433 vvi-miR156b TGACAGAAGAGAGTGA 0.75 3259 GCAC/1434vvi-miR156c TGACAGAAGAGAGTGA 0.75 3260 GCAC/1435 vvi-miR156dTGACAGAAGAGAGTGA 0.75 3261 GCAC/1436 vvi-miR156e TGACAGAGGAGAGTGA 0.73262 GCAC/1437 vvi-miR156f TTGACAGAAGATAGAG 0.85 3263 AGCAC/1438vvi-miR156g TTGACAGAAGATAGAG 0.85 3264 AGCAC/1439 vvi-miR156hTGACAGAAGAGAGAGA 0.75 3265 GCAT/1440 vvi-miR156i TTGACAGAAGATAGAG 0.853266 AGCAC/1441 zel-miR156 TGACAGAAGAGAGAGA 0.8 3267 GCAC/1442zma-miR156a TGACAGAAGAGAGTGA 0.75 3268 GCAC/1443 zma-miR156bTGACAGAAGAGAGTGA 0.75 3269 GCAC/1444 zma-miR156c TGACAGAAGAGAGTGA 0.753270 GCAC/1445 zma-miR156d TGACAGAAGAGAGTGA 0.75 3271 GCAC/1446zma-miR156e TGACAGAAGAGAGTGA 0.75 3272 GCAC/1447 zma-miR156fTGACAGAAGAGAGTGA 0.75 3273 GCAC/1448 zma-miR156g TGACAGAAGAGAGTGA 0.753274 GCAC/1449 zma-miR156h TGACAGAAGAGAGTGA 0.75 3275 GCAC/1450zma-miR156i TGACAGAAGAGAGTGA 0.75 3276 GCAC/1451 zma-miR156jTGACAGAAGAGAGAGA 0.85 3277 GCACA/1452 zma-miR156k TGACAGAAGAGAGCGA 0.753278 GCAC/1453 zma-miR156l TGACAGAAGAGAGTGA 0.75 3279 GCAC/1454zma-miR156m TGACAGAAGAGAGTGA 0.75 3280 GCAC/1455 zma-miR156nTGACAGAAGAGAGTGA 0.75 3281 GCAC/1456 zma-miR156o TGACAGAAGAGAGTGA 0.753282 GCAC/1457 zma-miR156p TGACAGAAGAGAGAGA 0.8 3283 GCAC/1458zma-miR156q TGACAGAAGAGAGAGA 0.8 3284 GCAC/1459 zma-miR156rTGACAGAAGAGAGTGG 0.7 3285 GCAC/1460 ptc- ahy-miR159 TTTGGATTGAAGGGAGC0.95 3286 miRf10271- TCTA/1461 akr aly-miR159a TTTGGATTGAAGGGAGC 0.953287 TCTA/1462 aly-miR159b TTTGGATTGAAGGGAGC 0.9 3288 TCTT/1463aqc-miR159 TTTGGACTGAAGGGAGC 0.9 3289 TCTA/1464 ath-miR159aTTTGGATTGAAGGGAGC 0.95 3290 TCTA/1465 ath-miR159b TTTGGATTGAAGGGAGC 0.93291 TCTT/1466 bdi-miR159 CTTGGATTGAAGGGAGC 0.9 3292 TCT/1467 bna-miR159TTTGGATTGAAGGGAGC 0.95 3293 TCTA/1468 bra-miR159a TTTGGATTGAAGGGAGC 0.953294 TCTA/1469 csi-miR159 TTTGGATTGAAGGGAGC 0.95 3295 TCTA/1470far-miR159 TTTGGATTGAAGGGAGC 0.9 3296 TCTG/1471 gma-miR159a-3pTTTGGATTGAAGGGAGC 0.95 3297 TCTA/1472 hvu-miR159a TTTGGATTGAAGGGAGC 0.93298 TCTG/1473 hvu-miR159b TTTGGATTGAAGGGAGC 0.9 3299 TCTG/1474mtr-miR159a TTTGGATTGAAGGGAGC 0.95 3300 TCTA/1475 osa-miR159a.1TTTGGATTGAAGGGAGC 0.9 3301 TCTG/1476 osa-miR159b TTTGGATTGAAGGGAGC 0.93302 TCTG/1477 osa-miR159c ATTGGATTGAAGGGAG 0.9 3303 CTCCA/1478osa-miR159f CTTGGATTGAAGGGAGC 0.95 3304 TCTA/1479 pta-miR159aTTGGATTGAAGGGAGCT 0.9 3305 CCA/1480 ptc-miR159a TTTGGATTGAAGGGAGC 0.953306 TCTA/1481 ptc-miR159b TTTGGATTGAAGGGAGC 0.95 3307 TCTA/1482ptc-miR159c TTTGGATTGAAGGGAGC 0.95 3308 TCTA/1483 pvu-miR159a.1TTTGGATTGAAGGGAGC 0.95 3309 TCTA/1484 rco-miR159 TTTGGATTGAAGGGAGC 0.953310 TCTA/1485 sbi-miR159a TTTGGATTGAAGGGAGC 0.9 3311 TCTG/1486sly-miR159 TTTGGATTGAAGGGAGC 0.95 3312 TCTA/1487 sof-miR159aTTTGGATTGAAGGGAGC 0.9 3313 TCTG/1488 sof-miR159b TTTGGATTGAAGGGAGC 0.93314 TCTG/1489 sof-miR159d TTTGGATTGAAGGGAGC 0.9 3315 TCTG/1490ssp-miR159a TTTGGATTGAAGGGAGC 0.9 3316 TCTG/1491 tae-miR159aTTTGGATTGAAGGGAGC 0.9 3317 TCTG/1492 tae-miR159b TTTGGATTGAAGGGAGC 0.93318 TCTG/1493 vvi-miR159c TTTGGATTGAAGGGAGC 0.95 3319 TCTA/1494zma-miR159a TTTGGATTGAAGGGAGC 0.9 3320 TCTG/1495 zma-miR159bTTTGGATTGAAGGGAGC 0.9 3321 TCTG/1496 zma-miR159f TTTGGATTGAAGGGAGC 0.93322 TCTG/1497 zma-miR159j TTTGGATTGAAGGGAGC 0.9 3323 TCTG/1498zma-miR159k TTTGGATTGAAGGGAGC 0.9 3324 TCTG/1499 ptc- gma-miR156gACAGAAGATAGAGAGC 0.9 3325 miRf10985- ACAG/1500 akr ath- ahy-miR156aTGACAGAAGAGAGAGA 0.9 3326 miR157a GCAC/1501 ahy-miR156b-5pTTGACAGAAGATAGAG 1 3327 AGCAC/1502 ahy-miR156c TTGACAGAAGAGAGAG 0.953328 AGCAC/1503 aly-miR156a TGACAGAAGAGAGTGA 0.86 3329 GCAC/1504aly-miR156b TGACAGAAGAGAGTGA 0.86 3330 GCAC/1505 aly-miR156cTGACAGAAGAGAGTGA 0.86 3331 GCAC/1506 aly-miR156d TGACAGAAGAGAGTGA 0.863332 GCAC/1507 aly-miR156e TGACAGAAGAGAGTGA 0.86 3333 GCAC/1508aly-miR156f TGACAGAAGAGAGTGA 0.86 3334 GCAC/1509 aly-miR156gCGACAGAAGAGAGTGA 0.81 3335 GCAC/1510 aly-miR156h TGACAGAAGAAAGAGA 0.93336 GCAC/1511 aqc-miR156a TGACAGAAGATAGAGA 0.95 3337 GCAC/1512aqc-miR156b TGACAGAAGATAGAGA 0.95 3338 GCAC/1513 ath-miR156aTGACAGAAGAGAGTGA 0.86 3339 GCAC/1514 ath-miR156b TGACAGAAGAGAGTGA 0.863340 GCAC/1515 ath-miR156c TGACAGAAGAGAGTGA 0.86 3341 GCAC/1516ath-miR156d TGACAGAAGAGAGTGA 0.86 3342 GCAC/1517 ath-miR156eTGACAGAAGAGAGTGA 0.86 3343 GCAC/1518 ath-miR156f TGACAGAAGAGAGTGA 0.863344 GCAC/1519 ath-miR156g CGACAGAAGAGAGTGA 0.81 3345 GCAC/1520ath-miR156h TGACAGAAGAAAGAGA 0.9 3346 GCAC/1521 ath-miR156mTGACAGAAGAGAGAGA 0.9 3347 GCAC/1522 ath-miR156o TGACAGAAGAGAGAGA 0.93348 GCAC/1523 ath-miR156p TGACAGAAGAGAGAGA 0.9 3349 GCAC/1524ath-miR156q TGACAGAAGAGAGAGA 0.9 3350 GCAC/1525 ath-miR156rTGACAGAAGAGAGAGA 0.9 3351 GCAC/1526 ath-miR156s TGACAGAAGAGAGAGA 0.93352 GCAC/1527 bdi-miR156 TGACAGAAGAGAGAGA 0.9 3353 GCACA/1528bdi-miR156b TGACAGAAGAGAGTGA 0.86 3354 GCAC/1529 bdi-miR156cTGACAGAAGAGAGTGA 0.86 3355 GCAC/1530 bdi-miR156d TGACAGAAGAGAGTGA 0.863356 GCAC/1531 bna-miR156a TGACAGAAGAGAGTGA 0.86 3357 GCACA/1532bna-miR156b TTGACAGAAGATAGAG 1 3358 AGCAC/1533 bna-miR156cTTGACAGAAGATAGAG 1 3359 AGCAC/1534 can-miR156a TGACAGAAGAGAGAGA 0.9 3360GCAC/1535 can-miR156b TGACAGAAGAGAGGGA 0.86 3361 GCAC/1536 cpt-miR156aTGACAGAAGAGAGTGA 0.86 3362 GCAC/1537 cpt-miR156b TGACAGAAGAGAGAGA 0.93363 GCAC/1538 cru-miR156 TGACAGAAGAGAGAGA 0.9 3364 GCAC/1539 csi-miR156TGACAGAAGAGAGTGA 0.86 3365 GCAC/1540 csi-miR156a TGACAGAAGAGAGAGA 0.93366 GCAC/1541 csi-miR156b TGACAGAAGAGAGAGA 0.9 3367 GCAC/1542ctr-miR156 TGACAGAAGAGAGTGA 0.86 3368 GCAC/1543 eca-miR156TGACAGAAGAGAGAGA 0.9 3369 GCAC/1544 far-miR156a TGACAGAAGAGAGAGA 0.93370 GCACA/1545 far-miR156b TTGACAGAAGAGAGAG 0.95 3371 AGCAC/1546ghr-miR156a TGACAGAAGAGAGTGA 0.86 3372 GCAC/1547 ghr-miR156bTGACAGAAGAGAGTGA 0.86 3373 GCAC/1548 ghr-miR156c TGTCAGAAGAGAGTGA 0.813374 GCAC/1549 ghr-miR156d TGACAGAAGAGAGTGA 0.86 3375 GCAC/1550gma-miR156a TGACAGAAGAGAGTGA 0.86 3376 GCAC/1551 gma-miR156bTGACAGAAGAGAGAGA 0.9 3377 GCACA/1552 gma-miR156c TTGACAGAAGATAGAG 1 3378AGCAC/1553 gma-miR156d TTGACAGAAGATAGAG 1 3379 AGCAC/1554 gma-miR156eTTGACAGAAGATAGAG 1 3380 AGCAC/1555 gma-miR156f TTGACAGAAGAGAGAG 0.953381 AGCACA/1556 gma-miR156g ACAGAAGATAGAGAGC 0.86 3382 ACAG/1557gma-miR156h TGACAGAAGAGAGAGA 0.9 3383 GCAC/1558 gma-miR156iTGACAGAAGAGAGAGA 0.9 3384 GCAC/1559 han-miR156 TGACAGAAGAGAGAGA 0.9 3385GCAC/1560 hvs-miR156 TGACAGAAGAGAGAGA 0.9 3386 GCAC/1561 hvu-miR156TGACAGAAGAGAGTGA 0.86 3387 GCACA/1562 hvv-miR156a TGACAGAAGAGAGTGA 0.863388 GCAC/1563 hvv-miR156b TGACAGAAGAGAGAGA 0.9 3389 GCAC/1564hvv-miR156c TGACAGAAGAGAGAGA 0.9 3390 GCAC/1565 hvv-miR156dTGACAGAAGAGAGAGA 0.9 3391 GCAC/1566 lja-miR156 TGACAGAAGAGAGAGA 0.9 3392GCAC/1567 lsa-miR156 TGACAGAAGAGAGAGA 0.9 3393 GCAC/1568 mdo-miR156aTGACAGAAGAGAGAGA 0.9 3394 GCAC/1569 mdo-miR156b TGACAGAAGAGAGAGA 0.93395 GCAC/1570 mtr-miR156 TGACAGAAGAGAGAGA 0.9 3396 GCACA/1571mtr-miR156b TGACAGAAGAGAGTGA 0.86 3397 GCAC/1572 mtr-miR156cTGACAGAAGAGAGTGA 0.86 3398 GCAC/1573 mtr-miR156d TGACAGAAGAGAGTGA 0.863399 GCAC/1574 mtr-miR156e TTGACAGAAGATAGAG 1 3400 AGCAC/1575mtr-miR156f TTGACAGAAGATAGAG 1 3401 AGCAC/1576 mtr-miR156gTTGACAGAAGATAGAG 0.95 3402 GGCAC/1577 mtr-miR156h TTGACAGAAGATAGAG 13403 AGCAC/1578 mtr-miR156i TGACAGAAGAGAGTGA 0.86 3404 GCAC/1579nbe-miR156a TGACAGAAGAGAGAGA 0.9 3405 GCAC/1580 nbe-miR156bTGACAGAAGAGAGAGA 0.9 3406 GCAC/1581 oru-miR156 TGACAGAAGAGAGTGA 0.863407 GCAC/1582 osa-miR156a TGACAGAAGAGAGTGA 0.86 3408 GCAC/1583osa-miR156b TGACAGAAGAGAGTGA 0.86 3409 GCAC/1584 osa-miR156cTGACAGAAGAGAGTGA 0.86 3410 GCAC/1585 osa-miR156d TGACAGAAGAGAGTGA 0.863411 GCAC/1586 osa-miR156e TGACAGAAGAGAGTGA 0.86 3412 GCAC/1587osa-miR156f TGACAGAAGAGAGTGA 0.86 3413 GCAC/1588 osa-miR156gTGACAGAAGAGAGTGA 0.86 3414 GCAC/1589 osa-miR156h TGACAGAAGAGAGTGA 0.863415 GCAC/1590 osa-miR156i TGACAGAAGAGAGTGA 0.86 3416 GCAC/1591osa-miR156j TGACAGAAGAGAGTGA 0.86 3417 GCAC/1592 osa-miR156kTGACAGAAGAGAGAGA 0.9 3418 GCACA/1593 osa-miR156l CGACAGAAGAGAGTGA 0.763419 GCATA/1594 osa-miR156m TGACAGAAGAGAGTGA 0.86 3420 GCAC/1595osa-miR156n TGACAGAAGAGAGTGA 0.86 3421 GCAC/1596 osa-miR156oTGACAGAAGAGAGTGA 0.81 3422 GCAT/1597 osa-miR156p TGACAGAAGAGAGTGA 0.813423 GCTC/1598 osa-miR156q TGACAGAACAGAGTGA 0.81 3424 GCAC/1599osa-miR156r TGACAGAAGAGAGAGA 0.9 3425 GCAC/1600 par-miR156TGACAGAAGAGAGAGA 0.9 3426 GCAC/1601 pga-miR156a GATCCTAGAGCCCTTGA 0.383427 GCC/1602 ppd-miR156 TGACAGAAGAGAGAGA 0.9 3428 GCAC/1603 ppr-miR156TGACAGAAGAGAGTGA 0.86 3429 GCAC/1604 ppt-miR156a TGACAGAAGAGAGTGA 0.863430 GCAC/1605 ppt-miR156b TGACAGAAGAGAGTGA 0.86 3431 GCAC/1606ppt-miR156c TGACAGAAGAGAGTGA 0.86 3432 GCAC/1607 pta-miR156aCAGAAGATAGAGAGCA 0.81 3433 CATC/1608 pta-miR156b CAGAAGATAGAGAGCA 0.813434 CAAC/1609 ptc-miR156a TGACAGAAGAGAGTGA 0.86 3435 GCAC/1610ptc-miR156b TGACAGAAGAGAGTGA 0.86 3436 GCAC/1611 ptc-miR156cTGACAGAAGAGAGTGA 0.86 3437 GCAC/1612 ptc-miR156d TGACAGAAGAGAGTGA 0.863438 GCAC/1613 ptc-miR156e TGACAGAAGAGAGTGA 0.86 3439 GCAC/1614ptc-miR156f TGACAGAAGAGAGTGA 0.86 3440 GCAC/1615 ptc-miR156gTTGACAGAAGATAGAG 1 3441 AGCAC/1616 ptc-miR156h TTGACAGAAGATAGAG 1 3442AGCAC/1617 ptc-miR156i TTGACAGAAGATAGAG 1 3443 AGCAC/1618 ptc-miR156jTTGACAGAAGATAGAG 1 3444 AGCAC/1619 ptc-miR156k TGACAGAAGAGAGGGA 0.863445 GCAC/1620 ptr-miR156 TGACAGAAGAGAGAGA 0.9 3446 GCAC/1621pts-miR156a TGACAGAAGAGAGTGA 0.81 3447 GCGC/1622 pts-miR156bTGACAGAAGAGAGAGA 0.9 3448 GCAC/1623 pts-miR156c TGACAGAAGAGAGAGA 0.93449 GCAC/1624 rco-miR156a TGACAGAAGAGAGTGA 0.86 3450 GCACA/1625rco-miR156b TGACAGAAGAGAGTGA 0.86 3451 GCACA/1626 rco-miR156cTGACAGAAGAGAGTGA 0.86 3452 GCACA/1627 rco-miR156d TGACAGAAGAGAGTGA 0.863453 GCACA/1628 rco-miR156e TGACAGAAGAGAGAGA 0.9 3454 GCACA/1629rco-miR156f TTGACAGAAGATAGAG 1 3455 AGCAC/1630 rco-miR156gTTGACAGAAGATAGAG 1 3456 AGCAC/1631 rco-miR156h TTGACAGAAGATAGAG 1 3457AGCAC/1632 sbi-miR156a TGACAGAAGAGAGTGA 0.86 3458 GCAC/1633 sbi-miR156bTGACAGAAGAGAGTGA 0.86 3459 GCAC/1634 sbi-miR156c TGACAGAAGAGAGTGA 0.863460 GCAC/1635 sbi-miR156d TGACAGAAGAGAGAGA 0.9 3461 GCACA/1636sbi-miR156e TGACAGAAGAGAGCGA 0.86 3462 GCAC/1637 sbi-miR156fTGACAGAAGAGAGTGA 0.86 3463 GCAC/1638 sbi-miR156g TGACAGAAGAGAGTGA 0.863464 GCAC/1639 sbi-miR156h TGACAGAAGAGAGTGA 0.86 3465 GCAC/1640sbi-miR156i TGACAGAAGAGAGTGA 0.86 3466 GCAC/1641 sin-miR156TGACAGAAGAGAGAGA 0.9 3467 GCAC/1642 sly-miR156a TTGACAGAAGATAGAG 1 3468AGCAC/1643 sly-miR156b TTGACAGAAGATAGAG 1 3469 AGCAC/1644 sly-miR156cTTGACAGAAGATAGAG 1 3470 AGCAC/1645 smo-miR156a CGACAGAAGAGAGTGA 0.813471 GCAC/1646 smo-miR156b CTGACAGAAGATAGAG 0.95 3472 AGCAC/1647smo-miR156c TTGACAGAAGAAAGAG 0.95 3473 AGCAC/1648 smo-miR156dTTGACAGAAGACAGGG 0.9 3474 AGCAC/1649 sof-miR156 TGACAGAAGAGAGTGA 0.863475 GCAC/1650 sof-miR156c TGACAGAAGAGAGAGA 0.9 3476 GCAC/1651sof-miR156d TGACAGAAGAGAGAGA 0.9 3477 GCAC/1652 sof-miR156eTGACAGAAGAGAGAGA 0.9 3478 GCAC/1653 sof-miR156f TGACAGAAGAGAGAGA 0.93479 GCAC/1654 sof-miR156g TGACAGAAGAGAGAGA 0.9 3480 GCAC/1655sof-miR156h TGACAGAAGAGAGAGA 0.9 3481 GCAC/1656 sof-miR156uTGACAGAAGAGAGAGA 0.9 3482 GCAC/1657 spr-miR156 TGACAGAAGAGAGAGA 0.9 3483GCAC/1658 ssp-miR156 TGACAGAAGAGAGTGA 0.86 3484 GCACA/1659 stu-miR156aTGACAGAAGAGAGTGA 0.86 3485 GCAC/1660 stu-miR156b TGACAGAAGAGAGAGA 0.93486 GCAC/1661 stu-miR156c TGACAGAAGAGAGAGA 0.9 3487 GCAC/1662stu-miR156d TGACAGAAGAGAGAGA 0.9 3488 GCAC/1663 stu-miR156eTGACAGAAGAGAGAGA 0.9 3489 GCAC/1664 tae-miR156 TGACAGAAGAGAGTGA 0.863490 GCACA/1665 tae-miR156a TGACAGAAGAGAGAGA 0.9 3491 GCAC/1666tae-miR156b TGACAGAAGAGAGAGA 0.9 3492 GCAC/1667 tcc-miR156aTGACAGAAGAGAGAGA 0.9 3493 GCACA/1668 tcc-miR156b TGACAGAAGAGAGTGA 0.863494 GCAC/1669 tcc-miR156c TGACAGAAGAGAGTGA 0.86 3495 GCAC/1670tcc-miR156d TGACAGAAGAGAGTGA 0.86 3496 GCAC/1671 tcc-miR156eTTGACAGAAGATAGAG 1 3497 AGCAC/1672 tcc-miR156f TTGACAGAAGATAGAG 1 3498AGCAC/1673 tcc-miR156g TGACAGAAGAGAGTGA 0.86 3499 GCAC/1674 tre-miR156TGACAGAAGAGAGTGA 0.86 3500 GCAC/1675 vvi-miR156a TGACAGAAGAGAGGGA 0.863501 GCAC/1676 vvi-miR156b TGACAGAAGAGAGTGA 0.86 3502 GCAC/1677vvi-miR156c TGACAGAAGAGAGTGA 0.86 3503 GCAC/1678 vvi-miR156dTGACAGAAGAGAGTGA 0.86 3504 GCAC/1679 vvi-miR156e TGACAGAGGAGAGTGA 0.813505 GCAC/1680 vvi-miR156f TTGACAGAAGATAGAG 1 3506 AGCAC/1681vvi-miR156g TTGACAGAAGATAGAG 1 3507 AGCAC/1682 vvi-miR156hTGACAGAAGAGAGAGA 0.86 3508 GCAT/1683 vvi-miR156i TTGACAGAAGATAGAG 1 3509AGCAC/1684 zel-miR156 TGACAGAAGAGAGAGA 0.9 3510 GCAC/1685 zma-miR156aTGACAGAAGAGAGTGA 0.86 3511 GCAC/1686 zma-miR156b TGACAGAAGAGAGTGA 0.863512 GCAC/1687 zma-miR156c TGACAGAAGAGAGTGA 0.86 3513 GCAC/1688zma-miR156d TGACAGAAGAGAGTGA 0.86 3514 GCAC/1689 zma-miR156eTGACAGAAGAGAGTGA 0.86 3515 GCAC/1690 zma-miR156f TGACAGAAGAGAGTGA 0.863516 GCAC/1691 zma-miR156g TGACAGAAGAGAGTGA 0.86 3517 GCAC/1692zma-miR156h TGACAGAAGAGAGTGA 0.86 3518 GCAC/1693 zma-miR156iTGACAGAAGAGAGTGA 0.86 3519 GCAC/1694 zma-miR156j TGACAGAAGAGAGAGA 0.93520 GCACA/1695 zma-miR156k TGACAGAAGAGAGCGA 0.86 3521 GCAC/1696zma-miR1561 TGACAGAAGAGAGTGA 0.86 3522 GCAC/1697 zma-miR156mTGACAGAAGAGAGTGA 0.86 3523 GCAC/1698 zma-miR156n TGACAGAAGAGAGTGA 0.863524 GCAC/1699 zma-miR156o TGACAGAAGAGAGTGA 0.86 3525 GCAC/1700zma-miR156p TGACAGAAGAGAGAGA 0.9 3526 GCAC/1701 zma-miR156qTGACAGAAGAGAGAGA 0.9 3527 GCAC/1702 zma-miR156r TGACAGAAGAGAGTGG 0.813528 GCAC/1703 smo- ahy-miR156a TGACAGAAGAGAGAGA 0.9 3529 miR156bGCAC/1704 ahy-miR156b-5p TTGACAGAAGATAGAG 0.95 3530 AGCAC/1705ahy-miR156c TTGACAGAAGAGAGAG 0.9 3531 AGCAC/1706 aly-miR156aTGACAGAAGAGAGTGA 0.86 3532 GCAC/1707 aly-miR156b TGACAGAAGAGAGTGA 0.863533 GCAC/1708 aly-miR156c TGACAGAAGAGAGTGA 0.86 3534 GCAC/1709aly-miR156d TGACAGAAGAGAGTGA 0.86 3535 GCAC/1710 aly-miR156eTGACAGAAGAGAGTGA 0.86 3536 GCAC/1711 aly-miR156f TGACAGAAGAGAGTGA 0.863537 GCAC/1712 aly-miR156g CGACAGAAGAGAGTGA 0.81 3538 GCAC/1713aly-miR156h TGACAGAAGAAAGAGA 0.9 3539 GCAC/1714 aqc-miR156aTGACAGAAGATAGAGA 0.95 3540 GCAC/1715 aqc-miR156b TGACAGAAGATAGAGA 0.953541 GCAC/1716 ath-miR156a TGACAGAAGAGAGTGA 0.86 3542 GCAC/1717ath-miR156b TGACAGAAGAGAGTGA 0.86 3543 GCAC/1718 ath-miR156cTGACAGAAGAGAGTGA 0.86 3544 GCAC/1719 ath-miR156d TGACAGAAGAGAGTGA 0.863545 GCAC/1720 ath-miR156e TGACAGAAGAGAGTGA 0.86 3546 GCAC/1721ath-miR156f TGACAGAAGAGAGTGA 0.86 3547 GCAC/1722 ath-miR156gCGACAGAAGAGAGTGA 0.81 3548 GCAC/1723 ath-miR156h TGACAGAAGAAAGAGA 0.93549 GCAC/1724 ath-miR156m TGACAGAAGAGAGAGA 0.9 3550 GCAC/1725ath-miR156o TGACAGAAGAGAGAGA 0.9 3551 GCAC/1726 ath-miR156pTGACAGAAGAGAGAGA 0.9 3552 GCAC/1727 ath-miR156q TGACAGAAGAGAGAGA 0.93553 GCAC/1728 ath-miR156r TGACAGAAGAGAGAGA 0.9 3554 GCAC/1729ath-miR156s TGACAGAAGAGAGAGA 0.9 3555 GCAC/1730 bdi-miR156TGACAGAAGAGAGAGA 0.9 3556 GCACA/1731 bdi-miR156b TGACAGAAGAGAGTGA 0.863557 GCAC/1732 bdi-miR156c TGACAGAAGAGAGTGA 0.86 3558 GCAC/1733bdi-miR156d TGACAGAAGAGAGTGA 0.86 3559 GCAC/1734 bna-miR156aTGACAGAAGAGAGTGA 0.86 3560 GCACA/1735 bna-miR156b TTGACAGAAGATAGAG 0.953561 AGCAC/1736 bna-miR156c TTGACAGAAGATAGAG 0.95 3562 AGCAC/1737can-miR156a TGACAGAAGAGAGAGA 0.9 3563 GCAC/1738 can-miR156bTGACAGAAGAGAGGGA 0.86 3564 GCAC/1739 cpt-miR156a TGACAGAAGAGAGTGA 0.863565 GCAC/1740 cpt-miR156b TGACAGAAGAGAGAGA 0.9 3566 GCAC/1741cru-miR156 TGACAGAAGAGAGAGA 0.9 3567 GCAC/1742 csi-miR156TGACAGAAGAGAGTGA 0.86 3568 GCAC/1743 csi-miR156a TGACAGAAGAGAGAGA 0.93569 GCAC/1744 csi-miR156b TGACAGAAGAGAGAGA 0.9 3570 GCAC/1745ctr-miR156 TGACAGAAGAGAGTGA 0.86 3571 GCAC/1746 eca-miR156TGACAGAAGAGAGAGA 0.9 3572 GCAC/1747 far-miR156a TGACAGAAGAGAGAGA 0.93573 GCACA/1748 far-miR156b TTGACAGAAGAGAGAG 0.9 3574 AGCAC/1749ghr-miR156a TGACAGAAGAGAGTGA 0.86 3575 GCAC/1750 ghr-miR156bTGACAGAAGAGAGTGA 0.86 3576 GCAC/1751 ghr-miR156c TGTCAGAAGAGAGTGA 0.813577 GCAC/1752 ghr-miR156d TGACAGAAGAGAGTGA 0.86 3578 GCAC/1753gma-miR156a TGACAGAAGAGAGTGA 0.86 3579 GCAC/1754 gma-miR156bTGACAGAAGAGAGAGA 0.9 3580 GCACA/1755 gma-miR156c TTGACAGAAGATAGAG 0.953581 AGCAC/1756 gma-miR156d TTGACAGAAGATAGAG 0.95 3582 AGCAC/1757gma-miR156e TTGACAGAAGATAGAG 0.95 3583 AGCAC/1758 gma-miR156fTTGACAGAAGAGAGAG 0.9 3584 AGCACA/1759 gma-miR156g ACAGAAGATAGAGAGC 0.863585 ACAG/1760 gma-miR156h TGACAGAAGAGAGAGA 0.9 3586 GCAC/1761gma-miR156i TGACAGAAGAGAGAGA 0.9 3587 GCAC/1762 han-miR156TGACAGAAGAGAGAGA 0.9 3588 GCAC/1763 hvs-miR156 TGACAGAAGAGAGAGA 0.9 3589GCAC/1764 hvu-miR156 TGACAGAAGAGAGTGA 0.86 3590 GCACA/1765 hvv-miR156aTGACAGAAGAGAGTGA 0.86 3591 GCAC/1766 hvv-miR156b TGACAGAAGAGAGAGA 0.93592 GCAC/1767 hvv-miR156c TGACAGAAGAGAGAGA 0.9 3593 GCAC/1768hvv-miR156d TGACAGAAGAGAGAGA 0.9 3594 GCAC/1769 lja-miR156TGACAGAAGAGAGAGA 0.9 3595 GCAC/1770 lsa-miR156 TGACAGAAGAGAGAGA 0.9 3596GCAC/1771 mdo-miR156a TGACAGAAGAGAGAGA 0.9 3597 GCAC/1772 mdo-miR156bTGACAGAAGAGAGAGA 0.9 3598 GCAC/1773 mtr-miR156 TGACAGAAGAGAGAGA 0.9 3599GCACA/1774 mtr-miR156b TGACAGAAGAGAGTGA 0.86 3600 GCAC/1775 mtr-miR156cTGACAGAAGAGAGTGA 0.86 3601 GCAC/1776 mtr-miR156d TGACAGAAGAGAGTGA 0.863602 GCAC/1777 mtr-miR156e TTGACAGAAGATAGAG 0.95 3603 AGCAC/1778mtr-miR156f TTGACAGAAGATAGAG 0.95 3604 AGCAC/1779 mtr-miR156gTTGACAGAAGATAGAG 0.9 3605 GGCAC/1780 mtr-miR156h TTGACAGAAGATAGAG 0.953606 AGCAC/1781 mtr-miR156i TGACAGAAGAGAGTGA 0.86 3607 GCAC/1782nbe-miR156a TGACAGAAGAGAGAGA 0.9 3608 GCAC/1783 nbe-miR156bTGACAGAAGAGAGAGA 0.9 3609 GCAC/1784 oru-miR156 TGACAGAAGAGAGTGA 0.863610 GCAC/1785 osa-miR156a TGACAGAAGAGAGTGA 0.86 3611 GCAC/1786osa-miR156b TGACAGAAGAGAGTGA 0.86 3612 GCAC/1787 osa-miR156cTGACAGAAGAGAGTGA 0.86 3613 GCAC/1788 osa-miR156d TGACAGAAGAGAGTGA 0.863614 GCAC/1789 osa-miR156e TGACAGAAGAGAGTGA 0.86 3615 GCAC/1790osa-miR156f TGACAGAAGAGAGTGA 0.86 3616 GCAC/1791 osa-miR156gTGACAGAAGAGAGTGA 0.86 3617 GCAC/1792 osa-miR156h TGACAGAAGAGAGTGA 0.863618 GCAC/1793 osa-miR156i TGACAGAAGAGAGTGA 0.86 3619 GCAC/1794osa-miR156j TGACAGAAGAGAGTGA 0.86 3620 GCAC/1795 osa-miR156kTGACAGAAGAGAGAGA 0.9 3621 GCACA/1796 osa-miR156l CGACAGAAGAGAGTGA 0.763622 GCATA/1797 osa-miR156m TGACAGAAGAGAGTGA 0.86 3623 GCAC/1798osa-miR156n TGACAGAAGAGAGTGA 0.86 3624 GCAC/1799 osa-miR156oTGACAGAAGAGAGTGA 0.81 3625 GCAT/1800 osa-miR156p TGACAGAAGAGAGTGA 0.813626 GCTC/1801 osa-miR156q TGACAGAACAGAGTGA 0.81 3627 GCAC/1802osa-miR156r TGACAGAAGAGAGAGA 0.9 3628 GCAC/1803 par-miR156TGACAGAAGAGAGAGA 0.9 3629 GCAC/1804 ppd-miR156 TGACAGAAGAGAGAGA 0.9 3630GCAC/1805 ppr-miR156 TGACAGAAGAGAGTGA 0.86 3631 GCAC/1806 ppt-miR156aTGACAGAAGAGAGTGA 0.86 3632 GCAC/1807 ppt-miR156b TGACAGAAGAGAGTGA 0.863633 GCAC/1808 ppt-miR156c TGACAGAAGAGAGTGA 0.86 3634 GCAC/1809pta-miR156a CAGAAGATAGAGAGCA 0.81 3635 CATC/1810 pta-miR156bCAGAAGATAGAGAGCA 0.81 3636 CAAC/1811 ptc-miR156a TGACAGAAGAGAGTGA 0.863637 GCAC/1812 ptc-miR156b TGACAGAAGAGAGTGA 0.86 3638 GCAC/1813ptc-miR156c TGACAGAAGAGAGTGA 0.86 3639 GCAC/1814 ptc-miR156dTGACAGAAGAGAGTGA 0.86 3640 GCAC/1815 ptc-miR156e TGACAGAAGAGAGTGA 0.863641 GCAC/1816 ptc-miR156f TGACAGAAGAGAGTGA 0.86 3642 GCAC/1817ptc-miR156g TTGACAGAAGATAGAG 0.95 3643 AGCAC/1818 ptc-miR156hTTGACAGAAGATAGAG 0.95 3644 AGCAC/1819 ptc-miR156i TTGACAGAAGATAGAG 0.953645 AGCAC/1820 ptc-miR156j TTGACAGAAGATAGAG 0.95 3646 AGCAC/1821ptc-miR156k TGACAGAAGAGAGGGA 0.86 3647 GCAC/1822 ptr-miR156TGACAGAAGAGAGAGA 0.9 3648 GCAC/1823 pts-miR156a TGACAGAAGAGAGTGA 0.813649 GCGC/1824 pts-miR156b TGACAGAAGAGAGAGA 0.9 3650 GCAC/1825pts-miR156c TGACAGAAGAGAGAGA 0.9 3651 GCAC/1826 rco-miR156aTGACAGAAGAGAGTGA 0.86 3652 GCACA/1827 rco-miR156b TGACAGAAGAGAGTGA 0.863653 GCACA/1828 rco-miR156c TGACAGAAGAGAGTGA 0.86 3654 GCACA/1829rco-miR156d TGACAGAAGAGAGTGA 0.86 3655 GCACA/1830 rco-miR156eTGACAGAAGAGAGAGA 0.9 3656 GCACA/1831 rco-miR156f TTGACAGAAGATAGAG 0.953657 AGCAC/1832 rco-miR156g TTGACAGAAGATAGAG 0.95 3658 AGCAC/1833rco-miR156h TTGACAGAAGATAGAG 0.95 3659 AGCAC/1834 sbi-miR156aTGACAGAAGAGAGTGA 0.86 3660 GCAC/1835 sbi-miR156b TGACAGAAGAGAGTGA 0.863661 GCAC/1836 sbi-miR156c TGACAGAAGAGAGTGA 0.86 3662 GCAC/1837sbi-miR156d TGACAGAAGAGAGAGA 0.9 3663 GCACA/1838 sbi-miR156eTGACAGAAGAGAGCGA 0.86 3664 GCAC/1839 sbi-miR156f TGACAGAAGAGAGTGA 0.863665 GCAC/1840 sbi-miR156g TGACAGAAGAGAGTGA 0.86 3666 GCAC/1841sbi-miR156h TGACAGAAGAGAGTGA 0.86 3667 GCAC/1842 sbi-miR156iTGACAGAAGAGAGTGA 0.86 3668 GCAC/1843 sin-miR156 TGACAGAAGAGAGAGA 0.93669 GCAC/1844 sly-miR156a TTGACAGAAGATAGAG 0.95 3670 AGCAC/1845sly-miR156b TTGACAGAAGATAGAG 0.95 3671 AGCAC/1846 sly-miR156cTTGACAGAAGATAGAG 0.95 3672 AGCAC/1847 smo-miR156a CGACAGAAGAGAGTGA 0.813673 GCAC/1848 smo-miR156c TTGACAGAAGAAAGAG 0.9 3674 AGCAC/1849smo-miR156d TTGACAGAAGACAGGG 0.86 3675 AGCAC/1850 sof-miR156TGACAGAAGAGAGTGA 0.86 3676 GCAC/1851 sof-miR156c TGACAGAAGAGAGAGA 0.93677 GCAC/1852 sof-miR156d TGACAGAAGAGAGAGA 0.9 3678 GCAC/1853sof-miR156e TGACAGAAGAGAGAGA 0.9 3679 GCAC/1854 sof-miR156fTGACAGAAGAGAGAGA 0.9 3680 GCAC/1855 sof-miR156g TGACAGAAGAGAGAGA 0.93681 GCAC/1856 sof-miR156h TGACAGAAGAGAGAGA 0.9 3682 GCAC/1857sof-miR156u TGACAGAAGAGAGAGA 0.9 3683 GCAC/1858 spr-miR156TGACAGAAGAGAGAGA 0.9 3684 GCAC/1859 ssp-miR156 TGACAGAAGAGAGTGA 0.863685 GCACA/1860 stu-miR156a TGACAGAAGAGAGTGA 0.86 3686 GCAC/1861stu-miR156b TGACAGAAGAGAGAGA 0.9 3687 GCAC/1862 stu-miR156cTGACAGAAGAGAGAGA 0.9 3688 GCAC/1863 stu-miR156d TGACAGAAGAGAGAGA 0.93689 GCAC/1864 stu-miR156e TGACAGAAGAGAGAGA 0.9 3690 GCAC/1865tae-miR156 TGACAGAAGAGAGTGA 0.86 3691 GCACA/1866 tae-miR156aTGACAGAAGAGAGAGA 0.9 3692 GCAC/1867 tae-miR156b TGACAGAAGAGAGAGA 0.93693 GCAC/1868 tcc-miR156a TGACAGAAGAGAGAGA 0.9 3694 GCACA/1869tcc-miR156b TGACAGAAGAGAGTGA 0.86 3695 GCAC/1870 tcc-miR156cTGACAGAAGAGAGTGA 0.86 3696 GCAC/1871 tcc-miR156d TGACAGAAGAGAGTGA 0.863697 GCAC/1872 tcc-miR156e TTGACAGAAGATAGAG 0.95 3698 AGCAC/1873tcc-miR156f TTGACAGAAGATAGAG 0.95 3699 AGCAC/1874 tcc-miR156gTGACAGAAGAGAGTGA 0.86 3700 GCAC/1875 tre-miR156 TGACAGAAGAGAGTGA 0.863701 GCAC/1876 vvi-miR156a TGACAGAAGAGAGGGA 0.86 3702 GCAC/1877vvi-miR156b TGACAGAAGAGAGTGA 0.86 3703 GCAC/1878 vvi-miR156cTGACAGAAGAGAGTGA 0.86 3704 GCAC/1879 vvi-miR156d TGACAGAAGAGAGTGA 0.863705 GCAC/1880 vvi-miR156e TGACAGAGGAGAGTGA 0.81 3706 GCAC/1881vvi-miR156f TTGACAGAAGATAGAG 0.95 3707 AGCAC/1882 vvi-miR156gTTGACAGAAGATAGAG 0.95 3708 AGCAC/1883 vvi-miR156h TGACAGAAGAGAGAGA 0.863709 GCAT/1884 vvi-miR156i TTGACAGAAGATAGAG 0.95 3710 AGCAC/1885zel-miR156 TGACAGAAGAGAGAGA 0.9 3711 GCAC/1886 zma-miR156aTGACAGAAGAGAGTGA 0.86 3712 GCAC/1887 zma-miR156b TGACAGAAGAGAGTGA 0.863713 GCAC/1888 zma-miR156c TGACAGAAGAGAGTGA 0.86 3714 GCAC/1889zma-miR156d TGACAGAAGAGAGTGA 0.86 3715 GCAC/1890 zma-miR156eTGACAGAAGAGAGTGA 0.86 3716 GCAC/1891 zma-miR156f TGACAGAAGAGAGTGA 0.863717 GCAC/1892 zma-miR156g TGACAGAAGAGAGTGA 0.86 3718 GCAC/1893zma-miR156h TGACAGAAGAGAGTGA 0.86 3719 GCAC/1894 zma-miR156iTGACAGAAGAGAGTGA 0.86 3720 GCAC/1895 zma-miR156j TGACAGAAGAGAGAGA 0.93721 GCACA/1896 zma-miR156k TGACAGAAGAGAGCGA 0.86 3722 GCAC/1897zma-miR156l TGACAGAAGAGAGTGA 0.86 3723 GCAC/1898 zma-miR156mTGACAGAAGAGAGTGA 0.86 3724 GCAC/1899 zma-miR156n TGACAGAAGAGAGTGA 0.863725 GCAC/1900 zma-miR156o TGACAGAAGAGAGTGA 0.86 3726 GCAC/1901zma-miR156p TGACAGAAGAGAGAGA 0.9 3727 GCAC/1902 zma-miR156qTGACAGAAGAGAGAGA 0.9 3728 GCAC/1903 zma-miR156r TGACAGAAGAGAGTGG 0.813729 GCAC/1904 gma- acb-miR159 TTGGACTGAAGGGAGCT 0.81 3730 miR159a-CCCT/1905 3p aha-miR159 TTGGACTGAAGGGAGCT 0.81 3731 CCCT/1906 ahi-miR159TTGGACTGAAGGGAGCT 0.81 3732 CCCT/1907 ahy-miR159 TTTGGATTGAAGGGAGC 13733 TCTA/1908 aly-miR159a TTTGGATTGAAGGGAGC 1 3734 TCTA/1909aly-miR159b TTTGGATTGAAGGGAGC 0.95 3735 TCTT/1910 aly-miR159cTTTGGATTGAAGGGAGC 0.9 3736 TCCT/1911 ape-miR159 TTGGACTGAAGGGAGCT 0.813737 CCCT/1912 aqc-miR159 TTTGGACTGAAGGGAGC 0.95 3738 TCTA/1913ath-miR159a TTTGGATTGAAGGGAGC 1 3739 TCTA/1914 ath-miR159bTTTGGATTGAAGGGAGC 0.95 3740 TCTT/1915 ath-miR159c TTTGGATTGAAGGGAGC 0.93741 TCCT/1916 bdi-miR159 CTTGGATTGAAGGGAGC 0.9 3742 TCT/1917 bna-miR159TTTGGATTGAAGGGAGC 1 3743 TCTA/1918 bra-miR159a TTTGGATTGAAGGGAGC 1 3744TCTA/1919 bvl-miR159 TTGGACTGAAGGGAGCT 0.81 3745 CCCT/1920 cmi-miR159TTGGACTGAAGGGAGCT 0.81 3746 CCCT/1921 cor-miR159 TTGGACTGAAGGGAGCT 0.813747 CCCT/1922 crb-miR159 TTGGACTGAAGGGAGCT 0.81 3748 CCCT/1923csi-miR159 TTTGGATTGAAGGGAGC 1 3749 TCTA/1924 dso-miR159TTGGACTGAAGGGAGCT 0.81 3750 CCCT/1925 ech-miR159 TTGGACTGAAGGGAGCT 0.813751 CCCT/1926 fal-miR159 TTGGACTGAAGGGAGCT 0.81 3752 CCCT/1927far-miR159 TTTGGATTGAAGGGAGC 0.95 3753 TCTG/1928 gma-miR159bATTGGAGTGAAGGGAG 0.86 3754 CTCCA/1929 gma-miR159c ATTGGAGTGAAGGGAG 0.813755 CTCCG/1930 hvu-miR159a TTTGGATTGAAGGGAGC 0.95 3756 TCTG/1931hvu-miR159b TTTGGATTGAAGGGAGC 0.95 3757 TCTG/1932 hvv-miR159aTTTGGATTGAAGGGAGC 0.95 3758 TCTG/1933 hvv-miR159b TTTGGATTGAAGGGAGC 0.953759 TCTG/1934 ltu-miR159 TTTGGATTGAAGGGAGC 1 3760 TCTA/1935 mma-miR159TTGGACTGAAGGGAGCT 0.81 3761 CCCT/1936 mtr-miR159a TTTGGATTGAAGGGAGC 13762 TCTA/1937 mtr-miR159b ATTGAATTGAAGGGAG 0.71 3763 CAACT/1938mtr-miR159c TTTGGATTGAAGGGAGC 1 3764 TCTA/1939 nof-miR159TTGGACTGAAGGGAGCT 0.81 3765 CCCT/1940 oru-miR159 TTTGGATTGAAGGGAGC 0.953766 TCTG/1941 osa-miR159a TTTGGATTGAAGGGAGC 0.95 3767 TCTG/1942osa-miR159a.1 TTTGGATTGAAGGGAGC 0.95 3768 TCTG/1943 osa-miR159bTTTGGATTGAAGGGAGC 0.95 3769 TCTG/1944 osa-miR159c ATTGGATTGAAGGGAG 0.93770 CTCCA/1945 osa-miR159d ATTGGATTGAAGGGAG 0.86 3771 CTCCG/1946osa-miR159e ATTGGATTGAAGGGAG 0.86 3772 CTCCT/1947 osa-miR159fCTTGGATTGAAGGGAGC 0.95 3773 TCTA/1948 osa-miR159m TTTGGATTGAAGGGAGC 0.953774 TCTG/1949 pgl-miR159 TTTGGATTGAAGGGAGC 0.95 3775 TCTG/1950psi-miR159 CTTGGATTGAAGGGAGC 0.9 3776 TCCA/1951 pta-miR159aTTGGATTGAAGGGAGCT 0.9 3777 CCA/1952 pta-miR159b TTGGATTGAAGAGAGCT 0.813778 CCC/1953 pta-miR159c CTTGGATTGAAGGGAGC 0.86 3779 TCCC/1954ptc-miR159a TTTGGATTGAAGGGAGC 1 3780 TCTA/1955 ptc-miR159bTTTGGATTGAAGGGAGC 1 3781 TCTA/1956 ptc-miR159c TTTGGATTGAAGGGAGC 1 3782TCTA/1957 ptc-miR159d CTTGGATTGAAGGGAGC 0.86 3783 TCCT/1958 ptc-miR159eCTTGGGGTGAAGGGAG 0.76 3784 CTCCT/1959 ptc-miR159f ATTGGAGTGAAGGGAG 0.863785 CTCGA/1960 pvu-miR159 TTTGGATTGAAGGGAGC 1 3786 TCTA/1961pvu-miR159a.1 TTTGGATTGAAGGGAGC 1 3787 TCTA/1962 rco-miR159TTTGGATTGAAGGGAGC 1 3788 TCTA/1963 rin-miR159 TTGGACTGAAGGGAGCT 0.813789 CCCT/1964 sar-miR159 TTTGGATTGAAGGGAGC 0.95 3790 TCTG/1965sbi-miR159a TTTGGATTGAAGGGAGC 0.95 3791 TCTG/1966 sbi-miR159bCTTGGATTGAAGGGAGC 0.86 3792 TCCT/1967 sly-miR159 TTTGGATTGAAGGGAGC 13793 TCTA/1968 smo-miR159 CTTGGATTGAAGGGAGC 0.86 3794 TCCC/1969sof-miR159a TTTGGATTGAAGGGAGC 0.95 3795 TCTG/1970 sof-miR159bTTTGGATTGAAGGGAGC 0.95 3796 TCTG/1971 sof-miR159c CTTGGATTGAAGGGAGC 0.863797 TCCT/1972 sof-miR159d TTTGGATTGAAGGGAGC 0.95 3798 TCTG/1973sof-miR159e TTTGGATTGAAAGGAGC 0.9 3799 TCTT/1974 spr-miR159TTTGGATTGAAGGGAGC 0.95 3800 TCTG/1975 ssp-miR159a TTTGGATTGAAGGGAGC 0.953801 TCTG/1976 svi-miR159 TTGGACTGAAGGGAGCT 0.81 3802 CCCT/1977tae-miR159a TTTGGATTGAAGGGAGC 0.95 3803 TCTG/1978 tae-miR159bTTTGGATTGAAGGGAGC 0.95 3804 TCTG/1979 tar-miR159 TTGGACTGAAGGGAGCT 0.813805 CCCT/1980 vvi-miR159a CTTGGAGTGAAGGGAG 0.86 3806 CTCTC/1981vvi-miR159b CTTGGAGTGAAGGGAG 0.86 3807 CTCTC/1982 vvi-miR159cTTTGGATTGAAGGGAGC 1 3808 TCTA/1983 zma-miR159a TTTGGATTGAAGGGAGC 0.953809 TCTG/1984 zma-miR159b TTTGGATTGAAGGGAGC 0.95 3810 TCTG/1985zma-miR159c CTTGGATTGAAGGGAGC 0.86 3811 TCCT/1986 zma-miR159dCTTGGATTGAAGGGAGC 0.86 3812 TCCT/1987 zma-miR159e ATTGGTTTGAAGGGAGC 0.863813 TCCA/1988 zma-miR159f TTTGGATTGAAGGGAGC 0.95 3814 TCTG/1989zma-miR159g TTTGGAGTGAAGGGAGT 0.86 3815 TCTG/1990 zma-miR159hTTTGGAGTGAAGGGAG 0.9 3816 CTCTG/1991 zma-miR159i TTTGGAGTGAAGGGAG 0.93817 CTCTG/1992 zma-miR159j TTTGGATTGAAGGGAGC 0.95 3818 TCTG/1993zma-miR159k TTTGGATTGAAGGGAGC 0.95 3819 TCTG/1994 zma-miR159mTTTGGATTGAAGGGAGC 0.95 3820 TCTG/1995 sbi- acb-miR159 TTGGACTGAAGGGAGCT0.81 3821 miR159a CCCT/1996 aha-miR159 TTGGACTGAAGGGAGCT 0.81 3822CCCT/1997 ahi-miR159 TTGGACTGAAGGGAGCT 0.81 3823 CCCT/1998 ahy-miR159TTTGGATTGAAGGGAGC 0.95 3824 TCTA/1999 aly-miR159a TTTGGATTGAAGGGAGC 0.953825 TCTA/2000 aly-miR159b TTTGGATTGAAGGGAGC 0.95 3826 TCTT/2001aly-miR159c TTTGGATTGAAGGGAGC 0.9 3827 TCCT/2002 ape-miR159TTGGACTGAAGGGAGCT 0.81 3828 CCCT/2003 aqc-miR159 TTTGGACTGAAGGGAGC 0.93829 TCTA/2004 ath-miR159a TTTGGATTGAAGGGAGC 0.95 3830 TCTA/2005ath-miR159b TTTGGATTGAAGGGAGC 0.95 3831 TCTT/2006 ath-miR159cTTTGGATTGAAGGGAGC 0.9 3832 TCCT/2007 bdi-miR159 CTTGGATTGAAGGGAGC 0.93833 TCT/2008 bna-miR159 TTTGGATTGAAGGGAGC 0.95 3834 TCTA/2009bra-miR159a TTTGGATTGAAGGGAGC 0.95 3835 TCTA/2010 bvl-miR159TTGGACTGAAGGGAGCT 0.81 3836 CCCT/2011 cmi-miR159 TTGGACTGAAGGGAGCT 0.813837 CCCT/2012 cor-miR159 TTGGACTGAAGGGAGCT 0.81 3838 CCCT/2013crb-miR159 TTGGACTGAAGGGAGCT 0.81 3839 CCCT/2014 csi-miR159TTTGGATTGAAGGGAGC 0.95 3840 TCTA/2015 dso-miR159 TTGGACTGAAGGGAGCT 0.813841 CCCT/2016 ech-miR159 TTGGACTGAAGGGAGCT 0.81 3842 CCCT/2017fal-miR159 TTGGACTGAAGGGAGCT 0.81 3843 CCCT/2018 far-miR159TTTGGATTGAAGGGAGC 1 3844 TCTG/2019 gma-miR159a-3p TTTGGATTGAAGGGAGC 0.953845 TCTA/2020 gma-miR159b ATTGGAGTGAAGGGAG 0.81 3846 CTCCA/2021gma-miR159c ATTGGAGTGAAGGGAG 0.86 3847 CTCCG/2022 hvu-miR159aTTTGGATTGAAGGGAGC 1 3848 TCTG/2023 hvu-miR159b TTTGGATTGAAGGGAGC 1 3849TCTG/2024 hvv-miR159a TTTGGATTGAAGGGAGC 1 3850 TCTG/2025 hvv-miR159bTTTGGATTGAAGGGAGC 1 3851 TCTG/2026 ltu-miR159 TTTGGATTGAAGGGAGC 0.953852 TCTA/2027 mma-miR159 TTGGACTGAAGGGAGCT 0.81 3853 CCCT/2028mtr-miR159a TTTGGATTGAAGGGAGC 0.95 3854 TCTA/2029 mtr-miR159bATTGAATTGAAGGGAG 0.71 3855 CAACT/2030 mtr-miR159c TTTGGATTGAAGGGAGC 0.953856 TCTA/2031 nof-miR159 TTGGACTGAAGGGAGCT 0.81 3857 CCCT/2032oru-miR159 TTTGGATTGAAGGGAGC 1 3858 TCTG/2033 osa-miR159aTTTGGATTGAAGGGAGC 1 3859 TCTG/2034 osa-miR159a.1 TTTGGATTGAAGGGAGC 13860 TCTG/2035 osa-miR159b TTTGGATTGAAGGGAGC 1 3861 TCTG/2036osa-miR159c ATTGGATTGAAGGGAG 0.86 3862 CTCCA/2037 osa-miR159dATTGGATTGAAGGGAG 0.9 3863 CTCCG/2038 osa-miR159e ATTGGATTGAAGGGAG 0.863864 CTCCT/2039 osa-miR159f CTTGGATTGAAGGGAGC 0.9 3865 TCTA/2040osa-miR159m TTTGGATTGAAGGGAGC 1 3866 TCTG/2041 pgl-miR159TTTGGATTGAAGGGAGC 1 3867 TCTG/2042 psi-miR159 CTTGGATTGAAGGGAGC 0.863868 TCCA/2043 pta-miR159a TTGGATTGAAGGGAGCT 0.86 3869 CCA/2044pta-miR159b TTGGATTGAAGAGAGCT 0.81 3870 CCC/2045 pta-miR159cCTTGGATTGAAGGGAGC 0.86 3871 TCCC/2046 ptc-miR159a TTTGGATTGAAGGGAGC 0.953872 TCTA/2047 ptc-miR159b TTTGGATTGAAGGGAGC 0.95 3873 TCTA/2048ptc-miR159c TTTGGATTGAAGGGAGC 0.95 3874 TCTA/2049 ptc-miR159dCTTGGATTGAAGGGAGC 0.86 3875 TCCT/2050 ptc-miR159e CTTGGGGTGAAGGGAG 0.763876 CTCCT/2051 ptc-miR159f ATTGGAGTGAAGGGAG 0.81 3877 CTCGA/2052pvu-miR159 TTTGGATTGAAGGGAGC 0.95 3878 TCTA/2053 pvu-miR159a.1TTTGGATTGAAGGGAGC 0.95 3879 TCTA/2054 rco-miR159 TTTGGATTGAAGGGAGC 0.953880 TCTA/2055 rin-miR159 TTGGACTGAAGGGAGCT 0.81 3881 CCCT/2056sar-miR159 TTTGGATTGAAGGGAGC 1 3882 TCTG/2057 sbi-miR159bCTTGGATTGAAGGGAGC 0.86 3883 TCCT/2058 sly-miR159 TTTGGATTGAAGGGAGC 0.953884 TCTA/2059 smo-miR159 CTTGGATTGAAGGGAGC 0.86 3885 TCCC/2060sof-miR159a TTTGGATTGAAGGGAGC 1 3886 TCTG/2061 sof-miR159bTTTGGATTGAAGGGAGC 1 3887 TCTG/2062 sof-miR159c CTTGGATTGAAGGGAGC 0.863888 TCCT/2063 sof-miR159d TTTGGATTGAAGGGAGC 1 3889 TCTG/2064sof-miR159e TTTGGATTGAAAGGAGC 0.9 3890 TCTT/2065 spr-miR159TTTGGATTGAAGGGAGC 1 3891 TCTG/2066 ssp-miR159a TTTGGATTGAAGGGAGC 1 3892TCTG/2067 svi-miR159 TTGGACTGAAGGGAGCT 0.81 3893 CCCT/2068 tae-miR159aTTTGGATTGAAGGGAGC 1 3894 TCTG/2069 tae-miR159b TTTGGATTGAAGGGAGC 1 3895TCTG/2070 tar-miR159 TTGGACTGAAGGGAGCT 0.81 3896 CCCT/2071 vvi-miR159aCTTGGAGTGAAGGGAG 0.86 3897 CTCTC/2072 vvi-miR159b CTTGGAGTGAAGGGAG 0.863898 CTCTC/2073 vvi-miR159c TTTGGATTGAAGGGAGC 0.95 3899 TCTA/2074zma-miR159a TTTGGATTGAAGGGAGC 1 3900 TCTG/2075 zma-miR159bTTTGGATTGAAGGGAGC 1 3901 TCTG/2076 zma-miR159c CTTGGATTGAAGGGAGC 0.863902 TCCT/2077 zma-miR159d CTTGGATTGAAGGGAGC 0.86 3903 TCCT/2078zma-miR159e ATTGGTTTGAAGGGAGC 0.81 3904 TCCA/2079 zma-miR159fTTTGGATTGAAGGGAGC 1 3905 TCTG/2080 zma-miR159g TTTGGAGTGAAGGGAGT 0.93906 TCTG/2081 zma-miR159h TTTGGAGTGAAGGGAG 0.95 3907 CTCTG/2082zma-miR159i TTTGGAGTGAAGGGAG 0.95 3908 CTCTG/2083 zma-miR159jTTTGGATTGAAGGGAGC 1 3909 TCTG/2084 zma-miR159k TTTGGATTGAAGGGAGC 1 3910TCTG/2085 zma-miR159m TTTGGATTGAAGGGAGC 1 3911 TCTG/2086

TABLE 8 Summary of Homologs/Orthologs to Small RNAs which are down-regulated in Abiotic Stress in Soybean Plants. Homolog %Homolog Stem-loop Mir Name Name Homolog Sequence Identity Sequencealy-miR396a- aly- GCTCAAGAAAGCTGTGGGAAA/3953 0.86 5117 3p miR396b-3pcsi-miR396c TTCAAGAAATCTGTGGGAAG/3954 0.86 5118 gma-AAGAAAGCTGTGGGAGAATATGGC/3955 0.67 5119 miR396d osa-GTTCAAGAAAGCCCATGGAAA/3956 0.71 5120 miR396e* osa-ATGGTTCAAGAAAGCCCATGGAAA/3957 0.71 5121 miR396e-3p osa-GTTCAAGAAAGTCCTTGGAAA/3958 0.71 5122 miR396f* osa-ATAGTTCAAGAAAGTCCTTGGAAA/3959 0.71 5123 miR396f-3p zma-GTTCAATAAAGCTGTGGGAAA/3960 0.95 5124 miR396a* zma-GTTCAATAAAGCTGTGGGAAA/3961 0.95 5125 miR396b-3p zma-GGTCAAGAAAGCCGTGGGAAG/3962 0.86 5126 miR396e* zma-GGTCAAGAAAGCTGTGGGAAG/3963 0.9 5127 miR396f* zma-GTTCAAGAAAGCTGTGGAAGA/3964 0.81 5128 miR396g* aly-miR396b- aly-GTTCAATAAAGCTGTGGGAAG/3965 0.86 5129 3p miR396a-3p csi-miR396cTTCAAGAAATCTGTGGGAAG/3966 0.81 5130 gma- AAGAAAGCTGTGGGAGAATATGGC/39670.76 5131 miR396d osa- GTTCAAGAAAGCCCATGGAAA/3968 0.76 5132 miR396e*osa- ATGGTTCAAGAAAGCCCATGGAAA/3969 0.76 5133 miR396e-3p osa-GTTCAAGAAAGTCCTTGGAAA/3970 0.76 5134 miR396f* osa-ATAGTTCAAGAAAGTCCTTGGAAA/3971 0.76 5135 miR396f-3p zma-GTTCAATAAAGCTGTGGGAAA/3972 0.9 5136 miR396a* zma-GTTCAATAAAGCTGTGGGAAA/3973 0.9 5137 miR396b-3p zma-GGTCAAGAAAGCCGTGGGAAG/3974 0.86 5138 miR396e* zma-GGTCAAGAAAGCTGTGGGAAG/3975 0.9 5139 miR396f* zma-GTTCAAGAAAGCTGTGGAAGA/3976 0.86 5140 miR396g* ath- aly-CCCGCCTTGCATCAACTGAAT/3977 0.95 5141 miRf10239- miR168a* akr bna- aly-TAATCTGCATCCTGAGGTTTA/3978 1 5142 miR2111b-5p miR2111a aly-TAATCTGCATCCTGAGGTTTA/3979 1 5143 miR2111b ath-TAATCTGCATCCTGAGGTTTA/3980 1 5144 miR2111a ath-TAATCTGCATCCTGAGGTTTA/3981 1 5145 miR2111b bna-TAATCTGCATCCTGAGGTTTA/3982 1 5146 miR2111a bra-TAATCTGCATCCTGAGGTTTA/3983 1 5147 miR2111a bra-TAATCTGCATCCTGAGGTTTA/3984 1 5148 miR2111b lja-miR2111TAATCTGCATCCTGAGGTTTA/3985 1 5149 mtr- TAATCTGCATCCTGAGGTTTA/3986 1 5150miR2111a mtr- TAATCTGCATCCTGAGGTTTA/3987 1 5151 miR2111b mtr-TAATCTGCATCCTGAGGTTTA/3988 1 5152 miR2111c mtr-TAATCTGCATCCTGAGGTTTA/3989 1 5153 miR2111d mtr-TAATCTGCATCCTGAGGTTTA/3990 1 5154 miR2111e mtr-TAATCTGCATCCTGAGGTTTA/3991 1 5155 miR2111f mtr-TAATCTGCATCCTGAGGTTTA/3992 1 5156 miR2111h mtr-TAATCTGCATCCTGAGGTTTA/3993 1 5157 miR2111i mtr-TAATCTGCATCCTGAGGTTTA/3994 1 5158 miR2111j mtr-TAATCTGCATCCTGAGGTTTA/3995 1 5159 miR2111k mtr-TAATCTGCATCCTGAGGTTTA/3996 1 5160 miR2111l mtr-TAATCTGCATCCTGAGGTTTA/3997 1 5161 miR2111m mtr-TAATCTGCATCCTGAGGTTTA/3998 1 5162 miR2111n mtr-TAATCTGCATCCTGAGGTTTA/3999 1 5163 miR2111o mtr-TAATCTGCATCCTGAGGTTTA/4000 1 5164 miR2111p mtr-TAATCTGCATCCTGAGGTTTA/4001 1 5165 miR2111q mtr-TAATCTGCATCCTGAGGTTTA/4002 1 5166 miR2111r mtr-TAATCTGCATCCTGAGGTTTA/4003 1 5167 miR2111s tcc-miR2111TAATCTGCATCCTGAGGTTTA/4004 1 5168 vvi- TAATCTGCATCCTGAGGTCTA/4005 0.955169 miR2111-5p csi-miR162- aly- GGAGGCAGCGGTTCATCGATC/4006 0.95 5170 5pmiR162a* aly- GGAGGCAGCGGTTCATCGATC/4007 0.95 5171 miR162b* zma-GGGCGCAGTGGTTTATCGATC/4008 0.77 5172 miR162* gma-miR396d aly-GCTCAAGAAAGCTGTGGGAAA/4009 0.67 5173 miR396b-3p zma-GTTCAATAAAGCTGTGGGAAA/4010 0.63 5174 miR396a* zma-GTTCAATAAAGCTGTGGGAAA/4011 0.63 5175 miR396b-3p zma-GGTCAAGAAAGCTGTGGGAAG/4012 0.63 5176 miR396f* zma-GTTCAAGAAAGCTGTGGAAGA/4013 0.67 5177 miR396g* gma- aqc-miR482aTCTTGCCGACTCCTCCCATACC/4014 0.71 5178 miR482a-3p aqc-TCTTGCCGACTCCTCCCATACC/4015 0.71 5179 miR482b aqc-miR482cTCTTGCCGACTCCTCCCATACC/4016 0.71 5180 csi-miR482aTCTTCCCTATGCCTCCCATTCC/4017 0.79 5181 csi-miR482bTCTTGCCCACCCCTCCCATTCC/4018 0.71 5182 csi-miR482cTTCCCTAGTCCCCCTATTCCTA/4019 0.75 5183 ghr-miR482aTCTTTCCTACTCCTCCCATACC/4020 0.71 5184 ghr-miR482bTCTTGCCTACTCCACCCATGCC/4021 0.71 5185 gma-miR482TCTTCCCAATTCCGCCCATTCCTA/4022 1 5186 gra-miR482TCTTTCCAATTCCTCCCATTCC/4023 0.83 5187 gso-miR482aTCTTCCCTACACCTCCCATAC/4024 0.67 5188 gso- TCTTCCCTACACCTCCCATAC/40250.67 5189 miR482b mdm- TCTTCCCAAGCCCGCCCATTCC/4026 0.83 5190 miR482mdo-miR482 TCTTCCCAAGCCCGCCCATTCC/4027 0.83 5191 pab-TCTTCCCTACTCCTCCCATTCC/4028 0.79 5192 miR482a pab-TCTTCCCTATTCCTCCCATTCC/4029 0.83 5193 miR482b pab-TCTTTCCTACTCCTCCCATTCC/4030 0.75 5194 miR482c pta-miR482aTCTTCCCTACTCCTCCCATTCC/4031 0.79 5195 pta-miR482bTCTTCCCTACTCCTCCCATTCC/4032 0.79 5196 pta-miR482cTCTTCCCTATTCCTCCCATT/4033 0.75 5197 pta-miR482dTCCTCCCTACTCCTCCCATT/4034 0.67 5198 ptc- TCTTGCCTACTCCTCCCATT/4035 0.675199 miR482.2 pvu-miR482 TCTTCCCAATTCCGCCCATTCC/4036 0.92 5200sly-miR482 TTTCCAATTCCACCCATTCCTA/4037 0.83 5201 vvi-miR482TCTTTCCTACTCCTCCCATTCC/4038 0.75 5202 zma-miR482TCTTCCTTGTTCCTCCCATT/4039 0.67 5203 gma- pvu-GGAATGGGCTGATTGGGAAGCA/4040 0.73 5204 miR482b-5p miR482* gso- aly-GGCAAGTTGTCCTTGGCTACA/4041 0.85 5205 miR169g* miR169a* aly-GGCAAGTTGTCCTTCGGCTACA/4042 0.85 5206 miR169b* aly-GGCAAGTCATCTCTGGCTATG/4043 0.65 5207 miR169c* aly-GCAAGTTGACCTTGGCTCTGT/4044 0.8 5208 miR169d* aly-GCAAGTTGACCTTGGCTCTGT/4045 0.8 5209 miR169e* aly-GCAAGTTGACCTTGGCTCTGC/4046 0.8 5210 miR169f* aly-GCAAGTTGACCTTGGCTCTGT/4047 0.8 5211 miR169g* aly-miR169hTAGCCAAGGATGACTTGCCTG/4048 0.65 5212 aly- GGCAGTCTCCTTGGCTATT/4049 0.655213 miR169h* aly-miR169i TAGCCAAGGATGACTTGCCTG/4050 0.65 5214 aly-GGCAGTCTCCTTGGATATC/4051 0.6 5215 miR169i* aly-miR169jTAGCCAAGGATGACTTGCCTG/4052 0.65 5216 aly- GGCAGTCTCCTTGGCTATC/4053 0.655217 miR169j* aly-miR169k TAGCCAAGGATGACTTGCCTG/4054 0.65 5218 aly-GGCAGTCTCCTTGGCTATC/4055 0.65 5219 miR169k* aly-miR169lTAGCCAAGGATGACTTGCCTG/4056 0.65 5220 aly- GGCAGTCTCCTTGGCTATC/4057 0.655221 miR169l* aly- TAGCCAAGGATGACTTGCCTG/4058 0.65 5222 miR169m aly-GGCAGTCTTCTTGGCTATC/4059 0.6 5223 miR169m* aly-miR169nTAGCCAAAGATGACTTGCCTG/4060 0.6 5224 aly- GGCAGTCTCTTTGGCTATC/4061 0.65225 miR169n* aqc-miR169a TAGCCAAGGATGACTTGCCTA/4062 0.65 5226 aqc-TAGCCAAGGATGACTTGCCTG/4063 0.65 5227 miR169b ath-TCCGGCAAGTTGACCTTGGCT/4064 0.9 5228 miR169g* ath-miR169hTAGCCAAGGATGACTTGCCTG/4065 0.65 5229 ath-miR169iTAGCCAAGGATGACTTGCCTG/4066 0.65 5230 ath-miR169jTAGCCAAGGATGACTTGCCTG/4067 0.65 5231 ath-miR169kTAGCCAAGGATGACTTGCCTG/4068 0.65 5232 ath-miR169lTAGCCAAGGATGACTTGCCTG/4069 0.65 5233 ath- TAGCCAAGGATGACTTGCCTG/40700.65 5234 miR169m ath-miR169n TAGCCAAGGATGACTTGCCTG/4071 0.65 5235bdi-miR169b TAGCCAAGGATGACTTGCCGG/4072 0.6 5236 bdi-miR169dTAGCCAAGAATGACTTGCCTA/4073 0.65 5237 bdi-miR169eTAGCCAAGGATGACTTGCCTG/4074 0.65 5238 bdi-miR169gTAGCCAAGGATGACTTGCCTG/4075 0.65 5239 bdi-miR169hTAGCCAAGGATGACTTGCCTA/4076 0.65 5240 bdi-miR169iCCAGCCAAGAATGGCTTGCCTA/4077 0.6 5241 bdi-miR169jTAGCCAGGAATGGCTTGCCTA/4078 0.6 5242 bdi-miR169kTAGCCAAGGATGATTTGCCTGT/4079 0.6 5243 bna- TAGCCAAGGATGACTTGCCTA/40800.65 5244 miR169c bna- TAGCCAAGGATGACTTGCCTA/4081 0.65 5245 miR169d bna-TAGCCAAGGATGACTTGCCTA/4082 0.65 5246 miR169e bna-miR169fTAGCCAAGGATGACTTGCCTA/4083 0.65 5247 bna- TAGCCAAGGATGACTTGCCTGC/40840.65 5248 miR169g bna- TAGCCAAGGATGACTTGCCTGC/4085 0.65 5249 miR169hbna-miR169i TAGCCAAGGATGACTTGCCTGC/4086 0.65 5250 bna-miR169jTAGCCAAGGATGACTTGCCTGC/4087 0.65 5251 bna- TAGCCAAGGATGACTTGCCTGC/40880.65 5252 miR169k bna-miR169l TAGCCAAGGATGACTTGCCTGC/4089 0.65 5253far-miR169 TAGCCAAGGATGACTTGCCTA/4090 0.65 5254 ghb-TAGCCAAGGATGACTTGCCTG/4091 0.65 5255 miR169a ghr-miR169ACGCCAAGGATGTCTTGCGTC/4092 0.6 5256 mtr-miR169fAAGCCAAGGATGACTTGCCTA/4093 0.6 5257 osa-miR169eTAGCCAAGGATGACTTGCCGG/4094 0.6 5258 osa-miR169fTAGCCAAGGATGACTTGCCTA/4095 0.65 5259 osa-miR169gTAGCCAAGGATGACTTGCCTA/4096 0.65 5260 osa-miR169hTAGCCAAGGATGACTTGCCTG/4097 0.65 5261 osa-miR169iTAGCCAAGGATGACTTGCCTG/4098 0.65 5262 osa-miR169jTAGCCAAGGATGACTTGCCTG/4099 0.65 5263 osa-miR169kTAGCCAAGGATGACTTGCCTG/4100 0.65 5264 osa-miR169lTAGCCAAGGATGACTTGCCTG/4101 0.65 5265 osa- TAGCCAAGGATGACTTGCCTG/41020.65 5266 miR169m osa-miR169n TAGCCAAGAATGACTTGCCTA/4103 0.65 5267osa-miR169o TAGCCAAGAATGACTTGCCTA/4104 0.65 5268 ptc-TAGCCAAGGACGACTTGCCCA/4105 0.6 5269 miR169ab ptc-TAGCCAAGGACGACTTGCCCA/4106 0.6 5270 miR169ac ptc-TAGCCAAGGACGACTTGCCCA/4107 0.6 5271 miR169ad ptc-TAGCCAAGGACGACTTGCCCA/4108 0.6 5272 miR169ae ptc-TAGCCAAGGACGACTTGCCCA/4109 0.6 5273 miR169af ptc-miR169iTAGCCAAGGATGACTTGCCTG/4110 0.65 5274 ptc-miR169jTAGCCAAGGATGACTTGCCTG/4111 0.65 5275 ptc-miR169kTAGCCAAGGATGACTTGCCTG/4112 0.65 5276 ptc-miR169lTAGCCAAGGATGACTTGCCTG/4113 0.65 5277 ptc- TAGCCAAGGATGACTTGCCTG/41140.65 5278 miR169m ptc-miR169o AAGCCAAGGATGACTTGCCTG/4115 0.6 5279ptc-miR169p AAGCCAAGGATGACTTGCCTG/4116 0.6 5280 ptc-miR169qTAGCCAAGGACGACTTGCCTG/4117 0.65 5281 ptc-miR169rTAGCCAAGGATGACTTGCCTA/4118 0.65 5282 ptc-miR169sTCAGCCAAGGATGACTTGCCG/4119 0.65 5283 ptc-miR169uTAGCCAAGGACGACTTGCCTA/4120 0.65 5284 ptc-miR169vTAGCCAAGGATGACTTGCCCA/4121 0.6 5285 ptc- TAGCCAAGGATGACTTGCCCA/4122 0.65286 miR169w sbi-miR169c TAGCCAAGGATGACTTGCCTA/4123 0.65 5287sbi-miR169d TAGCCAAGGATGACTTGCCTA/4124 0.65 5288 sbi-miR169eTAGCCAAGGATGACTTGCCGG/4125 0.6 5289 sbi-miR169fTAGCCAAGGATGACTTGCCTG/4126 0.65 5290 sbi-miR169gTAGCCAAGGATGACTTGCCTG/4127 0.65 5291 sbi-miR169hTAGCCAAGGATGACTTGCCTA/4128 0.65 5292 sbi-miR169iTAGCCAAGAATGACTTGCCTA/4129 0.65 5293 sbi-miR169jTAGCCAAGGATGACTTGCCGG/4130 0.6 5294 sbi-miR169lTAGCCAAGGATGACTTGCCTG/4131 0.65 5295 sbi- TAGCCAAGGATGACTTGCCTA/41320.65 5296 miR169m sbi-miR169n TAGCCAAGGATGACTTGCCTA/4133 0.65 5297sbi-miR169o TAGCCAAGGATGATTTGCCTG/4134 0.6 5298 sbi-miR169pTAGCCAAGAATGGCTTGCCTA/4135 0.65 5299 sbi-miR169qTAGCCAAGAATGGCTTGCCTA/4136 0.65 5300 sly-miR169bTAGCCAAGGATGACTTGCCTG/4137 0.65 5301 sly-miR169dTAGCCAAGGATGACTTGCCTA/4138 0.65 5302 sof-miR169TAGCCAAGGATGACTTGCCGG/4139 0.6 5303 ssp-miR169TAGCCAAGGATGACTTGCCGG/4140 0.6 5304 tcc-miR169dTAGCCAAGGATGACTTGCCTA/4141 0.65 5305 tcc-miR169fAAGCCAAGAATGACTTGCCTG/4142 0.6 5306 tcc-miR169gTAGCCAGGGATGACTTGCCTA/4143 0.6 5307 tcc-miR169hTAGCCAAGGATGACTTGCCTG/4144 0.65 5308 tcc-miR169iTAGCCAAGGATGAGTTGCCTG/4145 0.6 5309 tcc-miR169jTAGCCAAGGATGACTTGCCTG/4146 0.65 5310 vvi-miR169eTAGCCAAGGATGACTTGCCTGC/4147 0.65 5311 vvi-miR169xTAGCCAAGGATGACTTGCCTA/4148 0.65 5312 vvi-miR169yTAGCGAAGGATGACTTGCCTA/4149 0.6 5313 zma- GGCAAGTTGTTCTTGGCTACA/4150 0.85314 miR169a* zma- GGCAAGTTGTTCTTGGCTACA/4151 0.8 5315 miR169b* zma-GGCAAGTCTGTCCTTGGCTACA/4152 0.85 5316 miR169c* zma-TAGCCAAGGATGACTTGCCTA/4153 0.65 5317 miR169f zma-GGCATGTCTTCCTTGGCTACT/4154 0.7 5318 miR169f* zma-TAGCCAAGGATGACTTGCCTA/4155 0.65 5319 miR169g zma-TAGCCAAGGATGACTTGCCTA/4156 0.65 5320 miR169h zma-TAGCCAAGGATGACTTGCCTG/4157 0.65 5321 miR169i zma-GGCAGTCTCCTTGGCTAG/4158 0.65 5322 miR169i* zma-TAGCCAAGGATGACTTGCCTG/4159 0.65 5323 miR169j zma-GGCAGTCTCCTTGGCTAG/4160 0.65 5324 miR169j* zma-TAGCCAAGGATGACTTGCCTG/4161 0.65 5325 miR169k zma-GGCAGTCTCCTTGGCTAG/4162 0.65 5326 miR169k* zma-TAGCCAAGAATGGCTTGCCTA/4163 0.65 5327 miR169m zma-TAGCCAAGAATGGCTTGCCTA/4164 0.65 5328 miR169n zma-GGCAGGCCTTCTTGGCTAAG/4165 0.6 5329 miR169n* zma-TAGCCAAGAATGACTTGCCTA/4166 0.65 5330 miR169o zma-GGCAGGTCTTCTTGGCTAGC/4167 0.65 5331 miR169o* zma-TAGCCAAGGATGACTTGCCGG/4168 0.6 5332 miR169p zma-GGCAAGTCATCTGGGGCTACG/4169 0.6 5333 miR169p* zma-TAGCCAAGAATGGCTTGCCTA/4170 0.65 5334 miR169q zma-GGCAAGTTGTCCTTGGCTACA/4171 0.85 5335 miR169r* ppt-miR533b- ppt-GAGCTGGCCAGGCTGTGAGGG/4172 0.95 5336 5p miR533a* ptc- aly-TAATCTGCATCCTGAGGTTTA/4173 0.95 5337 miRf11953- miR2111a akr aly-TAATCTGCATCCTGAGGTTTA/4174 0.95 5338 miR2111b ath-TAATCTGCATCCTGAGGTTTA/4175 0.95 5339 miR2111a ath-TAATCTGCATCCTGAGGTTTA/4176 0.95 5340 miR2111b bna-TAATCTGCATCCTGAGGTTTA/4177 0.95 5341 miR2111a bna-TAATCTGCATCCTGAGGTTTA/4178 0.95 5342 miR2111b- 5p bra-TAATCTGCATCCTGAGGTTTA/4179 0.95 5343 miR2111a bra-TAATCTGCATCCTGAGGTTTA/4180 0.95 5344 miR2111b lja-miR2111TAATCTGCATCCTGAGGTTTA/4181 0.95 5345 mtr- TAATCTGCATCCTGAGGTTTA/41820.95 5346 miR2111a mtr- TAATCTGCATCCTGAGGTTTA/4183 0.95 5347 miR2111bmtr- TAATCTGCATCCTGAGGTTTA/4184 0.95 5348 miR2111c mtr-TAATCTGCATCCTGAGGTTTA/4185 0.95 5349 miR2111d mtr-TAATCTGCATCCTGAGGTTTA/4186 0.95 5350 miR2111e mtr-TAATCTGCATCCTGAGGTTTA/4187 0.95 5351 miR2111f mtr-TAATCTGCATCCTGAGGTTTA/4188 0.95 5352 miR2111h mtr-TAATCTGCATCCTGAGGTTTA/4189 0.95 5353 miR2111i mtr-TAATCTGCATCCTGAGGTTTA/4190 0.95 5354 miR2111j mtr-TAATCTGCATCCTGAGGTTTA/4191 0.95 5355 miR2111k mtr-TAATCTGCATCCTGAGGTTTA/4192 0.95 5356 miR2111l mtr-TAATCTGCATCCTGAGGTTTA/4193 0.95 5357 miR2111m mtr-TAATCTGCATCCTGAGGTTTA/4194 0.95 5358 miR2111n mtr-TAATCTGCATCCTGAGGTTTA/4195 0.95 5359 miR2111o mtr-TAATCTGCATCCTGAGGTTTA/4196 0.95 5360 miR2111p mtr-TAATCTGCATCCTGAGGTTTA/4197 0.95 5361 miR2111q mtr-TAATCTGCATCCTGAGGTTTA/4198 0.95 5362 miR2111r mtr-TAATCTGCATCCTGAGGTTTA/4199 0.95 5363 miR2111s tcc-miR2111TAATCTGCATCCTGAGGTTTA/4200 0.95 5364 vvi- TAATCTGCATCCTGAGGTCTA/4201 0.95365 miR2111-5p vvi-miR2111- aly- TAATCTGCATCCTGAGGTTTA/4202 0.95 53665p miR2111a aly- TAATCTGCATCCTGAGGTTTA/4203 0.95 5367 miR2111b ath-TAATCTGCATCCTGAGGTTTA/4204 0.95 5368 miR2111a ath-TAATCTGCATCCTGAGGTTTA/4205 0.95 5369 miR2111b bna-TAATCTGCATCCTGAGGTTTA/4206 0.95 5370 miR2111a bna-TAATCTGCATCCTGAGGTTTA/4207 0.95 5371 miR2111b- 5p bra-TAATCTGCATCCTGAGGTTTA/4208 0.95 5372 miR2111a bra-TAATCTGCATCCTGAGGTTTA/4209 0.95 5373 miR2111b lja-miR2111TAATCTGCATCCTGAGGTTTA/4210 0.95 5374 mtr- TAATCTGCATCCTGAGGTTTA/42110.95 5375 miR2111a mtr- TAATCTGCATCCTGAGGTTTA/4212 0.95 5376 miR2111bmtr- TAATCTGCATCCTGAGGTTTA/4213 0.95 5377 miR2111c mtr-TAATCTGCATCCTGAGGTTTA/4214 0.95 5378 miR2111d mtr-TAATCTGCATCCTGAGGTTTA/4215 0.95 5379 miR2111e mtr-TAATCTGCATCCTGAGGTTTA/4216 0.95 5380 miR2111f mtr-TAATCTGCATCCTGAGGTTTA/4217 0.95 5381 miR2111h mtr-TAATCTGCATCCTGAGGTTTA/4218 0.95 5382 miR2111i mtr-TAATCTGCATCCTGAGGTTTA/4219 0.95 5383 miR2111j mtr-TAATCTGCATCCTGAGGTTTA/4220 0.95 5384 miR2111k mtr-TAATCTGCATCCTGAGGTTTA/4221 0.95 5385 miR2111l mtr-TAATCTGCATCCTGAGGTTTA/4222 0.95 5386 miR2111m mtr-TAATCTGCATCCTGAGGTTTA/4223 0.95 5387 miR2111n mtr-TAATCTGCATCCTGAGGTTTA/4224 0.95 5388 miR2111o mtr-TAATCTGCATCCTGAGGTTTA/4225 0.95 5389 miR2111p mtr-TAATCTGCATCCTGAGGTTTA/4226 0.95 5390 miR2111q mtr-TAATCTGCATCCTGAGGTTTA/4227 0.95 5391 miR2111r mtr-TAATCTGCATCCTGAGGTTTA/4228 0.95 5392 miR2111s tcc-miR2111TAATCTGCATCCTGAGGTTTA/4229 0.95 5393 zma- aly-GTTCAATAAAGCTGTGGGAAG/4230 0.95 5394 miR396b-3p miR396a-3p aly-GCTCAAGAAAGCTGTGGGAAA/4231 0.9 5395 miR396b-3p csi-miR396cTTCAAGAAATCTGTGGGAAG/4232 0.81 5396 gma- AAGAAAGCTGTGGGAGAATATGGC/42330.71 5397 miR396d osa- GTTCAAGAAAGCCCATGGAAA/4234 0.76 5398 miR396e*osa- ATGGTTCAAGAAAGCCCATGGAAA/4235 0.76 5399 miR396e-3p osa-GTTCAAGAAAGTCCTTGGAAA/4236 0.76 5400 miR396f* osa-ATAGTTCAAGAAAGTCCTTGGAAA/4237 0.76 5401 miR396f-3p zma-GTTCAATAAAGCTGTGGGAAA/4238 1 5402 miR396a* zma-GGTCAAGAAAGCCGTGGGAAG/4239 0.81 5403 miR396e* zma-GGTCAAGAAAGCTGTGGGAAG/4240 0.86 5404 miR396f* zma-GTTCAAGAAAGCTGTGGAAGA/4241 0.86 5405 miR396g* ctr-miR171 aly-miR171aTGATTGAGCCGCGCCAATATC/4242 0.81 5406 aly-miR171bTTGAGCCGTGCCAATATCACG/4243 0.81 5407 aly-miR171cTTGAGCCGTGCCAATATCACG/4244 0.81 5408 aqc-miR171aTGATTGAGCCGTGCCAATATC/4245 0.76 5409 aqc- TGATTGAGCCGTGCCAATATC/42460.76 5410 miR171b aqc-miR171c TAATTGAACCGCACTAATATC/4247 0.67 5411 aqc-TGATTGAGCCGTGCCAATATC/4248 0.76 5412 miR171d aqc-miR171eTGAATGAACCGAGCCAACATC/4249 0.62 5413 aqc-miR171fTAATTGAGCCGTGCCAATATC/4250 0.76 5414 ath-miR171aTGATTGAGCCGCGCCAATATC/4251 0.81 5415 ath-miR171bTTGAGCCGTGCCAATATCACG/4252 0.81 5416 ath-miR171cTTGAGCCGTGCCAATATCACG/4253 0.81 5417 bdi-miR171aTGATTGAGCCGCGCCAATATC/4254 0.81 5418 bdi-miR171bTGATTGAGCCGTGCCAATATC/4255 0.76 5419 bdi-miR171cTGATTGAGCCGTGCCAATATC/4256 0.76 5420 bdi-miR171dTGATTGAGCCGTGCCAATATC/4257 0.76 5421 bna- TTGAGCCGTGCCAATATCACG/42580.81 5422 miR171a bna- TTGAGCCGTGCCAATATCACG/4259 0.81 5423 miR171b bna-TTGAGCCGTGCCAATATCACG/4260 0.81 5424 miR171c bna-TTGAGCCGTGCCAATATCACG/4261 0.81 5425 miR171d bna-TTGAGCCGTGCCAATATCACG/4262 0.81 5426 miR171e bna-miR171fTGATTGAGCCGCGCCAATATC/4263 0.81 5427 bna- TGATTGAGCCGCGCCAATATCT/42640.86 5428 miR171g bol-miR171a TTGAGCCGTGCCAATATCACG/4265 0.81 5429bra-miR171a TTGAGCCGTGCCAATATCACG/4266 0.81 5430 bra-miR171bTTGAGCCGTGCCAATATCACG/4267 0.81 5431 bra-miR171cTTGAGCCGTGCCAATATCACG/4268 0.81 5432 bra-miR171dTTGAGCCGTGCCAATATCACG/4269 0.81 5433 bra-miR171eTGATTGAGCCGCGCCAATATC/4270 0.81 5434 ccl-miR171TGATTGAGCCGCGCCAATATC/4271 0.81 5435 crt-miR171TGATTGAGCCGTGCCAATATC/4272 0.76 5436 csi-miR171aTTGAGCCGCGCCAATATCAC/4273 0.86 5437 csi-miR171bCGAGCCGAATCAATATCACTC/4274 0.71 5438 ctr-miR171TTGAGCCGCGTCAATATCTCC/4275 1 5439 far-miR171 TGATTGAGCCGTGCCAATATC/42760.76 5440 gma- TGAGCCGTGCCAATATCACGA/4277 0.76 5441 miR171a gma-CGAGCCGAATCAATATCACTC/4278 0.71 5442 miR171b-3p hvu-miR171TGATTGAGCCGTGCCAATATC/4279 0.76 5443 mtr-miR171TGATTGAGTCGTGCCAATATC/4280 0.71 5444 mtr- TGATTGAGCCGCGTCAATATC/42810.86 5445 miR171b mtr-miR171c TGATTGAGCCGTGCCAATATT/4282 0.71 5446 mtr-TGATTGAGCCGTGCCAATATC/4283 0.76 5447 miR171d mtr-miR171eAGATTGAGCCGCGCCAATATC/4284 0.81 5448 mtr-miR171fTTGAGCCGTGCCAATATCACG/4285 0.81 5449 mtr- TGATTGAGCCGTGCCAATATC/42860.76 5450 miR171g osa-miR171a TGATTGAGCCGCGCCAATATC/4287 0.81 5451osa-miR171b TGATTGAGCCGTGCCAATATC/4288 0.76 5452 osa-miR171cTGATTGAGCCGTGCCAATATC/4289 0.76 5453 osa-miR171dTGATTGAGCCGTGCCAATATC/4290 0.76 5454 osa-miR171eTGATTGAGCCGTGCCAATATC/4291 0.76 5455 osa-miR171fTGATTGAGCCGTGCCAATATC/4292 0.76 5456 osa-miR171gGAGGTGAGCCGAGCCAATATC/4293 0.71 5457 osa-miR171hGTGAGCCGAACCAATATCACT/4294 0.71 5458 osa-miR171iGGATTGAGCCGCGTCAATATC/4295 0.86 5459 ppt-miR171aTGAGCCGCGCCAATATCACAT/4296 0.81 5460 ppt-miR171bTTGAGCCGCGCCAATATCACA/4297 0.86 5461 pta-miR171TGATTGAGACGAGTCCATATC/4298 0.71 5462 ptc-miR171aTTGAGCCGTGCCAATATCACG/4299 0.81 5463 ptc-miR171bTTGAGCCGTGCCAATATCACG/4300 0.81 5464 ptc-miR171cAGATTGAGCCGCGCCAATATC/4301 0.81 5465 ptc-miR171dAGATTGAGCCGCGCCAATATC/4302 0.81 5466 ptc-miR171eTGATTGAGCCGTGCCAATATC/4303 0.76 5467 ptc-miR171fTGATTGAGCCGTGCCAATATC/4304 0.76 5468 ptc-miR171gTGATTGAGCCGTGCCAATATC/4305 0.76 5469 ptc-miR171hTGATTGAGCCGTGCCAATATC/4306 0.76 5470 ptc-miR171iTGATTGAGCCGTGCCAATATC/4307 0.76 5471 ptc-miR171jGGATTGAGCCGCGCCAATACT/4308 0.71 5472 ptc-miR171kGGATTGAGCCGCGCCAATATC/4309 0.81 5473 ptc-miR171lCGAGCCGAATCAATATCACT/4310 0.71 5474 ptc- CGAGCCGAATCAATATCACT/4311 0.715475 miR171m ptc-miR171n CGAGCCGAATCAATATCACT/4312 0.71 5476 rco-miR171aTTGAGCCGTGCCAATATCACG/4313 0.81 5477 rco-miR171bTTGAGCCGTGCCAATATCACG/4314 0.81 5478 rco-miR171cTGATTGAGCCGTGCCAATATC/4315 0.76 5479 rco-miR171dTGATTGAGCCGTGCCAATATC/4316 0.76 5480 rco-miR171eTGATTGAGCCGTGCCAATATC/4317 0.76 5481 rco-miR171fTGATTGAGCCGTGCCAATATC/4318 0.76 5482 rco-miR171gAGATTGAGCCGCGCCAATATC/4319 0.81 5483 sbi-miR171aTGATTGAGCCGTGCCAATATC/4320 0.76 5484 sbi-miR171bTGATTGAGCCGTGCCAATATC/4321 0.76 5485 sbi-miR171cGAGGTGAGCCGAGCCAATATC/4322 0.71 5486 sbi-miR171dTGATTGAGCCGTGCCAATATC/4323 0.76 5487 sbi-miR171eGTGAGCCGAACCAATATCACT/4324 0.71 5488 sbi-miR171fATGAGCCGAACCAATATCACT/4325 0.71 5489 sbi-miR171gTGATTGAGCCGCGCCAATATC/4326 0.81 5490 sbi-miR171hGGATTGAGCCGCGTCAATATC/4327 0.86 5491 sbi-miR171iTGATTGAGCCGTGCCAATATC/4328 0.76 5492 sbi-miR171jTGATTGAGCCGCGCCAATATC/4329 0.81 5493 sbi-miR171kTGATTGAGCCGTGCCAATATC/4330 0.76 5494 sly-miR171aTGATTGAGCCGTGCCAATATC/4331 0.76 5495 sly-miR171bTTGAGCCGTGCCAATATCACG/4332 0.81 5496 sly-miR171dTTGAGCCGCGCCAATATCAC/4333 0.86 5497 smo- TTGAGCCGTGCCAATATCACT/4334 0.815498 miR171a smo- TGAGCCGTGCCAATATCACAT/4335 0.76 5499 miR171b smo-TTGAGTCGCGCCAATATCATG/4336 0.76 5500 miR171c smo-TGAGCCGCGCCAATATCACAT/4337 0.81 5501 miR171d tae-miR171aTGATTGAGCCGTGCCAATATC/4338 0.76 5502 tae-miR171bTTGAGCCGTGCCAATATCACG/4339 0.81 5503 tcc-miR171aTGATTGAGCCGCGCCAATATC/4340 0.81 5504 tcc-miR171bAGATTGAGCCGCGCCAATATC/4341 0.81 5505 tcc-miR171cAGATTGAGCCGCGCCAATATC/4342 0.81 5506 tcc-miR171dTGATTGAGCCGTGCCAATATC/4343 0.76 5507 tcc-miR171eTGATTGAGCCGTGCCAATATC/4344 0.76 5508 tcc-miR171fTGATTGAGCCGTGCCAATATC/4345 0.76 5509 tcc-miR171gTGATTGAGCCGTGCCAATATC/4346 0.76 5510 tcc-miR171hTGATTGAGCCGTGCCAATATC/4347 0.76 5511 vvi-miR171aTGATTGAGCCGTGCCAATATC/4348 0.76 5512 vvi-miR171bTGATTGAGCCGCGTCAATATC/4349 0.86 5513 vvi-miR171cTGATTGAGCCGTGCCAATATC/4350 0.76 5514 vvi-miR171dTGATTGAGCCGTGCCAATATC/4351 0.76 5515 vvi-miR171eTGATTGAGCCGCGCCAATATC/4352 0.81 5516 vvi-miR171fTTGAGCCGCGCCAATATCACT/4353 0.86 5517 vvi-miR171gTTGAGCCGAACCAATATCACC/4354 0.81 5518 vvi-miR171hTGGTTGAGCCGCGCCAATATC/4355 0.81 5519 vvi-miR171iTGATTGAGCCGTGCCAATATC/4356 0.76 5520 zma- TGATTGAGCCGCGCCAATAT/4357 0.765521 miR171a zma- TTGAGCCGTGCCAATATCAC/4358 0.81 5522 miR171b zma-TGACTGAGCCGTGCCAATATC/4359 0.71 5523 miR171c zma-TGATTGAGCCGTGCCAATATC/4360 0.76 5524 miR171d zma-TGATTGAGCCGTGCCAATATC/4361 0.76 5525 miR171e zma-TTGAGCCGTGCCAATATCACA/4362 0.81 5526 miR171f zma-GAGGTGAGCCGAGCCAATATC/4363 0.71 5527 miR171g zma-GTGAGCCGAACCAATATCACT/4364 0.71 5528 miR171h zma-TGATTGAGCCGTGCCAATATC/4365 0.76 5529 miR171i zma-TGATTGAGCCGTGCCAATATC/4366 0.76 5530 miR171j zma-GTGAGCCGAACCAATATCACT/4367 0.71 5531 miR171k zma-GGATTGAGCCGCGTCAATATC/4368 0.86 5532 miR171l zma-GGATTGAGCCGCGTCAATATC/4369 0.86 5533 miR171m zma-TGATTGAGCCGCGCCAATATC/4370 0.81 5534 miR171n aly-miR160c- ahy-miR160-GCATGAAGGGAGTCACGCAGG/4371 0.67 5535 3p 3p aly-GCGTATGAGGAGCCATGCATA/4372 0.81 5536 miR160a* aly-GCGTACAGAGTAGTCAAGCATG/4373 0.86 5537 miR160b* bra-GCGTATGAGGAGCCATGCATA/4374 0.81 5538 miR160a-3p zma-GCGTGCAAGGGGCCAAGCATG/4375 0.9 5539 miR160a* zma-GCGTGCAAGGAGCCAAGCATG/4376 0.95 5540 miR160b* zma-GCGTGCATGGTGCCAAGCATA/4377 0.81 5541 miR160c* zma-GCGTGCGTGGAGCCAAGCATG/4378 0.86 5542 miR160d* zma-GCGTGCGAGGTGCCAGGCATG/4379 0.81 5543 miR160f* zma-GCGTGCAAGGAGCCAAGCATG/4380 0.95 5544 miR160g* bra-miR160a- aly-GCGTATGAGGAGCCATGCATA/4381 1 5545 3p miR160a* aly-GCGTACAGAGTAGTCAAGCATG/4382 0.76 5546 miR160b* aly-GCGTACAAGGAGCCAAGCATG/4383 0.81 5547 miR160c-3p zma-GCGTGCAAGGGGCCAAGCATG/4384 0.71 5548 miR160a* zma-GCGTGCAAGGAGCCAAGCATG/4385 0.76 5549 miR160b* zma-GCGTGCATGGTGCCAAGCATA/4386 0.71 5550 miR160c* zma-GCGTGCGTGGAGCCAAGCATG/4387 0.76 5551 miR160d* zma-GCGTGCGAGGTGCCAGGCATG/4388 0.76 5552 miR160f* zma-GCGTGCAAGGAGCCAAGCATG/4389 0.76 5553 miR160g* gma- ahy-CCTCGTTCCATACATCATCTA/4390 0.77 5554 miR1507a miR1507 gma-TCTCATTCCATACATCGTCTG/4391 0.95 5555 miR1507b gso-TCTCATTCCATACATCGTCTGA/4392 1 5556 miR1507a gso-TCTCATTCCATACATCGTCTGA/4393 1 5557 miR1507b mtr-CCTCGTTCCATACATCATCTAG/4394 0.77 5558 miR1507 vun-TCTCATTCCATACATCGTCTG/4395 0.95 5559 miR1507a vun-TCTCATTCCATACATCGTCTG/4396 0.95 5560 miR1507b gma- gma-AAGTGATGACATGACAAGCGAAGT/4397 0.75 5561 miR4371b miR4371a gso-miR482aaqc-miR482a TCTTGCCGACTCCTCCCATACC/4398 0.86 5562 aqc-TCTTGCCGACTCCTCCCATACC/4399 0.86 5563 miR482b aqc-miR482cTCTTGCCGACTCCTCCCATACC/4400 0.86 5564 csi-miR482aTCTTCCCTATGCCTCCCATTCC/4401 0.86 5565 csi-miR482bTCTTGCCCACCCCTCCCATTCC/4402 0.81 5566 csi-miR482cTTCCCTAGTCCCCCTATTCCTA/4403 0.67 5567 ghr-miR482aTCTTTCCTACTCCTCCCATACC/4404 0.9 5568 ghr-miR482bTCTTGCCTACTCCACCCATGCC/4405 0.81 5569 gma-miR482TCTTCCCAATTCCGCCCATTCCTA/4406 0.76 5570 gma-TCTTCCCAATTCCGCCCATTCCTA/4407 0.76 5571 miR482a-3p gra-miR482TCTTTCCAATTCCTCCCATTCC/4408 0.76 5572 gso- TCTTCCCTACACCTCCCATAC/4409 15573 miR482b mdm- TCTTCCCAAGCCCGCCCATTCC/4410 0.76 5574 miR482mdo-miR482 TCTTCCCAAGCCCGCCCATTCC/4411 0.76 5575 pab-TCTTCCCTACTCCTCCCATTCC/4412 0.9 5576 miR482a pab-TCTTCCCTATTCCTCCCATTCC/4413 0.86 5577 miR482b pab-TCTTTCCTACTCCTCCCATTCC/4414 0.86 5578 miR482c pta-miR482aTCTTCCCTACTCCTCCCATTCC/4415 0.9 5579 pta-miR482bTCTTCCCTACTCCTCCCATTCC/4416 0.9 5580 pta-miR482cTCTTCCCTATTCCTCCCATT/4417 0.81 5581 pta-miR482dTCCTCCCTACTCCTCCCATT/4418 0.81 5582 ptc- CCTACTCCTCCCATTCC/4419 0.675583 miR482.1 ptc- TCTTGCCTACTCCTCCCATT/4420 0.81 5584 miR482.2pvu-miR482 TCTTCCCAATTCCGCCCATTCC/4421 0.76 5585 sly-miR482TTTCCAATTCCACCCATTCCTA/4422 0.62 5586 vvi-miR482TCTTTCCTACTCCTCCCATTCC/4423 0.86 5587 zma-miR482TCTTCCTTGTTCCTCCCATT/4424 0.71 5588 osa- osa- AGTGAGGAGGCCGGGGCCGCT/44250.75 5589 miR1846e miR1846a- 5p osa- AGTGAGGAGGCCGGGGCCGCT/4426 0.755590 miR1846b- 5p osa- AGTGAGGAGGCCGGGGCCGCT/4427 0.75 5591 miR1846c- 5pppt-miR166m aly-miR166a TCGGACCAGGCTTCATTCCCC/4428 0.86 5592 aly-miR166bTCGGACCAGGCTTCATTCCCC/4429 0.86 5593 aly-miR166cTCGGACCAGGCTTCATTCCCC/4430 0.86 5594 aly-miR166dTCGGACCAGGCTTCATTCCCC/4431 0.86 5595 aly-miR166eTCGGACCAGGCTTCATTCCCC/4432 0.86 5596 aly-miR166fTCGGACCAGGCTTCATTCCCC/4433 0.86 5597 aly-miR166gTCGGACCAGGCTTCATTCCCC/4434 0.86 5598 aqc-miR166aTCGGACCAGGCTTCATTCCTC/4435 0.9 5599 aqc- TCGGACCAGGCTTCATTCCCC/4436 0.865600 miR166b aqc-miR166c TCGGACCAGGCTTCATTCCT/4437 0.9 5601 aqc-TCGGACCAGGCTTCATTCCTC/4438 0.9 5602 miR166d aqc-miR166eTCGGACCAGGCTTCATTCCCC/4439 0.86 5603 ath-miR166aTCGGACCAGGCTTCATTCCCC/4440 0.86 5604 ath-miR166bTCGGACCAGGCTTCATTCCCC/4441 0.86 5605 ath-miR166cTCGGACCAGGCTTCATTCCCC/4442 0.86 5606 ath-miR166dTCGGACCAGGCTTCATTCCCC/4443 0.86 5607 ath-miR166eTCGGACCAGGCTTCATTCCCC/4444 0.86 5608 ath-miR166fTCGGACCAGGCTTCATTCCCC/4445 0.86 5609 ath-miR166gTCGGACCAGGCTTCATTCCCC/4446 0.86 5610 bdi-miR166TCGGACCAGGCTTCATTCCCC/4447 0.86 5611 bdi-miR166aTCGGACCAGGCTTCATTCCCC/4448 0.86 5612 bdi-miR166bTCGGACCAGGCTTCATTCCCC/4449 0.86 5613 bdi-miR166cTCGGACCAGGCTTCATTCCCC/4450 0.86 5614 bdi-miR166dTCGGACCAGGCTTCATTCCCC/4451 0.86 5615 bdi-miR166eCTCGGACCAGGCTTCATTCCC/4452 0.86 5616 bdi-miR166fTCTCGGACCAGGCTTCATTCC/4453 0.86 5617 bna- TCGGACCAGGCTTCATTCCCC/44540.86 5618 miR166a bna- TCGGACCAGGCTTCATTCCCC/4455 0.86 5619 miR166b bna-TCGGACCAGGCTTCATTCCCC/4456 0.86 5620 miR166c bna-TCGGACCAGGCTTCATTCCCC/4457 0.86 5621 miR166d cpt-miR166TCGGACCAGGCTTCATTCCC/4458 0.86 5622 crt-miR166aTCGGACCAGGCTTCATTCCCGT/4459 0.86 5623 crt-miR166bTCGGACCAGGCTTCATTCCCTT/4460 0.9 5624 csi-miR166TCGGACCAGGCTTCATTCCCC/4461 0.86 5625 csi-miR166aTCGGACCAGGCTTCATTCCCCC/4462 0.86 5626 csi-miR166bTCGGACCAGGCTTCATTCCCGT/4463 0.86 5627 csi-miR166cTCGGACCAGGCTTCATTCCC/4464 0.86 5628 csi-miR166dTCGGACCAGGCTTCATTCCCT/4465 0.9 5629 csi-miR166eTCGGACCAGGCTTCATTCCCC/4466 0.86 5630 ctr-miR166TCGGACCAGGCTTCATTCCCCC/4467 0.86 5631 far-miR166CCGGACCAGGCTTCATCCCAG/4468 0.76 5632 flm-miR166TCGGACCAGGCTTCATCCCCC/4469 0.81 5633 ghr-miR166aTCGGACCAGGCTTCATTCCCC/4470 0.86 5634 ghr-miR166bTCGGACCAGGCTTCATTCCCC/4471 0.86 5635 gma- TCGGACCAGGCTTCATTCCCC/44720.86 5636 miR166a gma- TCGGACCAGGCTTCATTCCCC/4473 0.86 5637 miR166b gma-TCGGACCAGGCTTCATTCCCC/4474 0.86 5638 miR166n gma-TCGGACCAGGCTTCATTCCCC/4475 0.86 5639 miR166o gma-TCGGACCAGGCTTCATTCCCG/4476 0.86 5640 miR166q gma-TCGGACCAGGCTTCATTCCCT/4477 0.9 5641 miR166r hvu-miR166TCGGACCAGGCTTCATTCCCC/4478 0.86 5642 hvu- TCGGACCAGGCTTCATTCCCC/44790.86 5643 miR166b hvu- TCGGACCAGGCTTCATTCCCC/4480 0.86 5644 miR166chvv-miR166 TCGGACCAGGCTTCATTCCCC/4481 0.86 5645 ini-miR166TCGGACCAGGCTTCATTCCTC/4482 0.9 5646 mtr-miR166TCGGACCAGGCTTCATTCCCC/4483 0.86 5647 mtr- TCGGACCAGGCTTCATTCCTA/4484/0.9 5648 miR166b TCGGACCAGGCTTCATTCCCC/5115 mtr-miR166cTCGGACCAGGCTTCATTCCTC/4485 0.9 5649 mtr- TCGGGCCAGGCTTCATCCCCC/4486 0.765650 miR166d mtr-miR166e TCGGACCAGGCTTCATTCCCC/4487 0.86 5651mtr-miR166f TCGGACCAGGCTTCATTCCTC/4488 0.9 5652 mtr-TCGGACCAGGCTTCATTCCCC/4489 0.86 5653 miR166g mtr-TCGGACCAGGCTTCATTCCCC/4490 0.86 5654 miR166h nsy-miR166TCGGACCAGGCTTCATTCCCC/4491 0.86 5655 osa-miR166aTCGGACCAGGCTTCATTCCCC/4492 0.86 5656 osa-miR166bTCGGACCAGGCTTCATTCCCC/4493 0.86 5657 osa-miR166cTCGGACCAGGCTTCATTCCCC/4494 0.86 5658 osa-miR166dTCGGACCAGGCTTCATTCCCC/4495 0.86 5659 osa-miR166eTCGAACCAGGCTTCATTCCCC/4496 0.81 5660 osa-miR166fTCGGACCAGGCTTCATTCCCC/4497 0.86 5661 osa-miR166gTCGGACCAGGCTTCATTCCTC/4498 0.9 5662 osa-miR166hTCGGACCAGGCTTCATTCCTC/4499 0.9 5663 osa-miR166iTCGGATCAGGCTTCATTCCTC/4500 0.86 5664 osa-miR166jTCGGATCAGGCTTCATTCCTC/4501 0.86 5665 osa-miR166kTCGGACCAGGCTTCAATCCCT/4502 0.86 5666 osa-miR166lTCGGACCAGGCTTCAATCCCT/4503 0.86 5667 osa- TCGGACCAGGCTTCATTCCCT/4504 0.95668 miR166m osa-miR166n TCGGACCAGGCTTCATTCCCC/4505 0.86 5669 pab-TCGGACCAGGCTTCATTCCTC/4506 0.9 5670 miR166a pab-TCGGACCAGGCTTCATTCCTT/4507 0.95 5671 miR166b pga-miR166TCGGACCAGGCTTCATTCCTT/4508 0.95 5672 ppt-miR166aTCGGACCAGGCTTCATTCCCC/4509 0.86 5673 ppt-miR166bTCGGACCAGGCTTCATTCCCC/4510 0.86 5674 ppt-miR166cTCGGACCAGGCTTCATTCCCC/4511 0.86 5675 ppt-miR166dTCGGACCAGGCTTCATTCCCC/4512 0.86 5676 ppt-miR166eTCGGACCAGGCTTCATTCCCC/4513 0.86 5677 ppt-miR166fTCGGACCAGGCTTCATTCCCC/4514 0.86 5678 ppt-miR166gTCGGACCAGGCTTCATTCCCC/4515 0.86 5679 ppt-miR166hTCGGACCAGGCTTCATTCCCC/4516 0.86 5680 ppt-miR166iTCGGACCAGGCTTCATTCCCC/4517 0.86 5681 ppt-miR166jTCCGGACCAGGCTTCATTCCC/4518 0.81 5682 ppt-miR166kTCCGGACCAGGCTTCATTCCC/4519 0.81 5683 ppt-miR166lTCCGGACCAGGCTTCATTCCC/4520 0.81 5684 pta-miR166aTCGGACCAGGCTTCATTCCCC/4521 0.86 5685 pta-miR166bTCGGACCAGGCTTCATTCCCC/4522 0.86 5686 pta-miR166cCCGGACCAGGCTTCATCCCAG/4523 0.76 5687 ptc-miR166aTCGGACCAGGCTTCATTCCCC/4524 0.86 5688 ptc-miR166bTCGGACCAGGCTTCATTCCCC/4525 0.86 5689 ptc-miR166cTCGGACCAGGCTTCATTCCCC/4526 0.86 5690 ptc-miR166dTCGGACCAGGCTTCATTCCCC/4527 0.86 5691 ptc-miR166eTCGGACCAGGCTTCATTCCCC/4528 0.86 5692 ptc-miR166fTCGGACCAGGCTTCATTCCCC/4529 0.86 5693 ptc-miR166gTCGGACCAGGCTTCATTCCCC/4530 0.86 5694 ptc-miR166hTCGGACCAGGCTTCATTCCCC/4531 0.86 5695 ptc-miR166iTCGGACCAGGCTTCATTCCCC/4532 0.86 5696 ptc-miR166jTCGGACCAGGCTTCATTCCCC/4533 0.86 5697 ptc-miR166kTCGGACCAGGCTTCATTCCCC/4534 0.86 5698 ptc-miR166lTCGGACCAGGCTTCATTCCCC/4535 0.86 5699 ptc- TCGGACCAGGCTTCATTCCCC/45360.86 5700 miR166m ptc-miR166n TCGGACCAGGCTTCATTCCTT/4537 0.95 5701ptc-miR166o TCGGACCAGGCTTCATTCCTT/4538 0.95 5702 ptc-miR166pTCGGACCAGGCTCCATTCCTT/4539 0.9 5703 ptc-miR166qTCGGACCAGGCTTCATTCCTT/4540 0.95 5704 pvu-miR166TCGGACCAGGCTTCATTCCCC/4541 0.86 5705 pvu- TCGGACCAGGCTTCATTCCCC/45420.86 5706 miR166a rco-miR166a TCGGACCAGGCTTCATTCCCC/4543 0.86 5707rco-miR166b TCGGACCAGGCTTCATTCCCC/4544 0.86 5708 rco-miR166cTCGGACCAGGCTTCATTCCCC/4545 0.86 5709 rco-miR166dTCGGACCAGGCTTCATTCCCC/4546 0.86 5710 rco-miR166eTCGGACCAGGCTTCATTCCCC/4547 0.86 5711 sbi-miR166aTCGGACCAGGCTTCATTCCC/4548 0.86 5712 sbi-miR166bTCGGACCAGGCTTCATTCCC/4549 0.86 5713 sbi-miR166cTCGGACCAGGCTTCATTCCC/4550 0.86 5714 sbi-miR166dTCGGACCAGGCTTCATTCCC/4551 0.86 5715 sbi-miR166eTCGGACCAGGCTTCAATCCCT/4552 0.86 5716 sbi-miR166fTCGGACCAGGCTTCATTCCTC/4553 0.9 5717 sbi-miR166gTCGGACCAGGCTTCAATCCCT/4554 0.86 5718 sbi-miR166hTCGGACCAGGCTTCATTCCC/4555 0.86 5719 sbi-miR166iTCGGACCAGGCTTCATTCCC/4556 0.86 5720 sbi-miR166jTCGGACCAGGCTTCATTCCC/4557 0.86 5721 sbi-miR166kTCGGACCAGGCTTCATTCCT/4558 0.9 5722 sly-miR166aTCGGACCAGGCTTCATTCCCC/4559 0.86 5723 sly-miR166bTCGGACCAGGCTTCATTCCCC/4560 0.86 5724 smo- TCGGACCAGGCTTCATTCCCC/45610.86 5725 miR166a smo- TCGGACCAGGCTTCATTCCCC/4562 0.86 5726 miR166b smo-TCGGACCAGGCTTCATTCCCC/4563 0.86 5727 miR166c sof-miR166TCGGACCAGGCTTCATTCCCC/4564 0.86 5728 tae-miR166CCGGACCAGGCTTCATTCCCA/4565 0.81 5729 tcc-miR166aTCGGACCAGGCTTCATTCCCC/4566 0.86 5730 tcc-miR166bTCGGACCAGGCTTCATTCCC/4567 0.86 5731 tcc-miR166cTCGGACCAGGCTTCATTCCTC/4568 0.9 5732 tcc-miR166dTCGGACCAGGCTTCATTCCCC/4569 0.86 5733 vvi-miR166aTCGGACCAGGCTTCATTCC/4570 0.86 5734 vvi-miR166b TCGGACCAGGCTTCATTCC/45710.86 5735 vvi-miR166c TCGGACCAGGCTTCATTCCCC/4572 0.86 5736 vvi-miR166dTCGGACCAGGCTTCATTCCCC/4573 0.86 5737 vvi-miR166eTCGGACCAGGCTTCATTCCCC/4574 0.86 5738 vvi-miR166fTCGGACCAGGCTTCATTCCCC/4575 0.86 5739 vvi-miR166gTCGGACCAGGCTTCATTCCCC/4576 0.86 5740 vvi-miR166hTCGGACCAGGCTTCATTCCCC/4577 0.86 5741 zma- TCGGACCAGGCTTCATTCCCC/45780.86 5742 miR166a zma- TCGGACCAGGCTTCATTCCC/4579 0.86 5743 miR166b zma-TCGGACCAGGCTTCATTCCC/4580 0.86 5744 miR166c zma-TCGGACCAGGCTTCATTCCC/4581 0.86 5745 miR166d zma-TCGGACCAGGCTTCATTCCC/4582 0.86 5746 miR166e zma-TCGGACCAGGCTTCATTCCC/4583 0.86 5747 miR166f zma-TCGGACCAGGCTTCATTCCC/4584 0.86 5748 miR166g zma-TCGGACCAGGCTTCATTCCC/4585 0.86 5749 miR166h zma-TCGGACCAGGCTTCATTCCC/4586 0.86 5750 miR166i zma-TCGGACCAGGCTTCAATCCCT/4587 0.86 5751 miR166j zma-TCGGACCAGGCTTCAATCCCT/4588 0.86 5752 miR166k zma-TCGGACCAGGCTTCATTCCTC/4589 0.9 5753 miR166l zma-TCGGACCAGGCTTCATTCCTC/4590 0.9 5754 miR166m zma-TCGGACCAGGCTTCAATCCCT/4591 0.86 5755 miR166n zma-TCGGACCAGGCTTCATTCCCC/4592 0.86 5756 miR166o zma-TCGGACCAGGCTTCATTCCCC/4593 0.86 5757 miR166p zma-TCGGACCAGGCTTCATTCCCC/4594 0.86 5758 miR166q zma-TCGGACCAGGCTTCATTCCCC/4595 0.86 5759 miR166r zma-TCGGACCAGGCTTCATTCCCC/4596 0.86 5760 miR166s zma-TCGGACCAGGCTTCATTCCCC/4597 0.86 5761 miR166t zma-TCGGACCACGCTTCATTCCCC/4598 0.81 5762 miR166u pta-miR166c aly-miR166aTCGGACCAGGCTTCATTCCCC/4599 0.81 5763 aly-miR166bTCGGACCAGGCTTCATTCCCC/4600 0.81 5764 aly-miR166cTCGGACCAGGCTTCATTCCCC/4601 0.81 5765 aly-miR166dTCGGACCAGGCTTCATTCCCC/4602 0.81 5766 aly-miR166eTCGGACCAGGCTTCATTCCCC/4603 0.81 5767 aly-miR166fTCGGACCAGGCTTCATTCCCC/4604 0.81 5768 aly-miR166gTCGGACCAGGCTTCATTCCCC/4605 0.81 5769 aqc-miR166aTCGGACCAGGCTTCATTCCTC/4606 0.81 5770 aqc- TCGGACCAGGCTTCATTCCCC/46070.81 5771 miR166b aqc-miR166c TCGGACCAGGCTTCATTCCT/4608 0.81 5772 aqc-TCGGACCAGGCTTCATTCCTC/4609 0.81 5773 miR166d aqc-miR166eTCGGACCAGGCTTCATTCCCC/4610 0.81 5774 ath-miR166aTCGGACCAGGCTTCATTCCCC/4611 0.81 5775 ath-miR166bTCGGACCAGGCTTCATTCCCC/4612 0.81 5776 ath-miR166cTCGGACCAGGCTTCATTCCCC/4613 0.81 5777 ath-miR166dTCGGACCAGGCTTCATTCCCC/4614 0.81 5778 ath-miR166eTCGGACCAGGCTTCATTCCCC/4615 0.81 5779 ath-miR166fTCGGACCAGGCTTCATTCCCC/4616 0.81 5780 ath-miR166gTCGGACCAGGCTTCATTCCCC/4617 0.81 5781 bdi-miR166TCGGACCAGGCTTCATTCCCC/4618 0.81 5782 bdi-miR166aTCGGACCAGGCTTCATTCCCC/4619 0.81 5783 bdi-miR166bTCGGACCAGGCTTCATTCCCC/4620 0.81 5784 bdi-miR166cTCGGACCAGGCTTCATTCCCC/4621 0.81 5785 bdi-miR166dTCGGACCAGGCTTCATTCCCC/4622 0.81 5786 bdi-miR166eCTCGGACCAGGCTTCATTCCC/4623 0.81 5787 bdi-miR166fTCTCGGACCAGGCTTCATTCC/4624 0.81 5788 bna- TCGGACCAGGCTTCATTCCCC/46250.81 5789 miR166a bna- TCGGACCAGGCTTCATTCCCC/4626 0.81 5790 miR166b bna-TCGGACCAGGCTTCATTCCCC/4627 0.81 5791 miR166c bna-TCGGACCAGGCTTCATTCCCC/4628 0.81 5792 miR166d cpt-miR166TCGGACCAGGCTTCATTCCC/4629 0.81 5793 crt-miR166aTCGGACCAGGCTTCATTCCCGT/4630 0.86 5794 crt-miR166bTCGGACCAGGCTTCATTCCCTT/4631 0.81 5795 csi-miR166TCGGACCAGGCTTCATTCCCC/4632 0.81 5796 csi-miR166aTCGGACCAGGCTTCATTCCCCC/4633 0.81 5797 csi-miR166bTCGGACCAGGCTTCATTCCCGT/4634 0.86 5798 csi-miR166cTCGGACCAGGCTTCATTCCC/4635 0.81 5799 csi-miR166dTCGGACCAGGCTTCATTCCCT/4636 0.81 5800 csi-miR166eTCGGACCAGGCTTCATTCCCC/4637 0.81 5801 ctr-miR166TCGGACCAGGCTTCATTCCCCC/4638 0.81 5802 far-miR166CCGGACCAGGCTTCATCCCAG/4639 1 5803 flm-miR166 TCGGACCAGGCTTCATCCCCC/46400.86 5804 ghr-miR166a TCGGACCAGGCTTCATTCCCC/4641 0.81 5805 ghr-miR166bTCGGACCAGGCTTCATTCCCC/4642 0.81 5806 gma- TCGGACCAGGCTTCATTCCCC/46430.81 5807 miR166a gma- TCGGACCAGGCTTCATTCCCC/4644 0.81 5808 miR166b gma-TCGGACCAGGCTTCATTCCCC/4645 0.81 5809 miR166n gma-TCGGACCAGGCTTCATTCCCC/4646 0.81 5810 miR166o gma-TCGGACCAGGCTTCATTCCCG/4647 0.86 5811 miR166q gma-TCGGACCAGGCTTCATTCCCT/4648 0.81 5812 miR166r hvu-miR166TCGGACCAGGCTTCATTCCCC/4649 0.81 5813 hvu- TCGGACCAGGCTTCATTCCCC/46500.81 5814 miR166b hvu- TCGGACCAGGCTTCATTCCCC/4651 0.81 5815 miR166chvv-miR166 TCGGACCAGGCTTCATTCCCC/4652 0.81 5816 ini-miR166TCGGACCAGGCTTCATTCCTC/4653 0.81 5817 mtr-miR166TCGGACCAGGCTTCATTCCCC/4654 0.81 5818 mtr- TCGGACCAGGCTTCATTCCTA/46550.81 5819 miR166b mtr-miR166c TCGGACCAGGCTTCATTCCTC/4656 0.81 5820 mtr-TCGGGCCAGGCTTCATCCCCC/4657 0.81 5821 miR166d mtr-miR166eTCGGACCAGGCTTCATTCCCC/4658 0.81 5822 mtr-miR166fTCGGACCAGGCTTCATTCCTC/4659 0.81 5823 mtr- TCGGACCAGGCTTCATTCCCC/46600.81 5824 miR166g mtr- TCGGACCAGGCTTCATTCCCC/4661 0.81 5825 miR166hnsy-miR166 TCGGACCAGGCTTCATTCCCC/4662 0.81 5826 osa-miR166aTCGGACCAGGCTTCATTCCCC/4663 0.81 5827 osa-miR166bTCGGACCAGGCTTCATTCCCC/4664 0.81 5828 osa-miR166cTCGGACCAGGCTTCATTCCCC/4665 0.81 5829 osa-miR166dTCGGACCAGGCTTCATTCCCC/4666 0.81 5830 osa-miR166eTCGAACCAGGCTTCATTCCCC/4667 0.76 5831 osa-miR166fTCGGACCAGGCTTCATTCCCC/4668 0.81 5832 osa-miR166gTCGGACCAGGCTTCATTCCTC/4669 0.81 5833 osa-miR166hTCGGACCAGGCTTCATTCCTC/4670 0.81 5834 osa-miR166iTCGGATCAGGCTTCATTCCTC/4671 0.76 5835 osa-miR166jTCGGATCAGGCTTCATTCCTC/4672 0.76 5836 osa-miR166kTCGGACCAGGCTTCAATCCCT/4673 0.76 5837 osa-miR166lTCGGACCAGGCTTCAATCCCT/4674 0.76 5838 osa- TCGGACCAGGCTTCATTCCCT/46750.81 5839 miR166m osa-miR166n TCGGACCAGGCTTCATTCCCC/4676 0.81 5840 pab-TCGGACCAGGCTTCATTCCTC/4677 0.81 5841 miR166a pab-TCGGACCAGGCTTCATTCCTT/4678 0.81 5842 miR166b pga-miR166TCGGACCAGGCTTCATTCCTT/4679 0.81 5843 ppt-miR166aTCGGACCAGGCTTCATTCCCC/4680 0.81 5844 ppt-miR166bTCGGACCAGGCTTCATTCCCC/4681 0.81 5845 ppt-miR166cTCGGACCAGGCTTCATTCCCC/4682 0.81 5846 ppt-miR166dTCGGACCAGGCTTCATTCCCC/4683 0.81 5847 ppt-miR166eTCGGACCAGGCTTCATTCCCC/4684 0.81 5848 ppt-miR166fTCGGACCAGGCTTCATTCCCC/4685 0.81 5849 ppt-miR166gTCGGACCAGGCTTCATTCCCC/4686 0.81 5850 ppt-miR166hTCGGACCAGGCTTCATTCCCC/4687 0.81 5851 ppt-miR166iTCGGACCAGGCTTCATTCCCC/4688 0.81 5852 ppt-miR166jTCCGGACCAGGCTTCATTCCC/4689 0.86 5853 ppt-miR166kTCCGGACCAGGCTTCATTCCC/4690 0.86 5854 ppt-miR166lTCCGGACCAGGCTTCATTCCC/4691 0.86 5855 ppt- TCGGACCAGGCATCATTCCTT/46920.76 5856 miR166m pta-miR166a TCGGACCAGGCTTCATTCCCC/4693 0.81 5857pta-miR166b TCGGACCAGGCTTCATTCCCC/4694 0.81 5858 ptc-miR166aTCGGACCAGGCTTCATTCCCC/4695 0.81 5859 ptc-miR166bTCGGACCAGGCTTCATTCCCC/4696 0.81 5860 ptc-miR166cTCGGACCAGGCTTCATTCCCC/4697 0.81 5861 ptc-miR166dTCGGACCAGGCTTCATTCCCC/4698 0.81 5862 ptc-miR166eTCGGACCAGGCTTCATTCCCC/4699 0.81 5863 ptc-miR166fTCGGACCAGGCTTCATTCCCC/4700 0.81 5864 ptc-miR166gTCGGACCAGGCTTCATTCCCC/4701 0.81 5865 ptc-miR166hTCGGACCAGGCTTCATTCCCC/4702 0.81 5866 ptc-miR166iTCGGACCAGGCTTCATTCCCC/4703 0.81 5867 ptc-miR166jTCGGACCAGGCTTCATTCCCC/4704 0.81 5868 ptc-miR166kTCGGACCAGGCTTCATTCCCC/4705 0.81 5869 ptc-miR166lTCGGACCAGGCTTCATTCCCC/4706 0.81 5870 ptc- TCGGACCAGGCTTCATTCCCC/47070.81 5871 miR166m ptc-miR166n TCGGACCAGGCTTCATTCCTT/4708 0.81 5872ptc-miR166o TCGGACCAGGCTTCATTCCTT/4709 0.81 5873 ptc-miR166pTCGGACCAGGCTCCATTCCTT/4710 0.76 5874 ptc-miR166qTCGGACCAGGCTTCATTCCTT/4711 0.81 5875 pvu-miR166TCGGACCAGGCTTCATTCCCC/4712 0.81 5876 pvu- TCGGACCAGGCTTCATTCCCC/47130.81 5877 miR166a rco-miR166a TCGGACCAGGCTTCATTCCCC/4714 0.81 5878rco-miR166b TCGGACCAGGCTTCATTCCCC/4715 0.81 5879 rco-miR166cTCGGACCAGGCTTCATTCCCC/4716 0.81 5880 rco-miR166dTCGGACCAGGCTTCATTCCCC/4717 0.81 5881 rco-miR166eTCGGACCAGGCTTCATTCCCC/4718 0.81 5882 sbi-miR166aTCGGACCAGGCTTCATTCCC/4719 0.81 5883 sbi-miR166bTCGGACCAGGCTTCATTCCC/4720 0.81 5884 sbi-miR166cTCGGACCAGGCTTCATTCCC/4721 0.81 5885 sbi-miR166dTCGGACCAGGCTTCATTCCC/4722 0.81 5886 sbi-miR166eTCGGACCAGGCTTCAATCCCT/4723 0.76 5887 sbi-miR166fTCGGACCAGGCTTCATTCCTC/4724 0.81 5888 sbi-miR166gTCGGACCAGGCTTCAATCCCT/4725 0.76 5889 sbi-miR166hTCGGACCAGGCTTCATTCCC/4726 0.81 5890 sbi-miR166iTCGGACCAGGCTTCATTCCC/4727 0.81 5891 sbi-miR166jTCGGACCAGGCTTCATTCCC/4728 0.81 5892 sbi-miR166kTCGGACCAGGCTTCATTCCT/4729 0.81 5893 sly-miR166aTCGGACCAGGCTTCATTCCCC/4730 0.81 5894 sly-miR166bTCGGACCAGGCTTCATTCCCC/4731 0.81 5895 smo- TCGGACCAGGCTTCATTCCCC/47320.81 5896 miR166a smo- TCGGACCAGGCTTCATTCCCC/4733 0.81 5897 miR166b smo-TCGGACCAGGCTTCATTCCCC/4734 0.81 5898 miR166c sof-miR166TCGGACCAGGCTTCATTCCCC/4735 0.81 5899 tae-miR166CCGGACCAGGCTTCATTCCCA/4736 0.86 5900 tcc-miR166aTCGGACCAGGCTTCATTCCCC/4737 0.81 5901 tcc-miR166bTCGGACCAGGCTTCATTCCC/4738 0.81 5902 tcc-miR166cTCGGACCAGGCTTCATTCCTC/4739 0.81 5903 tcc-miR166dTCGGACCAGGCTTCATTCCCC/4740 0.81 5904 vvi-miR166aTCGGACCAGGCTTCATTCC/4741 0.81 5905 vvi-miR166b TCGGACCAGGCTTCATTCC/47420.81 5906 vvi-miR166c TCGGACCAGGCTTCATTCCCC/4743 0.81 5907 vvi-miR166dTCGGACCAGGCTTCATTCCCC/4744 0.81 5908 vvi-miR166eTCGGACCAGGCTTCATTCCCC/4745 0.81 5909 vvi-miR166fTCGGACCAGGCTTCATTCCCC/4746 0.81 5910 vvi-miR166gTCGGACCAGGCTTCATTCCCC/4747 0.81 5911 vvi-miR166hTCGGACCAGGCTTCATTCCCC/4748 0.81 5912 zma- TCGGACCAGGCTTCATTCCCC/47490.81 5913 miR166a zma- TCGGACCAGGCTTCATTCCC/4750 0.81 5914 miR166b zma-TCGGACCAGGCTTCATTCCC/4751 0.81 5915 miR166c zma-TCGGACCAGGCTTCATTCCC/4752 0.81 5916 miR166d zma-TCGGACCAGGCTTCATTCCC/4753 0.81 5917 miR166e zma-TCGGACCAGGCTTCATTCCC/4754 0.81 5918 miR166f zma-TCGGACCAGGCTTCATTCCC/4755 0.81 5919 miR166g zma-TCGGACCAGGCTTCATTCCC/4756 0.81 5920 miR166h zma-TCGGACCAGGCTTCATTCCC/4757 0.81 5921 miR166i zma-TCGGACCAGGCTTCAATCCCT/4758 0.76 5922 miR166j zma-TCGGACCAGGCTTCAATCCCT/4759 0.76 5923 miR166k zma-TCGGACCAGGCTTCATTCCTC/4760 0.81 5924 miR166l zma-TCGGACCAGGCTTCATTCCTC/4761 0.81 5925 miR166m zma-TCGGACCAGGCTTCAATCCCT/4762 0.76 5926 miR166n zma-TCGGACCAGGCTTCATTCCCC/4763 0.81 5927 miR166o zma-TCGGACCAGGCTTCATTCCCC/4764 0.81 5928 miR166p zma-TCGGACCAGGCTTCATTCCCC/4765 0.81 5929 miR166q zma-TCGGACCAGGCTTCATTCCCC/4766 0.81 5930 miR166r zma-TCGGACCAGGCTTCATTCCCC/4767 0.81 5931 miR166s zma-TCGGACCAGGCTTCATTCCCC/4768 0.81 5932 miR166t zma-TCGGACCACGCTTCATTCCCC/4769 0.76 5933 miR166u ptc-miR166p aly-miR166aTCGGACCAGGCTTCATTCCCC/4770 0.86 5934 aly-miR166bTCGGACCAGGCTTCATTCCCC/4771 0.86 5935 aly-miR166cTCGGACCAGGCTTCATTCCCC/4772 0.86 5936 aly-miR166dTCGGACCAGGCTTCATTCCCC/4773 0.86 5937 aly-miR166eTCGGACCAGGCTTCATTCCCC/4774 0.86 5938 aly-miR166fTCGGACCAGGCTTCATTCCCC/4775 0.86 5939 aly-miR166gTCGGACCAGGCTTCATTCCCC/4776 0.86 5940 aqc-miR166aTCGGACCAGGCTTCATTCCTC/4777 0.9 5941 aqc- TCGGACCAGGCTTCATTCCCC/4778 0.865942 miR166b aqc-miR166c TCGGACCAGGCTTCATTCCT/4779 0.9 5943 aqc-TCGGACCAGGCTTCATTCCTC/4780 0.9 5944 miR166d aqc-miR166eTCGGACCAGGCTTCATTCCCC/4781 0.86 5945 ath-miR166aTCGGACCAGGCTTCATTCCCC/4782 0.86 5946 ath-miR166bTCGGACCAGGCTTCATTCCCC/4783 0.86 5947 ath-miR166cTCGGACCAGGCTTCATTCCCC/4784 0.86 5948 ath-miR166dTCGGACCAGGCTTCATTCCCC/4785 0.86 5949 ath-miR166eTCGGACCAGGCTTCATTCCCC/4786 0.86 5950 ath-miR166fTCGGACCAGGCTTCATTCCCC/4787 0.86 5951 ath-miR166gTCGGACCAGGCTTCATTCCCC/4788 0.86 5952 bdi-miR166TCGGACCAGGCTTCATTCCCC/4789 0.86 5953 bdi-miR166aTCGGACCAGGCTTCATTCCCC/4790 0.86 5954 bdi-miR166bTCGGACCAGGCTTCATTCCCC/4791 0.86 5955 bdi-miR166cTCGGACCAGGCTTCATTCCCC/4792 0.86 5956 bdi-miR166dTCGGACCAGGCTTCATTCCCC/4793 0.86 5957 bdi-miR166eCTCGGACCAGGCTTCATTCCC/4794 0.86 5958 bdi-miR166fTCTCGGACCAGGCTTCATTCC/4795 0.86 5959 bna- TCGGACCAGGCTTCATTCCCC/47960.86 5960 miR166a bna- TCGGACCAGGCTTCATTCCCC/4797 0.86 5961 miR166b bna-TCGGACCAGGCTTCATTCCCC/4798 0.86 5962 miR166c bna-TCGGACCAGGCTTCATTCCCC/4799 0.86 5963 miR166d cpt-miR166TCGGACCAGGCTTCATTCCC/4800 0.86 5964 crt-miR166aTCGGACCAGGCTTCATTCCCGT/4801 0.86 5965 crt-miR166bTCGGACCAGGCTTCATTCCCTT/4802 0.9 5966 csi-miR166TCGGACCAGGCTTCATTCCCC/4803 0.86 5967 csi-miR166aTCGGACCAGGCTTCATTCCCCC/4804 0.86 5968 csi-miR166bTCGGACCAGGCTTCATTCCCGT/4805 0.86 5969 csi-miR166cTCGGACCAGGCTTCATTCCC/4806 0.86 5970 csi-miR166dTCGGACCAGGCTTCATTCCCT/4807 0.9 5971 csi-miR166eTCGGACCAGGCTTCATTCCCC/4808 0.86 5972 ctr-miR166TCGGACCAGGCTTCATTCCCCC/4809 0.86 5973 far-miR166CCGGACCAGGCTTCATCCCAG/4810 0.76 5974 flm-miR166TCGGACCAGGCTTCATCCCCC/4811 0.81 5975 ghr-miR166aTCGGACCAGGCTTCATTCCCC/4812 0.86 5976 ghr-miR166bTCGGACCAGGCTTCATTCCCC/4813 0.86 5977 gma- TCGGACCAGGCTTCATTCCCC/48140.86 5978 miR166a gma- TCGGACCAGGCTTCATTCCCC/4815 0.86 5979 miR166b gma-TCGGACCAGGCTTCATTCCCC/4816 0.86 5980 miR166n gma-TCGGACCAGGCTTCATTCCCC/4817 0.86 5981 miR166o gma-TCGGACCAGGCTTCATTCCCG/4818 0.86 5982 miR166q gma-TCGGACCAGGCTTCATTCCCT/4819 0.9 5983 miR166r hvu-miR166TCGGACCAGGCTTCATTCCCC/4820 0.86 5984 hvu- TCGGACCAGGCTTCATTCCCC/48210.86 5985 miR166b hvu- TCGGACCAGGCTTCATTCCCC/4822 0.86 5986 miR166chvv-miR166 TCGGACCAGGCTTCATTCCCC/4823 0.86 5987 ini-miR166TCGGACCAGGCTTCATTCCTC/4824 0.9 5988 mtr-miR166TCGGACCAGGCTTCATTCCCC/4825 0.86 5989 mtr- TCGGACCAGGCTTCATTCCTA/4826/0.9 5990 miR166b TCGGACCAGGCTTCATTCCCC/5116 mtr-miR166cTCGGACCAGGCTTCATTCCTC/4827 0.9 5991 mtr- TCGGGCCAGGCTTCATCCCCC/4828 0.765992 miR166d mtr-miR166e TCGGACCAGGCTTCATTCCCC/4829 0.86 5993mtr-miR166f TCGGACCAGGCTTCATTCCTC/4830 0.9 5994 mtr-TCGGACCAGGCTTCATTCCCC/4831 0.86 5995 miR166g mtr-TCGGACCAGGCTTCATTCCCC/4832 0.86 5996 miR166h nsy-miR166TCGGACCAGGCTTCATTCCCC/4833 0.86 5997 osa-miR166aTCGGACCAGGCTTCATTCCCC/4834 0.86 5998 osa-miR166bTCGGACCAGGCTTCATTCCCC/4835 0.86 5999 osa-miR166cTCGGACCAGGCTTCATTCCCC/4836 0.86 6000 osa-miR166dTCGGACCAGGCTTCATTCCCC/4837 0.86 6001 osa-miR166eTCGAACCAGGCTTCATTCCCC/4838 0.81 6002 osa-miR166fTCGGACCAGGCTTCATTCCCC/4839 0.86 6003 osa-miR166gTCGGACCAGGCTTCATTCCTC/4840 0.9 6004 osa-miR166hTCGGACCAGGCTTCATTCCTC/4841 0.9 6005 osa-miR166iTCGGATCAGGCTTCATTCCTC/4842 0.86 6006 osa-miR166jTCGGATCAGGCTTCATTCCTC/4843 0.86 6007 osa-miR166kTCGGACCAGGCTTCAATCCCT/4844 0.86 6008 osa-miR166lTCGGACCAGGCTTCAATCCCT/4845 0.86 6009 osa- TCGGACCAGGCTTCATTCCCT/4846 0.96010 miR166m osa-miR166n TCGGACCAGGCTTCATTCCCC/4847 0.86 6011 pab-TCGGACCAGGCTTCATTCCTC/4848 0.9 6012 miR166a pab-TCGGACCAGGCTTCATTCCTT/4849 0.95 6013 miR166b pga-miR166TCGGACCAGGCTTCATTCCTT/4850 0.95 6014 ppt-miR166aTCGGACCAGGCTTCATTCCCC/4851 0.86 6015 ppt-miR166bTCGGACCAGGCTTCATTCCCC/4852 0.86 6016 ppt-miR166cTCGGACCAGGCTTCATTCCCC/4853 0.86 6017 ppt-miR166dTCGGACCAGGCTTCATTCCCC/4854 0.86 6018 ppt-miR166eTCGGACCAGGCTTCATTCCCC/4855 0.86 6019 ppt-miR166fTCGGACCAGGCTTCATTCCCC/4856 0.86 6020 ppt-miR166gTCGGACCAGGCTTCATTCCCC/4857 0.86 6021 ppt-miR166hTCGGACCAGGCTTCATTCCCC/4858 0.86 6022 ppt-miR166iTCGGACCAGGCTTCATTCCCC/4859 0.86 6023 ppt-miR166jTCCGGACCAGGCTTCATTCCC/4860 0.81 6024 ppt-miR166kTCCGGACCAGGCTTCATTCCC/4861 0.81 6025 ppt-miR166lTCCGGACCAGGCTTCATTCCC/4862 0.81 6026 ppt- TCGGACCAGGCATCATTCCTT/4863 0.96027 miR166m pta-miR166a TCGGACCAGGCTTCATTCCCC/4864 0.86 6028pta-miR166b TCGGACCAGGCTTCATTCCCC/4865 0.86 6029 pta-miR166cCCGGACCAGGCTTCATCCCAG/4866 0.76 6030 ptc-miR166aTCGGACCAGGCTTCATTCCCC/4867 0.86 6031 ptc-miR166bTCGGACCAGGCTTCATTCCCC/4868 0.86 6032 ptc-miR166cTCGGACCAGGCTTCATTCCCC/4869 0.86 6033 ptc-miR166dTCGGACCAGGCTTCATTCCCC/4870 0.86 6034 ptc-miR166eTCGGACCAGGCTTCATTCCCC/4871 0.86 6035 ptc-miR166fTCGGACCAGGCTTCATTCCCC/4872 0.86 6036 ptc-miR166gTCGGACCAGGCTTCATTCCCC/4873 0.86 6037 ptc-miR166hTCGGACCAGGCTTCATTCCCC/4874 0.86 6038 ptc-miR166iTCGGACCAGGCTTCATTCCCC/4875 0.86 6039 ptc-miR166jTCGGACCAGGCTTCATTCCCC/4876 0.86 6040 ptc-miR166kTCGGACCAGGCTTCATTCCCC/4877 0.86 6041 ptc-miR166lTCGGACCAGGCTTCATTCCCC/4878 0.86 6042 ptc- TCGGACCAGGCTTCATTCCCC/48790.86 6043 miR166m ptc-miR166n TCGGACCAGGCTTCATTCCTT/4880 0.95 6044ptc-miR166o TCGGACCAGGCTTCATTCCTT/4881 0.95 6045 ptc-miR166qTCGGACCAGGCTTCATTCCTT/4882 0.95 6046 pvu-miR166TCGGACCAGGCTTCATTCCCC/4883 0.86 6047 pvu- TCGGACCAGGCTTCATTCCCC/48840.86 6048 miR166a rco-miR166a TCGGACCAGGCTTCATTCCCC/4885 0.86 6049rco-miR166b TCGGACCAGGCTTCATTCCCC/4886 0.86 6050 rco-miR166cTCGGACCAGGCTTCATTCCCC/4887 0.86 6051 rco-miR166dTCGGACCAGGCTTCATTCCCC/4888 0.86 6052 rco-miR166eTCGGACCAGGCTTCATTCCCC/4889 0.86 6053 sbi-miR166aTCGGACCAGGCTTCATTCCC/4890 0.86 6054 sbi-miR166bTCGGACCAGGCTTCATTCCC/4891 0.86 6055 sbi-miR166cTCGGACCAGGCTTCATTCCC/4892 0.86 6056 sbi-miR166dTCGGACCAGGCTTCATTCCC/4893 0.86 6057 sbi-miR166eTCGGACCAGGCTTCAATCCCT/4894 0.86 6058 sbi-miR166fTCGGACCAGGCTTCATTCCTC/4895 0.9 6059 sbi-miR166gTCGGACCAGGCTTCAATCCCT/4896 0.86 6060 sbi-miR166hTCGGACCAGGCTTCATTCCC/4897 0.86 6061 sbi-miR166iTCGGACCAGGCTTCATTCCC/4898 0.86 6062 sbi-miR166jTCGGACCAGGCTTCATTCCC/4899 0.86 6063 sbi-miR166kTCGGACCAGGCTTCATTCCT/4900 0.9 6064 sly-miR166aTCGGACCAGGCTTCATTCCCC/4901 0.86 6065 sly-miR166bTCGGACCAGGCTTCATTCCCC/4902 0.86 6066 smo- TCGGACCAGGCTTCATTCCCC/49030.86 6067 miR166a smo- TCGGACCAGGCTTCATTCCCC/4904 0.86 6068 miR166b smo-TCGGACCAGGCTTCATTCCCC/4905 0.86 6069 miR166c sof-miR166TCGGACCAGGCTTCATTCCCC/4906 0.86 6070 tae-miR166CCGGACCAGGCTTCATTCCCA/4907 0.81 6071 tcc-miR166aTCGGACCAGGCTTCATTCCCC/4908 0.86 6072 tcc-miR166bTCGGACCAGGCTTCATTCCC/4909 0.86 6073 tcc-miR166cTCGGACCAGGCTTCATTCCTC/4910 0.9 6074 tcc-miR166dTCGGACCAGGCTTCATTCCCC/4911 0.86 6075 vvi-miR166aTCGGACCAGGCTTCATTCC/4912 0.86 6076 vvi-miR166b TCGGACCAGGCTTCATTCC/49130.86 6077 vvi-miR166c TCGGACCAGGCTTCATTCCCC/4914 0.86 6078 vvi-miR166dTCGGACCAGGCTTCATTCCCC/4915 0.86 6079 vvi-miR166eTCGGACCAGGCTTCATTCCCC/4916 0.86 6080 vvi-miR166fTCGGACCAGGCTTCATTCCCC/4917 0.86 6081 vvi-miR166gTCGGACCAGGCTTCATTCCCC/4918 0.86 6082 vvi-miR166hTCGGACCAGGCTTCATTCCCC/4919 0.86 6083 zma- TCGGACCAGGCTTCATTCCCC/49200.86 6084 miR166a zma- TCGGACCAGGCTTCATTCCC/4921 0.86 6085 miR166b zma-TCGGACCAGGCTTCATTCCC/4922 0.86 6086 miR166c zma-TCGGACCAGGCTTCATTCCC/4923 0.86 6087 miR166d zma-TCGGACCAGGCTTCATTCCC/4924 0.86 6088 miR166e zma-TCGGACCAGGCTTCATTCCC/4925 0.86 6089 miR166f zma-TCGGACCAGGCTTCATTCCC/4926 0.86 6090 miR166g zma-TCGGACCAGGCTTCATTCCC/4927 0.86 6091 miR166h zma-TCGGACCAGGCTTCATTCCC/4928 0.86 6092 miR166i zma-TCGGACCAGGCTTCAATCCCT/4929 0.86 6093 miR166j zma-TCGGACCAGGCTTCAATCCCT/4930 0.86 6094 miR166k zma-TCGGACCAGGCTTCATTCCTC/4931 0.9 6095 miR166l zma-TCGGACCAGGCTTCATTCCTC/4932 0.9 6096 miR166m zma-TCGGACCAGGCTTCAATCCCT/4933 0.86 6097 miR166n zma-TCGGACCAGGCTTCATTCCCC/4934 0.86 6098 miR166o zma-TCGGACCAGGCTTCATTCCCC/4935 0.86 6099 miR166p zma-TCGGACCAGGCTTCATTCCCC/4936 0.86 6100 miR166q zma-TCGGACCAGGCTTCATTCCCC/4937 0.86 6101 miR166r zma-TCGGACCAGGCTTCATTCCCC/4938 0.86 6102 miR166s zma-TCGGACCAGGCTTCATTCCCC/4939 0.86 6103 miR166t zma-TCGGACCACGCTTCATTCCCC/4940 0.81 6104 miR166u vvi-miR394b ahy-miR394TTGGCATTCTGTCCACCTCC/4941 1 6105 aly-miR394a TTGGCATTCTGTCCACCTCC/4942 16106 aly-miR394b TTGGCATTCTGTCCACCTCC/4943 1 6107 ath-miR394aTTGGCATTCTGTCCACCTCC/4944 1 6108 ath-miR394b TTGGCATTCTGTCCACCTCC/4945 16109 bdi-miR394 TTGGCATTCTGTCCACCTCC/4946 1 6110 csi-miR394TTGGCATTCTGTCCACCTCC/4947 1 6111 ghr-miR394 TTGGCATTCTGTCCACCTCC/4948 16112 ghr-miR394a TTGGCATTCTGTCCACCTCC/4949 1 6113 ghr-miR394bTTGGCATTCTGTCCACCTCC/4950 1 6114 gma- AGGTGGGCATACTGTCAACT/4951 0.656115 miR394b osa-miR394 TTGGCATTCTGTCCACCTCC/4952 1 6116 ptc-TTGGCATTCTGTCCACCTCC/4953 1 6117 miR394a-5p ptc-TTGGCATTCTGTCCACCTCC/4954 1 6118 miR394b-5p sbi-miR394aTTGGCATTCTGTCCACCTCC/4955 1 6119 sbi-miR394b TTGGCATTCTGTCCACCTCC/4956 16120 tcc-miR394a TTGGCATTCTGTCCACCTCC/4957 1 6121 tcc-miR394bTTGGCATTCTGTCCACCTCC/4958 1 6122 vvi-miR394a TTGGCATTCTGTCCACCTCCAT/49591 6123 vvi-miR394c TTGGCATTCTGTCCACCTCCAT/4960 1 6124 zma-TTGGCATTCTGTCCACCTCC/4961 1 6125 miR394a zma- TTGGCATTCTGTCCACCTCC/49621 6126 miR394b zma-miR167u ahy-miR167- TGAAGCTGCCAGCATGATCTT/4963 0.956127 5p aly-miR167a TGAAGCTGCCAGCATGATCTA/4964 0.95 6128 aly-miR167bTGAAGCTGCCAGCATGATCTA/4965 0.95 6129 aly- GGTCATGCTCTGACAGCCTCACT/49660.5 6130 miR167b* aly-miR167c TAAGCTGCCAGCATGATCTTG/4967 0.85 6131aly-miR167d TGAAGCTGCCAGCATGATCTGG/4968 1 6132 aqc-miR167TCAAGCTGCCAGCATGATCTA/4969 0.9 6133 ath-miR167aTGAAGCTGCCAGCATGATCTA/4970 0.95 6134 ath-miR167bTGAAGCTGCCAGCATGATCTA/4971 0.95 6135 ath-miR167cTAAGCTGCCAGCATGATCTTG/4972 0.85 6136 ath-miR167dTGAAGCTGCCAGCATGATCTGG/4973 1 6137 ath- TGAAGCTGCCAGCATGATCTG/4974 16138 miR167m bdi-miR167 TGAAGCTGCCAGCATGATCTA/4975 0.95 6139 bdi-miR167aTGAAGCTGCCAGCATGATCTA/4976 0.95 6140 bdi-miR167bTGAAGCTGCCAGCATGATCTA/4977 0.95 6141 bdi-miR167cTGAAGCTGCCAGCATGATCTGA/4978 1 6142 bdi-miR167dTGAAGCTGCCAGCATGATCTGA/4979 1 6143 bna- TGAAGCTGCCAGCATGATCTAA/4980 0.956144 miR167a bna- TGAAGCTGCCAGCATGATCTAA/4981 0.95 6145 miR167b bna-TGAAGCTGCCAGCATGATCTA/4982 0.95 6146 miR167c bra-miR167aTGAAGCTGCCAGCATGATCTA/4983 0.95 6147 bra-miR167bTGAAGCTGCCAGCATGATCTA/4984 0.95 6148 bra-miR167cTGAAGCTGCCAGCATGATCTA/4985 0.95 6149 bra-miR167dTGAAGCTGCCAGCATGATCTA/4986 0.95 6150 ccl-miR167aTGAAGCTGCCAGCATGATCTGA/4987 1 6151 ccl-miR167bTGAAGCTGCCAGCATGATCTGA/4988 1 6152 cle-miR167 TGAAGCTGCCAGCATGATCTG/49891 6153 csi-miR167a TGAAGCTGCCAGCATGATCTG/4990 1 6154 csi-miR167bTGAAGCTGCCAGCATGATCTT/4991 0.95 6155 csi-miR167cTGAAGCTGCCAGCATGATCTG/4992 1 6156 ctr-miR167 TGAAGCTGCCAGCATGATCTGA/49931 6157 ghr-miR167 TGAAGCTGCCAGCATGATCTA/4994 0.95 6158 gma-TGAAGCTGCCAGCATGATCTA/4995 0.95 6159 miR167a gma-TGAAGCTGCCAGCATGATCTA/4996 0.95 6160 miR167b gma-TGAAGCTGCCAGCATGATCTG/4997 1 6161 miR167c gma-TGAAGCTGCCAGCATGATCTA/4998 0.95 6162 miR167d gma-TGAAGCTGCCAGCATGATCTT/4999 0.95 6163 miR167e gma-TGAAGCTGCCAGCATGATCTT/5000 0.95 6164 miR167f gma-TGAAGCTGCCAGCATGATCTGA/5001 1 6165 miR167g gma-TGAAGCTGCCAGCATGATCT/5002 0.95 6166 miR167n gma-TGAAGCTGCCAGCATGATCTG/5003 1 6167 miR167o gso-miR167aTGAAGCTGCCAGCATGATCTG/5004 1 6168 ini-miR167 TGAAGCTGCCAGCATGATCTG/50051 6169 lja-miR167 TGAAGCTGCCAGCATGATCTG/5006 1 6170 mtr-miR167TGAAGCTGCCAGCATGATCTA/5007 0.95 6171 osa-miR167aTGAAGCTGCCAGCATGATCTA/5008 0.95 6172 osa- ATCATGCATGACAGCCTCATTT/50090.65 6173 miR167a* osa-miR167b TGAAGCTGCCAGCATGATCTA/5010 0.95 6174osa-miR167c TGAAGCTGCCAGCATGATCTA/5011 0.95 6175 osa-miR167dTGAAGCTGCCAGCATGATCTG/5012 1 6176 osa-miR167e TGAAGCTGCCAGCATGATCTG/50131 6177 osa-miR167f TGAAGCTGCCAGCATGATCTG/5014 1 6178 osa-miR167gTGAAGCTGCCAGCATGATCTG/5015 1 6179 osa-miR167h TGAAGCTGCCAGCATGATCTG/50161 6180 osa-miR167i TGAAGCTGCCAGCATGATCTG/5017 1 6181 osa-miR167jTGAAGCTGCCAGCATGATCTG/5018 1 6182 osa- TGAAGCTGCCAGCATGATCTG/5019 1 6183miR167m osa-miR167n TGAAGCTGCCAGCATGATCTG/5020 1 6184 pco-miR167TGAAGCTGCCAGCATGATCTT/5021 0.95 6185 ppl-miR167aTGAAGCTGCCAGCATGATCTA/5022 0.95 6186 ppl-miR167bTGAAGCTGCCAGCATGATCTG/5023 1 6187 ppt-miR167 GGAAGCTGCCAGCATGATCCT/50240.85 6188 ptc-miR167a TGAAGCTGCCAGCATGATCTA/5025 0.95 6189 ptc-miR167bTGAAGCTGCCAGCATGATCTA/5026 0.95 6190 ptc-miR167cTGAAGCTGCCAGCATGATCTA/5027 0.95 6191 ptc-miR167dTGAAGCTGCCAGCATGATCTA/5028 0.95 6192 ptc-miR167eTGAAGCTGCCAGCATGATCTG/5029 1 6193 ptc-miR167f TGAAGCTGCCAGCATGATCTT/50300.95 6194 ptc-miR167g TGAAGCTGCCAGCATGATCTT/5031 0.95 6195 ptc-miR167hTGAAGCTGCCAACATGATCTG/5032 1 6196 pts-miR167 TGAAGCTGCCAGCATGATCTG/50331 6197 rco-miR167a TGAAGCTGCCAGCATGATCTA/5034 0.95 6198 rco-miR167bTGAAGCTGCCAGCATGATCTA/5035 0.95 6199 rco-miR167cTGAAGCTGCCAGCATGATCTGG/5036 1 6200 sbi-miR167aTGAAGCTGCCAGCATGATCTA/5037 0.95 6201 sbi-miR167bTGAAGCTGCCAGCATGATCTA/5038 0.95 6202 sbi-miR167cTGAAGCTGCCAGCATGATCTG/5039 1 6203 sbi-miR167d TGAAGCTGCCAGCATGATCTG/50401 6204 sbi-miR167e TGAAGCTGCCAGCATGATCTG/5041 1 6205 sbi-miR167fTGAAGCTGCCAGCATGATCTG/5042 1 6206 sbi-miR167g TGAAGCTGCCAGCATGATCTG/50431 6207 sbi-miR167h TGAAGCTGCCAGCATGATCTG/5044 1 6208 sbi-miR167iTGAAGCTGCCAGCATGATCTA/5045 0.95 6209 sly-miR167TGAAGCTGCCAGCATGATCTA/5046 0.95 6210 sof-miR167aTGAAGCTGCCAGCATGATCTG/5047 1 6211 sof-miR167b TGAAGCTGCCAGCATGATCTG/50481 6212 ssp-miR167 TGAAGCTGCCAGCATGATCTG/5049 1 6213 ssp-miR167bTGAAGCTGCCAGCATGATCTG/5050 1 6214 tae-miR167 TGAAGCTGCCAGCATGATCTA/50510.95 6215 tae-miR167b TGAAGCTGACAGCATGATCTA/5052 0.9 6216 tcc-miR167aTGAAGCTGCCAGCATGATCTA/5053 0.95 6217 tcc-miR167bTGAAGCTGCCAGCATGATCTA/5054 0.95 6218 tcc-miR167cTGAAGCTGCCAGCATGATCTT/5055 0.95 6219 vvi-miR167aTGAAGCTGCCAGCATGATCTG/5056 1 6220 vvi-miR167b TGAAGCTGCCAGCATGATCTA/50570.95 6221 vvi-miR167c TGAAGCTGCCAGCATGATCTC/5058 0.95 6222 vvi-miR167dTGAAGCTGCCAGCATGATCTA/5059 0.95 6223 vvi-miR167eTGAAGCTGCCAGCATGATCTA/5060 0.95 6224 zma- TGAAGCTGCCAGCATGATCTA/50610.95 6225 miR167a zma- TGAAGCTGCCAGCATGATCTA/5062 0.95 6226 miR167b zma-GATCATGCTGTGACAGTTTCACT/5063 0.55 6227 miR167b* zma-TGAAGCTGCCAGCATGATCTA/5064 0.95 6228 miR167c zma-TGAAGCTGCCAGCATGATCTA/5065 0.95 6229 miR167d zma-TGAAGCTGCCAGCATGATCTG/5066 1 6230 miR167e zma-TGAAGCTGCCAGCATGATCTG/5067 1 6231 miR167f zma-TGAAGCTGCCAGCATGATCTG/5068 1 6232 miR167g zma-TGAAGCTGCCAGCATGATCTG/5069 1 6233 miR167h zma-TGAAGCTGCCAGCATGATCTG/5070 1 6234 miR167i zma-TGAAGCTGCCAGCATGATCTG/5071 1 6235 miR167j zma-TGAAGCTGCCAGCATGATCTG/5072 1 6236 miR167k zma-TGAAGCTGCCAGCATGATCTG/5073 1 6237 miR167l zma-TGAAGCTGCCAGCATGATCTG/5074 1 6238 miR167m zma-TGAAGCTGCCAGCATGATCTA/5075 0.95 6239 miR167n zma-TGAAGCTGCCAGCATGATCTA/5076 0.95 6240 miR167o zma-TGAAGCTGCCAGCATGATCTA/5077 0.95 6241 miR167p zma-TGAAGCTGCCAGCATGATCTA/5078 0.95 6242 miR167q zma-TGAAGCTGCCAGCATGATCTA/5079 0.95 6243 miR167r zma-TGAAGCTGCCAGCATGATCTA/5080 0.95 6244 miR167s zma-TGAAGCTGCCAGCATGATCTA/5081 0.95 6245 miR167t gma-miR2119 mtr-TCAAAGGGAGGTGTGGAGTAG/5082 0.76 6246 miR2119 pvu-TCAAAGGGAGTTGTAGGGGAA/5083 1 6247 miR2119 osa-miR162a aly-miR162aTCGATAAACCTCTGCATCCAG/5084 1 6248 aly-miR162b TCGATAAACCTCTGCATCCAG/50851 6249 ath-miR162a TCGATAAACCTCTGCATCCAG/5086 1 6250 ath-miR162bTCGATAAACCTCTGCATCCAG/5087 1 6251 bdi-miR162 TCGATAAACCTCTGCATCCGG/50880.95 6252 cpa-miR162a TCGATAAACCTCTGCATCCAG/5089 1 6253 csi-miR162TCGATAAACCTCTGCATCCAG/5090 1 6254 csi-miR162.5TCGATAAACCTCTGCATCCAG/5091 1 6255 ghr-miR162a TCGATAAACCTCTGCATCCAG/50921 6256 gma-miR162 TCGATAAACCTCTGCATCCA/5093 0.95 6257 gma-TCGATAAACCTCTGCATCCAG/5094 1 6258 miR162a gma-TCGATAAACCTCTGCATCCAG/5095 1 6259 miR162m llu-miR162TCGATAAACCTCTGCATCCAG/5096 1 6260 lsa-miR162 TCGATAAACCTCTGCATCCAG/50971 6261 mdo-miR162 TCGATAAACCTTTGCATCCAG/5098 0.95 6262 mtr-miR162TCGATAAACCTCTGCATCCAG/5099 1 6263 mtr- TCGATAAACCTCTGCATCCA/5100 0.956264 miR162b mtr-miR162c TCGATGAACCGCTGCATCCAG/5101 0.9 6265 mtr-TCGATAAACCTCTGCATCCAG/5102 1 6266 miR162d osa-miR162bTCGATAAGCCTCTGCATCCAG/5103 0.95 6267 osa- TCGATAAGCCTCTGCATCCAG/51040.95 6268 miR162m ptc-miR162a TCGATAAACCTCTGCATCCAG/5105 1 6269ptc-miR162b TCGATAAACCTCTGCATCCAG/5106 1 6270 ptc-miR162cTCGATAAACCTCTGCATCCAG/5107 1 6271 rco-miR162 TCGATAAACCTCTGCATCCAG/51081 6272 sbi-miR162 TCGATAAACCTCTGCATCCAG/5109 1 6273 sly-miR162TCGATAAACCTCTGCATCCAG/5110 1 6274 tcc-miR162 TCGATAAACCTCTGCATCCAG/51111 6275 vvi-miR162 TCGATAAACCTCTGCATCCAG/5112 1 6276 zma-miR162TCGATAAACCTCTGCATCCA/5113 0.95 6277 zma- TCGATAAACCTCTGCATCCAG/5114 16278 miR162b

Example 3

Identification of miRNAs Associated with Abiotic Stress and TargetPrediction Using Bioinformatics Tools

Small RNAs that are potentially associated with improved abiotic orbiotic stress tolerance can be identified by proprietary computationalalgorithms that analyze RNA expression profiles alongside publiclyavailable gene and protein databases. A high throughput screening isperformed on microarrays loaded with miRNAs that were found to bedifferential under multiple stress and optimal environmental conditionsand in different plant tissues. The initial trait-associated miRNAs arelater validated by quantitative Real Time PCR (qRT-PCR).

Target prediction—homologous or orthologous genes to the genes ofinterest in soybean and/or arabidopsis are found through a proprietarytool that analyzes publicly available genomic as well as expression andgene annotation databases from multiple plant species. Homologous andorthologous protein and nucleotide sequences of target genes of thesmall RNA sequences of the invention, were found using BLAST having atleast 70% identity on at least 60% of the entire master gene length, andare summarized in Tables 9-10 below.

TABLE 9 Target Genes of upregulated Small RNA Molecules Associated withAbiotic Stress Tolerance in Soybean Plants. Mir Homolog NucleotideBinding NCBI NCBI GI Protein Nucleotide Mir Name Position Accessionnumber Identity Organism Seq id no: Seq id no: aqc- 305-325 XP_003551790356567161 1 Glycine max 6315 8130 miR159 334-354 XP_003554567 3565728271 Glycine max 6316 8131 XP_003521605 356505654 0.9723 Glycine max 63178132 XP_003521606 356505656 0.9723 Glycine max 6318 8133 XP_003626013357511448 0.8949 Medicago truncatula 6319 8134 XP_002272575 2254376760.8423 Vitis vinifera 6320 8135 CBI37003 270254427 0.8409 Vitis vinifera6321 8136 XP_002515224 255761086 0.8382 Ricinus communis 6322 CAN71135147786943 0.8354 Vitis vinifera 6323 8137 XP_002301535 255761085 0.8313Populus trichocarpa 6324 ADF30190 294713705 0.8119 Brassica napus 63258138 124-144 XP_003543825 356550908 1 Glycine max 6326 8139 752-772XP_003543825 356550908 1 Glycine max 6327 8140 XP_003556814 3565773990.813 Glycine max 6328 8141 360-380 XP_003549039 356561539 1 Glycine max6329 8142 XP_003533180 356529191 0.8282 Glycine max 6330 8143 614-634XP_003541563 356546291 1 Glycine max 6331 8144 XP_003545791 3565549240.805 Glycine max 6332 8145 905-925 XP_003556814 356577399 1 Glycine max6333 8146 XP_003543825 356550908 0.8659 Glycine max 6334 8147 141-161XP_003518351 356499037 1 Glycine max 6335 8148 2016-2036 XP_003538988356541033 1 Glycine max 6336 8149 XP_003607189 357473808 0.7407 Medicagotruncatula 6337 8150 XP_003604038 357467506 0.7035 Medicago truncatula6338 8151 839-859 XP_003526354 356515330 1 Glycine max 6339 8152XP_003523913 356510372 0.9333 Glycine max 6340 8153 842-862 XP_003523913356510372 1 Glycine max 6341 8154 XP_003526354 356515330 0.9333 Glycinemax 6342 8155 926-946 XP_003545791 356554924 1 Glycine max 6343 8156XP_003541563 356546291 0.8662 Glycine max 6344 8157 ath- 334-354XP_003554567 356572827 1 Glycine max 6345 8158 miR159b XP_003521605356505654 0.9723 Glycine max 6346 8159 XP_003521606 356505656 0.9723Glycine max 6347 8160 XP_003626013 357511448 0.8949 Medicago truncatula6348 8161 XP_002272575 225437676 0.8423 Vitis vinifera 6349 8162CBI37003 270254427 0.8409 Vitis vinifera 6350 8163 XP_002515224255761086 0.8382 Ricinus communis 6351 CAN71135 147786943 0.8354 Vitisvinifera 6352 8164 XP_002301535 255761085 0.8313 Populus trichocarpa6353 ADF30190 294713705 0.8119 Brassica napus 6354 8165 405-425XP_003542140 356547479 1 Glycine max 6355 8166 XP_003546908 3565572040.8696 Glycine max 6356 8167 305-325 XP_003541823 356546825 1 Glycinemax 6357 8168 124-144 XP_003543825 356550908 1 Glycine max 6358 8169XP_003556814 356577399 0.813 Glycine max 6359 8170 839-859 XP_003526354356515330 1 Glycine max 6360 8171 XP_003523913 356510372 0.9333 Glycinemax 6361 8172 2079-2099 XP_003538988 356541033 1 Glycine max 6362 8173XP_003607189 357473808 0.7407 Medicago truncatula 6363 8174 XP_003604038357467506 0.7035 Medicago truncatula 6364 8175 614-634 XP_003541563356546291 1 Glycine max 6365 8176 XP_003545791 356554924 0.805 Glycinemax 6366 8177 905-925 XP_003556814 356577399 1 Glycine max 6367 8178XP_003543825 356550908 0.8659 Glycine max 6368 8179 926-946 XP_003545791356554924 1 Glycine max 6369 8180 XP_003541563 356546291 0.8662 Glycinemax 6370 8181 842-862 XP_003523913 356510372 1 Glycine max 6371 8182XP_003526354 356515330 0.9333 Glycine max 6372 8183 ath- 251-271NP_001236122 351727005 1 Glycine max 6373 8184 miR159c ACU21384255642238 0.7676 Glycine max 6374 8185 46-66 XP_003519140 356500640 1Glycine max 6375 8186 XP_003549552 356562588 0.8757 Glycine max 63768187 XP_003610353 357480134 0.9006 Medicago truncatula 6377 8188 817-837XP_003525997 356514606 1 Glycine max 6378 8189 XP_003540066 3565432300.8441 Glycine max 6379 8190 289-309 XP_003518627 356499601 1 Glycinemax 6380 8191 XP_003542153 356547506 0.9478 Glycine max 6381 8192ADN33938 307136081 0.7937 Cucumis melo 6382 8193 subsp. meloXP_002518919 255761086 0.7755 Ricinus communis 6383 XP_002279642225426567 0.7755 Vitis vinifera 6384 8194 XP_002870592 297853636 0.7664Arabidopsis lyrata 6385 subsp. lyrata NP_199024 30693991 0.7642Arabidopsis thaliana 6386 8195 AAM63843 21405504 0.7596 Arabidopsisthaliana 6387 8196 XP_002299422 255761085 0.7528 Populus trichocarpa6388 XP_002303695 255761085 0.7574 Populus trichocarpa 6389 124-144XP_003543825 356550908 1 Glycine max 6390 8197 XP_003556814 3565773990.813 Glycine max 6391 8198 461-481 XP_003542153 356547506 1 Glycine max6392 8199 XP_003518627 356499601 0.9436 Glycine max 6393 8200 1162-1182XP_003531162 356525093 1 Glycine max 6394 8201 XP_003524148 3565108520.7692 Glycine max 6395 8202 839-859 XP_003526354 356515330 1 Glycinemax 6396 8203 XP_003523913 356510372 0.9333 Glycine max 6397 8204495-515 XP_003524148 356510852 1 Glycine max 6398 8205 XP_003531162356525093 0.7762 Glycine max 6399 8206 949-969 XP_003547199 356557800 1Glycine max 6400 8207 XP_003541668 356546507 0.8748 Glycine max 64018208 614-634 XP_003541563 356546291 1 Glycine max 6402 8209 XP_003545791356554924 0.805 Glycine max 6403 8210 905-925 XP_003556814 356577399 1Glycine max 6404 8211 XP_003543825 356550908 0.8659 Glycine max 64058212 2016-2036 XP_003538988 356541033 1 Glycine max 6406 8213XP_003607189 357473808 0.7407 Medicago truncatula 6407 8214 XP_003604038357467506 0.7035 Medicago truncatula 6408 8215 1330-1350 XP_003541668356546507 1 Glycine max 6409 8216 XP_003547199 356557800 0.8383 Glycinemax 6410 8217 842-862 XP_003523913 356510372 1 Glycine max 6411 8218XP_003526354 356515330 0.9333 Glycine max 6412 8219 926-946 XP_003545791356554924 1 Glycine max 6413 8220 XP_003541563 356546291 0.8662 Glycinemax 6414 8221 ath- 288-307 AES96257 357486022 1 Medicago truncatula 64158222 miRf10240- XP_003613299 357486022 1 Medicago truncatula 6416 8223akr XP_003517816 356497943 0.9446 Glycine max 6417 8224 XP_003519545356501464 0.9418 Glycine max 6418 8225 XP_003517817 356497945 0.9446Glycine max 6419 8226 XP_003530656 356524070 0.8809 Glycine max 64208227 XP_003551180 356565911 0.8753 Glycine max 6421 8228 XP_002531401255761086 0.8421 Ricinus communis 6422 XP_003628672 357516766 0.8504Medicago truncatula 6423 8229 XP_002266222 225424743 0.8393 Vitisvinifera 6424 8230 CAN76955 147776916 0.8338 Vitis vinifera 6425 82311503-1522 XP_003547951 356559326 1 Glycine max 6426 8232 ACU23369255645751 0.998 Glycine max 6427 8233 XP_003547950 356559324 0.8408Glycine max 6428 8234 ACU18289 255635883 0.8388 Glycine max 6429 8235XP_003629354 357518130 0.7531 Medicago truncatula 6430 8236 XP_002531509255761086 0.7204 Ricinus communis 6431 ABK95760 118487875 0.7245 Populustrichocarpa 6432 8237 XP_003612122 357483670 0.7327 Medicago truncatula6433 8238 XP_002333330 255761085 0.7122 Populus trichocarpa 6434XP_002310843 255761085 0.702 Populus trichocarpa 6435 115-134 AES78100357503186 1 Medicago truncatula 6436 8239 XP_003621882 357503186 1Medicago truncatula 6437 8240  95-114 AET03830 357518130 1 Medicagotruncatula 6438 8241 XP_003547951 356559326 0.811 Glycine max 6439 8242487-506 NP_001238238 351721588 1 Glycine max 6440 8243 NP_001237618351725834 0.9947 Glycine max 6441 8244 ACU16478 255632239 0.9679 Glycinemax 6442 8245 XP_003519150 356500660 0.7968 Glycine max 6443 8246149-168 XP_003531007 356524781 1 Glycine max 6444 8247 XP_003528405356519488 0.9391 Glycine max 6445 8248 XP_003608343 357476114 0.8746Medicago truncatula 6446 8249 XP_002264303 225429239 0.7885 Vitisvinifera 6447 8250 CBI35448 270252044 0.7885 Vitis vinifera 6448XP_002518318 255761086 0.767 Ricinus communis 6449 NP_201251 1453596430.7742 Arabidopsis thaliana 6450 8251 XP_002866616 297853636 0.7778Arabidopsis lyrata 6451 subsp. lyrata ABK95206 118486740 0.7527 Populustrichocarpa 6452 8252 XP_002313210 255761085 0.7491 Populus trichocarpa6453 214-233 XP_003525932 356514476 1 Glycine max 6454 8253 700-719XP_003523287 356509093 1 Glycine max 6455 8254 XP_003526789 3565162100.9406 Glycine max 6456 8255 XP_003518282 356498893 0.7406 Glycine max6457 8256 XP_003544853 356553012 0.7406 Glycine max 6458 8257 ath-587-606 XP_003543893 356551052 1 Glycine max 6459 8258 miRf10368-XP_003554723 356573142 0.9659 Glycine max 6460 8259 akr ACJ85427357496652 0.8447 Medicago truncatula 6461 8260 XP_003531841 3565264700.8333 Glycine max 6462 8261 XP_003552550 356568703 0.8106 Glycine max6463 8262 XP_002284521 225457306 0.7765 Vitis vinifera 6464 8263XP_002323884 255761085 0.7765 Populus trichocarpa 6465 XP_002284184225452935 0.7803 Vitis vinifera 6466 8264 XP_002306045 255761085 0.7424Populus trichocarpa 6467 XP_002526069 255761086 0.7424 Ricinus communis6468 456-475 XP_003539013 356541084 1 Glycine max 6469 8265 XP_003540676356544475 0.8768 Glycine max 6470 8266 XP_003539012 356541082 0.7183Glycine max 6471 8267 685-704 NP_001235161 351721419 1 Glycine max 64728268 XP_003548144 356559717 0.9705 Glycine max 6473 8269 XP_003548143356559715 0.7785 Glycine max 6474 8270 BAB86923 19911192 0.711 Vignaangularis 6475 8271 685-704 NP_001235161 351721419 1 Glycine max 64768272 3330-3349 XP_003551446 356566453 1 Glycine max 6477 347-366XP_003540896 356544921 1 Glycine max 6478 8273 XP_003533477 3565298020.7278 Glycine max 6479 8274 XP_003607171 357473772 0.8086 Medicagotruncatula 6480 8275 XP_002533189 255761086 0.7412 Ricinus communis 6481XP_002279051 225428040 0.7305 Vitis vinifera 6482 8276 XP_003522637356507769 0.7466 Glycine max 6483 8277 XP_003526942 356516520 0.7035Glycine max 6484 8278  88-107 XP_002533189 255761086 1 Ricinus communis6485 XP_003540896 356544921 0.7035 Glycine max 6486 8279 XP_002270345225457886 0.7008 Vitis vinifera 6487 8280 589-608 XP_003518505 3564993511 Glycine max 6488 8281 75-94 XP_002312957 255761085 1 Populustrichocarpa 6489 XP_002306186 255761085 0.9181 Populus trichocarpa 6490CAN67732 147790359 0.8836 Vitis vinifera 6491 8282 682-701 XP_003556840356577453 1 Glycine max 6492 8283 XP_003519003 356500365 0.7261 Glycinemax 6493 8284 XP_003542320 356547854 0.7261 Glycine max 6494 8285220-239 XP_003527967 356518600 1 Glycine max 6495 8286 XP_003523399356509321 0.7599 Glycine max 6496 8287 1834-1853 XP_003539709 3565425081 Glycine max 6497 8288 XP_003538207 356539441 0.9136 Glycine max 64988289 XP_003606389 357472208 0.8066 Medicago truncatula 6499 8290NP_001238028 351722912 0.7617 Glycine max 6500 8291 XP_003543464356550174 0.7375 Glycine max 6501 8292 XP_003539710 356542510 0.8394Glycine max 6502 8293 XP_002530284 255761086 0.7081 Ricinus communis6503  0-19 AES82704 357512394 1 Medicago truncatula 6504 XP_003521781356506009 0.8339 Glycine max 6505 CBI28651 270241399 0.747 Vitisvinifera 6506 XP_002267871 225430630 0.7263 Vitis vinifera 6507XP_003553769 356571203 0.8332 Glycine max 6508 1104-1123 XP_003518991356500340 1 Glycine max 6509 8294 XP_003535145 356533178 0.8841 Glycinemax 6510 8295 XP_003535146 356533180 0.8509 Glycine max 6511 8296439-458 XP_003526441 356515505 1 Glycine max 6512 8297 XP_003522648356507791 0.9351 Glycine max 6513 8298 XP_003522647 356507789 0.8643Glycine max 6514 8299 XP_002284618 225430104 0.7935 Vitis vinifera 65158300 XP_003526440 356515503 0.8525 Glycine max 6516 8301 XP_002284775225445329 0.7788 Vitis vinifera 6517 8302 XP_002515572 255761086 0.7699Ricinus communis 6518 AES73734 357466396 0.7876 Medicago truncatula 65198303 1245-1264 NP_001238286 351722970 1 Glycine max 6520 8304 BAG72094207367147 0.9584 Glycine max 6521 8305 ACE79196 190586158 0.9558 Glycinemax 6522 8306 ACE79197 190586160 0.9019 Glycine max 6523 8307XP_003555766 356575272 0.8983 Glycine max 6524 8308 P93673 0.8453Lathyrus sativus 6525 P15001 0.8453 Pisum sativum 6526 AES61525357441992 0.8426 Medicago truncatula 6527 8309 XP_002278610 2254504040.7772 Vitis vinifera 6528 8310 ACC60969 183239021 0.7763 Vitis riparia6529 177-196 XP_002306186 255761085 1 Populus trichocarpa 6530XP_002312957 255761085 0.7553 Populus trichocarpa 6531 439-458XP_003522648 356507791 1 Glycine max 6532 8311 XP_003526441 3565155050.9351 Glycine max 6533 8312 NP_189078 42565156 0.7168 Arabidopsisthaliana 6534 8313 200-219 XP_003597608 357454654 1 Medicago truncatula6535 8314 ABN08398 357454654 1 Medicago truncatula 6536 8315XP_003546676 356556729 0.8954 Glycine max 6537 8316 XP_003543598356550445 0.8942 Glycine max 6538 8317 XP_003531618 356526020 0.8609Glycine max 6539 8318 XP_003529875 356522481 0.8537 Glycine max 65408319 CAA07236 316995680 0.849 Cicer arietinum 6541 8320 ABK96254118488889 0.8121 Populus trichocarpa × 6542 8321 Populus deltoidesCAC44500 14970838 0.8157 Fragaria × ananassa 6543 8322 XP_002327432255761085 0.8109 Populus trichocarpa 6544 ABV32545 157313303 0.824Prunus persica 6545 8323 20-39 XP_003538511 356540064 1 Glycine max 6546XP_003540789 356544707 0.9546 Glycine max 6547 AES88424 357471884 0.8454Medicago truncatula 6548 XP_002328167 255761085 0.78 Populus trichocarpa6549 XP_002529065 255761086 0.7791 Ricinus communis 6550 XP_002269920225436294 0.7732 Vitis vinifera 6551 1726-1745 XP_003538207 356539441 1Glycine max 6552 8324 XP_003539709 356542508 0.901 Glycine max 6553 8325AES88586 357472208 0.8038 Medicago truncatula 6554 8326 XP_003538208356539443 0.8362 Glycine max 6555 8327 ath- 137-156 XP_003540953356545038 1 Glycine max 6556 8328 miRf10763- XP_003537828 3565386770.9174 Glycine max 6557 8329 akr 246-265 ACU17625 255634523 1 Glycinemax 6558 8330 XP_003520499 356503402 0.9227 Glycine max 6559 8331XP_003554133 356571948 0.8886 Glycine max 6560 8332 448-467 XP_003555015356573740 1 Glycine max 6561 8333 145-164 XP_002267145 225438252 1 Vitisvinifera 6562 8334 XP_003517356 356497006 0.8121 Glycine max 6563 8335XP_003539260 356541595 0.8166 Glycine max 6564 8336 XP_003611551357482528 0.7919 Medicago truncatula 6565 8337 NP_566927 42565786 0.7696Arabidopsis thaliana 6566 8338 XP_002877705 297853636 0.774 Arabidopsislyrata 6567 subsp. lyrata XP_002285420 225458889 0.8076 Vitis vinifera6568 8339 AAM61258 21403407 0.7673 Arabidopsis thaliana 6569 8340NP_201393 30698164 0.7405 Arabidopsis thaliana 6570 8341 AAL3255417064799 0.7383 Arabidopsis thaliana 6571 8342 523-542 XP_003524815356512212 1 Glycine max 6572 8343 356528136 0.981 Glycine max 6573136-155 XP_003520083 356502552 1 Glycine max 6574 8344 XP_003517797356497905 0.8522 Glycine max 6575 8345  993-1012 AET34792 356650815 1Pisum sativum 6576 8346 AET34790 356650811 0.9979 Pisum sativum 65778347 AET34786 356650803 0.9358 Medicago truncatula 6578 8348XP_003625012 357509446 0.9337 Medicago truncatula 6579 8349 AET34796356650823 0.8654 Glycine max 6580 8350 XP_003521136 356504705 0.8551Glycine max 6581 8351 AEM62768 343794555 0.8778 Lotus japonicus 65828352 XP_002275980 225441316 0.8282 Vitis vinifera 6583 8353 CAN80112147852377 0.8282 Vitis vinifera 6584 8354 XP_002308905 255761085 0.824Populus trichocarpa 6585 223-242 XP_003520499 356503402 1 Glycine max6586 8355 ACU17625 255634523 0.9878 Glycine max 6587 8356 217-236XP_003526336 356515293 1 Glycine max 6588 8357 XP_003540834 3565447970.7611 Glycine max 6589 8358 241-260 XP_003519685 356501746 1 Glycinemax 6590 8359 ACU23918 255646896 0.9948 Glycine max 6591 8360XP_003545065 356553441 0.8093 Glycine max 6592 8361 26-45 CBI33098270247736 1 Vitis vinifera 6593 8362 237-256 AAF73257 8132346 1 Pisumsativum 6594 8363 XP_003523778 356510099 0.9489 Glycine max 6595 8364XP_003527981 356518628 0.9382 Glycine max 6596 8365 CAN70091 1237012990.8817 Vitis vinifera 6597 8366 Q40517 0.8817 Nicotiana tabacum 6598NP_001233761 350539780 0.8737 Solanum lycopersicum 6599 8367 Q408840.8737 Petunia × hybrida 6600 XP_002302017 255761085 0.871 Populustrichocarpa 6601 XP_002510434 255761086 0.8737 Ricinus communis 6602360-379 XP_003539534 356542151 1 Glycine max 6603 8368 XP_003543335356549913 0.8571 Glycine max 6604 8369 26-45 XP_003601902 357463240 1Medicago truncatula 6605 8370 XP_003538598 356540240 0.8571 Glycine max6606 8371 XP_003551994 356567575 0.8521 Glycine max 6607 8372XP_003531333 356525440 0.8045 Glycine max 6608 8373 XP_003525038356512665 0.797 Glycine max 6609 8374 XP_002530039 255761086 0.7845Ricinus communis 6610 XP_002314593 255761085 0.7694 Populus trichocarpa6611 XP_002282407 225424658 0.7669 Vitis vinifera 6612 8375 XP_002311761255761085 0.7669 Populus trichocarpa 6613 CBI16790 270228074 0.7569Vitis vinifera 6614 502-521 NP_001234991 351723886 1 Glycine max 66158376 XP_003552315 356568227 0.9954 Glycine max 6616 8377 XP_003543429356550102 0.9815 Glycine max 6617 8378 NP_001236946 351721215 0.9769Glycine max 6618 8379 XP_003596822 357453090 0.9444 Medicago truncatula6619 8380 XP_003611340 357482108 0.9444 Medicago truncatula 6620 8381XP_003600923 357461282 0.9444 Medicago truncatula 6621 8382 NP_001237030351723638 0.9306 Glycine max 6622 8383 ACG24758 195605855 0.875 Zea mays6623 8384 ACG33436 195623211 0.875 Zea mays 6624 8385 129-148 ACU17625255634523 1 Glycine max 6625 8386 290-309 XP_003548849 356561151 1Glycine max 6626 8387 XP_003519868 356502117 0.8445 Glycine max 66278388 XP_003629318 357518058 0.7456 Medicago truncatula 6628 8389 237-256XP_003527981 356518628 1 Glycine max 6629 8390 AAF73257 8132346 0.9407Pisum sativum 6630 8391 ABA00652 74231015 0.8814 Gossypium hirsutum 66318392 37-56 XP_003547100 356557592 1 Glycine max 6632 8393 XP_003541782356546742 0.862 Glycine max 6633 8394 XP_003593272 357445988 0.7085Medicago truncatula 6634 8395 248-267 ACU23918 255646896 1 Glycine max6635 8396 XP_003519685 356501746 0.9948 Glycine max 6636 8397 ath-757-777 XP_003629993 357519408 1 Medicago truncatula 6637 8398miRf11042- ACJ84083 217071445 0.9917 Medicago truncatula 6638 8399 akrNP_001235375 351727608 0.8595 Glycine max 6639 8400 NP_001237170351727706 0.8264 Glycine max 6640 8401 CAA10134 3860332 0.8347 Cicerarietinum 6641 8402 XP_002298184 255761085 0.719 Populus trichocarpa6642 NP_001237531 351723330 0.7107 Glycine max 6643 8403 XP_003523409356509341 0.7107 Glycine max 6644 8404 357519363 1 Medicago truncatula6645 361-381 XP_003592180 357443804 1 Medicago truncatula 6646 8405XP_003556131 356576015 0.7984 Glycine max 6647 8406 XP_003535589356534086 0.8 Glycine max 6648 8407 XP_002329680 255761085 0.777 Populustrichocarpa 6649 XP_002276766 225464654 0.7475 Vitis vinifera 6650 8408CBI22616 270233919 0.7213 Vitis vinifera 6651 8409 1042-1062XP_003616507 357492436 1 Medicago truncatula 6652 8410 XP_003518398356499134 0.8512 Glycine max 6653 8411 XP_003545247 356553814 0.8492Glycine max 6654 8412 XP_003537472 356537955 0.7738 Glycine max 66558413 XP_003552860 356569339 0.7718 Glycine max 6656 8414 XP_002524242255761086 0.7321 Ricinus communis 6657 XP_002277622 225449359 0.7063Vitis vinifera 6658 8415 520-540 XP_003534554 356531980 1 Glycine max6659 XP_003552402 356568406 0.9572 Glycine max 6660 XP_003548671356560791 0.7736 Glycine max 6661 XP_003528847 356520393 0.7732 Glycinemax 6662 XP_003623999 357507420 0.7898 Medicago truncatula 6663XP_003627563 357514548 0.7385 Medicago truncatula 6664 XP_002276245225454279 0.7367 Vitis vinifera 6665 XP_002511882 255761086 0.7349Ricinus communis 6666 CAN74059 147789689 0.7228 Vitis vinifera 66671412-1432 XP_003556131 356576015 1 Glycine max 6668 8416 XP_003592180357443804 0.8203 Medicago truncatula 6669 8417 csi- 43-66 XP_003547789356558998 1 Glycine max 6670 8418 miR3948 XP_003531955 356526700 0.9164Glycine max 6671 8419 ACU23577 255646183 0.9078 Glycine max 6672 8420209-232 XP_003540784 356544697 1 Glycine max 6673 8421 XP_003539180356541429 0.8869 Glycine max 6674 8422 40-63 XP_003556473 356576709 1Glycine max 6675 8423 XP_003535369 356533638 0.8958 Glycine max 66768424 47-70 XP_003527776 356518214 1 Glycine max 6677 8425  77-100XP_003550061 356563623 1 Glycine max 6678 8426 XP_003525811 3565142330.9621 Glycine max 6679 8427 XP_002310135 255761085 0.7098 Populustrichocarpa 6680 XP_002523601 255761086 0.7035 Ricinus communis 6681173-196 XP_003525811 356514233 1 Glycine max 6682 8428 XP_003550061356563623 0.9591 Glycine max 6683 8429 208-231 XP_003542594 356548408 1Glycine max 6684 8430 XP_003537062 356537086 0.7495 Glycine max 66858431 179-202 XP_003539180 356541429 1 Glycine max 6686 8432 XP_003540784356544697 0.8923 Glycine max 6687 8433 209-232 BAD18437 47077005 1 Homosapiens 6688 8434 XP_003522605 356507705 1 Glycine max 6689 8435XP_003526400 356515423 0.9316 Glycine max 6690 8436 232-255 XP_003537062356537086 1 Glycine max 6691 8437 XP_003542594 356548408 0.7416 Glycinemax 6692 8438 ghr- 37-57 XP_003518096 356498514 1 Glycine max 6693 8439miR2950 XP_003537196 356537360 0.9379 Glycine max 6694 8440 XP_003516696356495666 0.7495 Glycine max 6695 8441 909-929 XP_003529456 356521627 1Glycine max 6696 8442 XP_003556690 356577148 0.8891 Glycine max 66978443 XP_003601600 357462636 0.8073 Medicago truncatula 6698 8444XP_003601595 357462626 0.8073 Medicago truncatula 6699 8445 XP_003601599357462634 0.8073 Medicago truncatula 6700 8446 XP_003601596 3574626280.8036 Medicago truncatula 6701 8447 XP_003607816 357475060 0.7764Medicago truncatula 6702 8448 XP_003601601 357462638 0.7982 Medicagotruncatula 6703 8449 XP_003538519 356540080 0.7436 Glycine max 6704 8450XP_002303974 255761085 0.7491 Populus trichocarpa 6705 1446-1466BAG68945 197209811 1 Lotus japonicus 6706 8451 XP_003549436 3565623520.881 Glycine max 6707 8452 AAC09468 6503252 0.8541 Pisum sativum 67088453 XP_003541616 356546403 0.8824 Glycine max 6709 8454 XP_003610109357479646 0.8598 Medicago truncatula 6710 8455 XP_002270732 2254460430.8116 Vitis vinifera 6711 8456 ACN54324 224551851 0.7805 Gossypiumhirsutum 6712 8457 AAK15261 13183565 0.7748 Populus trichocarpa × 67138458 Populus deltoides CBI17838 270228824 0.7734 Vitis vinifera 6714XP_002324469 255761085 0.7677 Populus trichocarpa 6715 177-197XP_003554852 356573405 1 Glycine max 6716 8459 XP_003543493 3565502340.8998 Glycine max 6717 8460 461-481 XP_003536297 356535528 1 Glycinemax 6718 8461 XP_003556292 356576342 0.9205 Glycine max 6719 8462238-258 XP_003518581 356499506 1 Glycine max 6720 8463 XP_003618091357495604 0.7113 Medicago truncatula 6721 8464 gma- 75-94 XP_003520455356503312 1 Glycine max 6722 8465 miR156g XP_003530170 356523079 0.848Glycine max 6723 8466 371-390 XP_003553428 356570509 1 Glycine max 67248467 XP_003520534 356503475 0.9081 Glycine max 6725 8468 759-778XP_003520534 356503475 1 Glycine max 6726 8469 XP_003553428 3565705090.9081 Glycine max 6727 8470 108-127 XP_003553944 356571558 1 Glycinemax 6728 8471 XP_003549130 356561725 0.9452 Glycine max 6729 8472237-256 XP_003551188 356565928 1 Glycine max 6730 8473 XP_003538544356540131 0.9106 Glycine max 6731 8474 ACU18328 255635963 0.9083 Glycinemax 6732 8475 XP_003601767 357462970 0.7064 Medicago truncatula 67338476 36-55 AAM12880 20149261 1 Helianthus annuus 6734 8477 CBI28152270240501 0.991 Vitis vinifera 6735 XP_002284967 225430201 0.991 Vitisvinifera 6736 8478 CBI21000 270231236 0.991 Vitis vinifera 6737 CBI36254270253379 0.9819 Vitis vinifera 6738 8479 NP_200330 145359269 0.9864Arabidopsis thaliana 6739 8480 XP_003522628 356507751 0.9819 Glycine max6740 8481 AEM97804 344189954 0.9864 Dimocarpus longan 6741 8482XP_002864382 297853636 0.9864 Arabidopsis lyrata 6742 subsp. lyrataXP_002285307 225442824 0.9819 Vitis vinifera 6743 8483 1020-1039XP_003532399 356527605 1 Glycine max 6744 8484 XP_003525415 3565134260.8914 Glycine max 6745 8485 114-133 ACU18105 255635506 1 Glycine max6746 8486 756-775 XP_003518080 356498481 1 Glycine max 6747 8487XP_003551421 356566402 0.8408 Glycine max 6748 8488 118-137 XP_003549130356561725 1 Glycine max 6749 8489 XP_003553944 356571558 0.9452 Glycinemax 6750 8490 662-681 XP_003550514 356564545 1 Glycine max 6751 8491XP_003528668 356520027 0.9389 Glycine max 6752 8492 XP_003541638356546447 0.8242 Glycine max 6753 8493 XP_003547234 356557871 0.808Glycine max 6754 8494 XP_003594096 357447640 0.803 Medicago truncatula6755 8495 XP_002279739 225432499 0.7382 Vitis vinifera 6756 8496CAN70618 147801938 0.7406 Vitis vinifera 6757 8497 XP_002314424255761085 0.7406 Populus trichocarpa 6758 XP_002516799 255761086 0.7219Ricinus communis 6759 XP_002312735 255761085 0.7157 Populus trichocarpa6760 691-710 XP_003525415 356513426 1 Glycine max 6761 8498 XP_003532399356527605 0.9051 Glycine max 6762 8499 114-133 XP_003538544 356540131 1Glycine max 6763 8500 XP_003551188 356565928 0.9097 Glycine max 67648501 1068-1087 XP_003525436 356513468 1 Glycine max 6765 8502XP_003550708 356564947 0.9204 Glycine max 6766 8503 XP_003522278356507037 0.7595 Glycine max 6767 8504  999-1018 XP_003550708 3565649471 Glycine max 6768 8505 XP_003525436 356513468 0.9373 Glycine max 67698506 1098-1117 XP_003520128 356502644 1 Glycine max 6770 8507XP_003517860 356498034 0.9129 Glycine max 6771 8508 179-198 XP_003523155356508826 1 Glycine max 6772 8509 711-730 XP_003551421 356566402 1Glycine max 6773 8510 XP_003518080 356498481 0.7962 Glycine max 67748511 gma- 164-183 XP_003549130 356561725 1 Glycine max 6775 8512 miR157cXP_003553944 356571558 0.9452 Glycine max 6776 8513 593-612 NP_001236309351724988 1 Glycine max 6777 8514 XP_003529339 356521389 0.838 Glycinemax 6778 8515 gma- 305-325 XP_003551790 356567161 1 Glycine max 67798516 miR159a- 305-325 XP_003541823 356546825 1 Glycine max 6780 8517 3p124-144 XP_003543825 356550908 1 Glycine max 6781 8518 XP_003556814356577399 0.813 Glycine max 6782 8519 405-425 XP_003542140 356547479 1Glycine max 6783 8520 XP_003546908 356557204 0.8696 Glycine max 67848521 305-325 XP_003541823 356546825 1 Glycine max 6785 8522 124-144XP_003543825 356550908 1 Glycine max 6786 8523 839-859 XP_003526354356515330 1 Glycine max 6787 8524 XP_003523913 356510372 0.9333 Glycinemax 6788 8525 73-93 XP_003535315 356533526 1 Glycine max 6789 8526XP_003555178 356574075 0.9462 Glycine max 6790 8527 XP_003591226357441896 0.7849 Medicago truncatula 6791 8528 XP_002512536 2557610860.7465 Ricinus communis 6792 CBI39621 270257428 0.7465 Vitis vinifera6793 8529 CAP59645 163913883 0.7558 Vitis vinifera 6794 8530XP_002277312 225450534 0.7496 Vitis vinifera 6795 8531 XP_002280462225432056 0.7404 Vitis vinifera 6796 8532 CAP59646 163913885 0.7512Vitis vinifera 6797 8533 CAN63178 123711273 0.7373 Vitis vinifera 67988534 614-634 XP_003541563 356546291 1 Glycine max 6799 8535 XP_003545791356554924 0.805 Glycine max 6800 8536 905-925 XP_003556814 356577399 1Glycine max 6801 8537 XP_003543825 356550908 0.8659 Glycine max 68028538 2016-2036 XP_003538988 356541033 1 Glycine max 6803 8539XP_003607189 357473808 0.7407 Medicago truncatula 6804 8540 XP_003604038357467506 0.7035 Medicago truncatula 6805 8541 926-946 XP_003545791356554924 1 Glycine max 6806 8542 XP_003541563 356546291 0.8662 Glycinemax 6807 8543 842-862 XP_003523913 356510372 1 Glycine max 6808 8544XP_003526354 356515330 0.9333 Glycine max 6809 8545 iba- 164-184XP_003549130 356561725 1 Glycine max 6810 8546 miR157 XP_003553944356571558 0.9452 Glycine max 6811 8547 238-258 XP_003551188 356565928 1Glycine max 6812 8548 XP_003538544 356540131 0.9106 Glycine max 68138549 ACU18328 255635963 0.9083 Glycine max 6814 8550 XP_003601767357462970 0.7064 Medicago truncatula 6815 8551 1129-1149 XP_003525415356513426 1 Glycine max 6816 8552 XP_003532399 356527605 0.9051 Glycinemax 6817 8553 898-918 XP_003540473 356544059 1 Glycine max 6818 8554XP_003543233 356549706 0.9305 Glycine max 6819 8555 ACU24116 2556472980.9251 Glycine max 6820 8556 118-138 XP_003525436 356513468 1 Glycinemax 6821 8557 XP_003550708 356564947 0.9204 Glycine max 6822 8558XP_003522278 356507037 0.7595 Glycine max 6823 8559 77-97 XP_003520455356503312 1 Glycine max 6824 8560 XP_003530170 356523079 0.848 Glycinemax 6825 8561 498-518 XP_003553428 356570509 1 Glycine max 6826 8562XP_003520534 356503475 0.9081 Glycine max 6827 8563 50-70 XP_003550708356564947 1 Glycine max 6828 8564 XP_003525436 356513468 0.9373 Glycinemax 6829 8565 170-190 XP_003538544 356540131 1 Glycine max 6830 8566XP_003551188 356565928 0.9097 Glycine max 6831 8567 593-613 NP_001236309351724988 1 Glycine max 6832 8568 XP_003529339 356521389 0.838 Glycinemax 6833 8569 144-164 XP_002275728 225446415 1 Vitis vinifera 6834 8570AAY16440 62856978 0.7396 Betula platyphylla 6835 8571 112-132XP_003522278 356507037 1 Glycine max 6836 8572 396-416 XP_003520128356502644 1 Glycine max 6837 8573 XP_003517860 356498034 0.9129 Glycinemax 6838 8574 181-201 XP_003523155 356508826 1 Glycine max 6839 857577-97 XP_003520455 356503312 1 Glycine max 6840 8576 373-393XP_003553428 356570509 1 Glycine max 6841 8577 761-781 XP_003520534356503475 1 Glycine max 6842 8578 XP_003553428 356570509 0.9081 Glycinemax 6843 8579 110-130 XP_003553944 356571558 1 Glycine max 6844 8580239-259 XP_003551188 356565928 1 Glycine max 6845 8581 1022-1042XP_003532399 356527605 1 Glycine max 6846 8582 XP_003525415 3565134260.8914 Glycine max 6847 8583 593-613 NP_001236309 351724988 1 Glycinemax 6848 8584 116-136 ACU18105 255635506 1 Glycine max 6849 8585 758-778XP_003518080 356498481 1 Glycine max 6850 8586 XP_003551421 3565664020.8408 Glycine max 6851 8587 120-140 XP_003549130 356561725 1 Glycinemax 6852 8588 693-713 XP_003525415 356513426 1 Glycine max 6853 8589656-676 XP_003517558 356497418 1 Glycine max 6854 8590 XP_003537666356538348 0.9182 Glycine max 6855 8591 XP_003539001 356541059 0.7453Glycine max 6856 8592 XP_003540042 356543182 0.7421 Glycine max 68578593 116-136 XP_003538544 356540131 1 Glycine max 6858 8594 1070-1090XP_003525436 356513468 1 Glycine max 6859 8595 404-424 XP_003526029356514674 1 Glycine max 6860 8596 XP_003540122 356543345 0.8919 Glycinemax 6861 8597 1100-1120 XP_003520128 356502644 1 Glycine max 6862 85981001-1021 XP_003550708 356564947 1 Glycine max 6863 8599 243-263XP_003540122 356543345 1 Glycine max 6864 8600 XP_003526029 3565146740.8684 Glycine max 6865 8601 555-575 XP_003524444 356511459 1 Glycinemax 6866 8602 XP_003533073 356528975 0.7951 Glycine max 6867 8603181-201 XP_003523155 356508826 1 Glycine max 6868 8604 713-733XP_003551421 356566402 1 Glycine max 6869 8605 XP_003518080 3564984810.7962 Glycine max 6870 8606 mdm- 517-537 XP_003528897 356520494 1Glycine max 6871 8607 miR482a- ACU19201 255637757 0.988 Glycine max 68728608 5p XP_003529981 356522693 0.7784 Glycine max 6873 8609 XP_003521936356506325 0.7695 Glycine max 6874 8610 626-646 XP_003554327 356572340 1Glycine max 6875 8611 XP_003521338 356505115 0.984 Glycine max 6876 8612XP_003554326 356572338 1 Glycine max 6877 8613 XP_003521337 3565051130.984 Glycine max 6878 8614 AES81717 357510420 0.869 Medicago truncatula6879 8615 ACJ84304 217071887 0.8658 Medicago truncatula 6880 8616ABN05708 46063642 0.8594 Medicago truncatula 6881 8617 AES84650339649035 0.8339 Medicago truncatula 6882 8618 XP_003542462 3565481410.8115 Glycine max 6883 8619 XP_003542461 356548139 0.8115 Glycine max6884 8620 204-224 XP_003625987 357511396 1 Medicago truncatula 6885 8621AES82205 357511396 1 Medicago truncatula 6886 8622 XP_003520757356503939 0.8043 Glycine max 6887 8623 XP_003554555 356572802 0.802Glycine max 6888 8624 175-195 XP_003554555 356572802 1 Glycine max 68898625 XP_002271147 225437597 0.7397 Vitis vinifera 6890 8626 XP_002515261255761086 0.7188 Ricinus communis 6891 716-736 XP_003539613 356542313 1Glycine max 6892 8627 XP_003543221 356549682 0.8767 Glycine max 68938628 778-798 XP_003625499 357510420 1 Medicago truncatula 6894 8629XP_003554327 356572340 0.8395 Glycine max 6895 8630 XP_003537175356537316 0.8056 Glycine max 6896 8631 osa- 500-520 XP_003541668356546507 1 Glycine max 6897 8632 miR159e XP_003547199 356557800 0.8383Glycine max 6898 8633 495-515 XP_003524148 356510852 1 Glycine max 68998634 XP_003531162 356525093 0.7762 Glycine max 6900 8635 26-46XP_003547199 356557800 1 Glycine max 6901 8636 124-144 XP_003543825356550908 1 Glycine max 6902 8637 XP_003556814 356577399 0.813 Glycinemax 6903 8638 817-837 XP_003525997 356514606 1 Glycine max 6904 8639XP_003540066 356543230 0.8441 Glycine max 6905 8640 289-309 XP_003518627356499601 1 Glycine max 6906 8641 XP_003542153 356547506 0.9478 Glycinemax 6907 8642 ADN33938 307136081 0.7937 Cucumis melo 6908 8643 subsp.melo XP_002518919 255761086 0.7755 Ricinus communis 6909 XP_002279642225426567 0.7755 Vitis vinifera 6910 8644 XP_002870592 297853636 0.7664Arabidopsis lyrata 6911 subsp. lyrata NP_199024 30693991 0.7642Arabidopsis thaliana 6912 8645 AAM63843 21405504 0.7596 Arabidopsisthaliana 6913 8646 XP_002299422 255761085 0.7528 Populus trichocarpa6914 XP_002303695 255761085 0.7574 Populus trichocarpa 6915 124-144XP_003543825 356550908 1 Glycine max 6916 8647 461-481 XP_003542153356547506 1 Glycine max 6917 8648 XP_003518627 356499601 0.9436 Glycinemax 6918 8649 1162-1182 XP_003531162 356525093 1 Glycine max 6919 8650XP_003524148 356510852 0.7692 Glycine max 6920 8651 839-859 XP_003526354356515330 1 Glycine max 6921 8652 XP_003523913 356510372 0.9333 Glycinemax 6922 8653 495-515 XP_003524148 356510852 1 Glycine max 6923 8654949-969 XP_003547199 356557800 1 Glycine max 6924 8655 614-634XP_003541563 356546291 1 Glycine max 6925 8656 XP_003545791 3565549240.805 Glycine max 6926 8657 905-925 XP_003556814 356577399 1 Glycine max6927 8658 XP_003543825 356550908 0.8659 Glycine max 6928 8659 2016-2036XP_003538988 356541033 1 Glycine max 6929 8660 XP_003607189 3574738080.7407 Medicago truncatula 6930 8661 XP_003604038 357467506 0.7035Medicago truncatula 6931 8662 1330-1350 XP_003541668 356546507 1 Glycinemax 6932 8663 842-862 XP_003523913 356510372 1 Glycine max 6933 8664XP_003526354 356515330 0.9333 Glycine max 6934 8665 926-946 XP_003545791356554924 1 Glycine max 6935 8666 XP_003541563 356546291 0.8662 Glycinemax 6936 8667 osa- 124-144 XP_003543825 356550908 1 Glycine max 69378668 miR159f XP_003556814 356577399 0.813 Glycine max 6938 8669 305-325XP_003541823 356546825 1 Glycine max 6939 8670 124-144 XP_003543825356550908 1 Glycine max 6940 8671 839-859 XP_003526354 356515330 1Glycine max 6941 8672 XP_003523913 356510372 0.9333 Glycine max 69428673 614-634 XP_003541563 356546291 1 Glycine max 6943 8674 XP_003545791356554924 0.805 Glycine max 6944 8675 905-925 XP_003556814 356577399 1Glycine max 6945 8676 2016-2036 XP_003538988 356541033 1 Glycine max6946 8677 XP_003607189 357473808 0.7407 Medicago truncatula 6947 8678XP_003604038 357467506 0.7035 Medicago truncatula 6948 8679 842-862XP_003523913 356510372 1 Glycine max 6949 8680 XP_003526354 3565153300.9333 Glycine max 6950 8681 926-946 XP_003545791 356554924 1 Glycinemax 6951 8682 XP_003541563 356546291 0.8662 Glycine max 6952 8683 osa-796-816 ABC49719 84028520 1 Arachis hypogaea 6953 8684 miR1850.1NP_001236448 351734389 0.9568 Glycine max 6954 8685 XP_003535034356532953 0.9496 Glycine max 6955 8686 XP_003594440 357448328 0.8993Medicago truncatula 6956 8687 ACJ84098 217071475 0.8921 Medicagotruncatula 6957 8688 XP_003629907 357519236 0.8705 Medicago truncatula6958 8689 ABD63906 89212811 0.8921 Gossypium hirsutum 6959 8690 ABD6650589276296 0.8849 Gossypium hirsutum 6960 8691 ADN34239 307136431 0.8633Cucumis melo 6961 8692 subsp. melo ABD66508 89276302 0.8849 Gossypiumhirsutum 6962 8693 746-766 XP_003535034 356532953 1 Glycine max 69638694 CAJ38384 106879600 0.8849 Plantago major 6964 8695 XP_002299887255761085 0.9065 Populus trichocarpa 6965 17-37 XP_003534041 356530948 1Glycine max 6966 8696 117-137 XP_003524950 356512486 1 Glycine max 69678697 243-263 XP_003548988 356561437 1 Glycine max 6968 8698 XP_003548995356561451 0.7944 Glycine max 6969 8699 XP_003548992 356561445 0.728Glycine max 6970 8700 XP_003548994 356561449 0.7846 Glycine max 69718701 XP_003548993 356561447 0.921 Glycine max 6972 8702 XP_003548986356561433 0.8079 Glycine max 6973 8703 XP_003548991 356561443 0.807Glycine max 6974 8704 XP_003617757 357494936 0.8241 Medicago truncatula6975 8705 XP_003616414 357492250 0.7971 Medicago truncatula 6976 870653-73 XP_003552127 356567847 1 Glycine max 6977 8707 XP_003532277356527355 0.9545 Glycine max 6978 8708 ADB79567 284156655 0.7995 Arachishypogaea 6979 8709 XP_002262721 225470104 0.7433 Vitis vinifera 69808710 ABX82799 296916970 0.7219 Jatropha curcas 6981 8711 XP_002532744255761086 0.7166 Ricinus communis 6982 XP_002863277 297853636 0.7112Arabidopsis lyrata 6983 subsp. lyrata AAC49002 595956 0.7059 Brassicarapa 6984 8712 141-161 XP_003555849 356575439 1 Glycine max 6985 8713XP_003592693 357444830 0.8289 Medicago truncatula 6986 8714 XP_002529805255761086 0.7425 Ricinus communis 6987 XP_002306206 255761085 0.7331Populus trichocarpa 6988 XP_002264823 225467465 0.7221 Vitis vinifera6989 8715 XP_002278507 225428128 0.719 Vitis vinifera 6990 8716XP_002312937 255761085 0.7159 Populus trichocarpa 6991 2940-2960XP_003550417 356564348 1 Glycine max 6992 8717 XP_003523561 3565096530.7407 Glycine max 6993 8718 XP_003523562 356509655 0.7323 Glycine max6994 8719 osa-  90-110 XP_003520359 356503118 1 Glycine max 6995 8720miR1858a XP_003547751 356558921 0.94 Glycine max 6996 8721 AES83637339648991 0.7389 Medicago truncatula 6997 XP_003522288 356507057 0.7176Glycine max 6998 8722 XP_003604071 357467572 0.706 Medicago truncatula6999 8723 24-44 XP_003553781 356571227 1 Glycine max 7000 8724NP_001235053 351725668 0.8396 Glycine max 7001 8725 BAF49302 1338741970.7167 Clitoria ternatea 7002 8726 364-384 XP_003554024 356571724 1Glycine max 7003 8727 XP_003554025 356571726 0.9937 Glycine max 70048728 XP_003548728 356560906 0.9669 Glycine max 7005 8729 XP_003624635357508692 0.8873 Medicago truncatula 7006 8730 XP_002285720 2254357530.8202 Vitis vinifera 7007 8731 XP_002281591 225441588 0.8229 Vitisvinifera 7008 8732 XP_003531251 356525273 0.8157 Glycine max 7009 8733XP_002304857 255761085 0.797 Populus trichocarpa 7010 XP_002299105255761085 0.7898 Populus trichocarpa 7011 XP_003629733 357518888 0.7987Medicago truncatula 7012 8734 345-365 XP_003548728 356560906 1 Glycinemax 7013 8735 XP_003554024 356571724 0.9704 Glycine max 7014 8736 24-44XP_003553781 356571227 1 Glycine max 7015 8737 56-76 XP_003521247356504932 1 Glycine max 7016 8738 XP_003554255 356572193 0.9395 Glycinemax 7017 8739 XP_002520726 255761086 0.7893 Ricinus communis 7018XP_002278267 225437025 0.8136 Vitis vinifera 7019 8740 XP_002307588255761085 0.7966 Populus trichocarpa 7020 XP_002892149 297853636 0.7215Arabidopsis lyrata 7021 subsp. lyrata NP_563676 30678481 0.7361Arabidopsis thaliana 7022 8741 360-380 NP_001237118 351726189 1 Glycinemax 7023 8742 XP_003556230 356576216 0.9243 Glycine max 7024 8743XP_002529571 255761086 0.7775 Ricinus communis 7025 XP_002315301255761085 0.7706 Populus trichocarpa 7026 XP_002275232 225449067 0.7752Vitis vinifera 7027 8744 XP_002312018 255761085 0.7569 Populustrichocarpa 7028 ACM45079 222136858 0.7729 Vitis vinifera 7029 8745XP_002894135 297853636 0.7729 Arabidopsis lyrata 7030 subsp. lyrataABA54870 76782199 0.7638 Fagus sylvatica 7031 8746 CAN73646 1236932640.7706 Vitis vinifera 7032 277-297 XP_003591923 357443290 1 Medicagotruncatula 7033 8747 180-200 XP_003524517 356511610 1 Glycine max 70348748 XP_003549799 356563090 0.9173 Glycine max 7035 8749 564-584NP_001235053 351725668 1 Glycine max 7036 8750 XP_003553781 3565712270.8319 Glycine max 7037 8751 XP_003626556 357512534 0.7059 Medicagotruncatula 7038 8752 ACJ85806 217074891 0.7017 Medicago truncatula 70398753 369-389 XP_003530234 356523208 1 Glycine max 7040 8754 XP_003551508356566578 0.9298 Glycine max 7041 8755 188-208 XP_002529571 255761086 1Ricinus communis 7042 NP_564534 145336530 0.8046 Arabidopsis thaliana7043 8756 AAG50662 12321108 0.8023 Arabidopsis thaliana 7044 8757378-398 XP_003551508 356566578 1 Glycine max 7045 8758 XP_003530234356523208 0.8745 Glycine max 7046 8759 231-251 XP_003528545 356519775 1Glycine max 7047 8760 XP_003556667 356577102 0.9204 Glycine max 70488761 XP_003607899 357475226 0.7898 Medicago truncatula 7049 8762 156-176XP_003547641 356558699 1 Glycine max 7050 8763 XP_003548802 3565610570.9768 Glycine max 7051 8764 141-161 XP_003543554 356550357 1 Glycinemax 7052 8765 XP_003554155 356571993 0.932 Glycine max 7053 8766 180-200XP_003549799 356563090 1 Glycine max 7054 8767 XP_003524517 3565116100.9176 Glycine max 7055 8768 192-212 XP_003531267 356525308 1 Glycinemax 7056 8769 XP_003624841 357509104 0.7936 Medicago truncatula 70578770 XP_003522101 356506673 0.7277 Glycine max 7058 8771 132-152XP_003556667 356577102 1 Glycine max 7059 8772 XP_003528545 3565197750.9129 Glycine max 7060 8773 psi- 124-144 XP_003543825 356550908 1Glycine max 7061 8774 miR159 XP_003556814 356577399 0.813 Glycine max7062 8775 289-309 XP_003518627 356499601 1 Glycine max 7063 8776XP_003542153 356547506 0.9478 Glycine max 7064 8777 ADN33938 3071360810.7937 Cucumis melo 7065 8778 subsp. melo XP_002518919 255761086 0.7755Ricinus communis 7066 XP_002279642 225426567 0.7755 Vitis vinifera 70678779 XP_002870592 297853636 0.7664 Arabidopsis lyrata 7068 subsp. lyrataNP_199024 30693991 0.7642 Arabidopsis thaliana 7069 8780 AAM6384321405504 0.7596 Arabidopsis thaliana 7070 8781 XP_002299422 2557610850.7528 Populus trichocarpa 7071 XP_002303695 255761085 0.7574 Populustrichocarpa 7072 124-144 XP_003543825 356550908 1 Glycine max 7073 8782461-481 XP_003542153 356547506 1 Glycine max 7074 8783 XP_003518627356499601 0.9436 Glycine max 7075 8784 839-859 XP_003526354 356515330 1Glycine max 7076 8785 XP_003523913 356510372 0.9333 Glycine max 70778786 614-634 XP_003541563 356546291 1 Glycine max 7078 8787 XP_003545791356554924 0.805 Glycine max 7079 8788 905-925 XP_003556814 356577399 1Glycine max 7080 8789 19-39 NP_001236539 351724240 1 Glycine max 70818790 NP_001237767 351722762 0.9915 Glycine max 7082 8791 NP_001237736351721871 0.7778 Glycine max 7083 8792 BAF50740 139005586 0.7436 Apiosamericana 7084 8793 XP_003623947 357507316 0.7094 Medicago truncatula7085 8794 2016-2036 XP_003538988 356541033 1 Glycine max 7086 8795XP_003607189 357473808 0.7407 Medicago truncatula 7087 8796 XP_003604038357467506 0.7035 Medicago truncatula 7088 8797 926-946 XP_003545791356554924 1 Glycine max 7089 8798 XP_003541563 356546291 0.8662 Glycinemax 7090 8799 842-862 XP_003523913 356510372 1 Glycine max 7091 8800XP_003526354 356515330 0.9333 Glycine max 7092 8801 pta- 161-180XP_003549130 356561725 1 Glycine max 7093 8802 miR156a XP_003553944356571558 0.9452 Glycine max 7094 8803 106-125 XP_003520455 356503312 1Glycine max 7095 8804 XP_003530170 356523079 0.848 Glycine max 7096 8805115-134 XP_003525436 356513468 1 Glycine max 7097 8806 XP_003550708356564947 0.9204 Glycine max 7098 8807 XP_003522278 356507037 0.7595Glycine max 7099 8808 47-66 XP_003550708 356564947 1 Glycine max 71008809 XP_003525436 356513468 0.9373 Glycine max 7101 8810 495-514XP_003553428 356570509 1 Glycine max 7102 8811 XP_003520534 3565034750.9081 Glycine max 7103 8812 303-322 XP_003530747 356524258 1 Glycinemax 7104 XP_003553084 356569799 0.9116 Glycine max 7105 393-412XP_003520128 356502644 1 Glycine max 7106 8813 XP_003517860 3564980340.9129 Glycine max 7107 8814 109-128 XP_003522278 356507037 1 Glycinemax 7108 8815 178-197 XP_003523155 356508826 1 Glycine max 7109 8816755-774 XP_003518080 356498481 1 Glycine max 7110 8817 XP_003551421356566402 0.8408 Glycine max 7111 8818 117-136 XP_003549130 356561725 1Glycine max 7112 8819 734-753 XP_003553428 356570509 1 Glycine max 71138820 815-834 XP_003553944 356571558 1 Glycine max 7114 8821 121-140ACU18105 255635506 1 Glycine max 7115 8822 1067-1086 XP_003525436356513468 1 Glycine max 7116 8823 106-125 XP_003520455 356503312 1Glycine max 7117 8824 1097-1116 XP_003520128 356502644 1 Glycine max7118 8825  998-1017 XP_003550708 356564947 1 Glycine max 7119 8826178-197 XP_003523155 356508826 1 Glycine max 7120 8827 590-609NP_001236309 351724988 1 Glycine max 7121 8828 XP_003529339 3565213890.838 Glycine max 7122 8829 710-729 XP_003551421 356566402 1 Glycine max7123 8830 XP_003518080 356498481 0.7962 Glycine max 7124 8831 pta-161-180 XP_003549130 356561725 1 Glycine max 7125 8832 miR156bXP_003553944 356571558 0.9452 Glycine max 7126 8833 320-339 XP_003531511356525799 1 Glycine max 7127 8834 XP_003546792 356556969 0.7324 Glycinemax 7128 8835 115-134 XP_003525436 356513468 1 Glycine max 7129 8836XP_003550708 356564947 0.9204 Glycine max 7130 8837 XP_003522278356507037 0.7595 Glycine max 7131 8838 106-125 XP_003520455 356503312 1Glycine max 7132 8839 XP_003530170 356523079 0.848 Glycine max 7133 884047-66 XP_003550708 356564947 1 Glycine max 7134 8841 XP_003525436356513468 0.9373 Glycine max 7135 8842 495-514 XP_003553428 356570509 1Glycine max 7136 8843 XP_003520534 356503475 0.9081 Glycine max 71378844 396-415 ABW03160 157922334 1 Pisum sativum 7138 8845 XP_003546545356556463 0.9946 lipoamide 7139 8846 ACU19644 255638677 0.9919 Glycinemax 7140 8847 XP_003533815 356530492 0.9621 lipoamide 7141 8848 CAG1498045720177 0.8916 Cicer arietinum 7142 8849 ABW03161 157922336 0.8862Pisum sativum 7143 8850 XP_003595440 357450326 0.878 Medicago truncatula7144 8851 XP_002314330 255761085 0.8699 Populus trichocarpa 7145XP_003621874 357503170 0.8564 Medicago truncatula 7146 8852 XP_002267959225432170 0.8618 Vitis vinifera 7147 8853 1563-1582 XP_002526256255761086 1 Ricinus communis 7148 XP_002318437 255761085 0.9495 Populustrichocarpa 7149 XP_002276600 225455335 0.946 Vitis vinifera 7150 8854CBI23029 270234399 0.946 Vitis vinifera 7151 8855 XP_002515853 2557610860.9414 Ricinus communis 7152 XP_003530452 356523654 0.8886 Glycine max7153 8856 XP_003525330 356513256 0.884 Glycine max 7154 8857XP_002864245 297853636 0.8794 Arabidopsis lyrata 7155 subsp. lyrataNP_200160 42568511 0.876 Arabidopsis thaliana 7156 8858 BAJ93177326526000 0.8324 Hordeum vulgare 7157 8859 subsp. vulgare 393-412XP_003520128 356502644 1 Glycine max 7158 8860 XP_003517860 3564980340.9129 Glycine max 7159 8861 109-128 XP_003522278 356507037 1 Glycinemax 7160 8862 178-197 XP_003523155 356508826 1 Glycine max 7161 8863203-222 XP_003551276 356566105 1 Glycine max 7162 8864 XP_003538548356540139 0.9368 Glycine max 7163 8865 XP_003601783 357463002 0.8103Medicago truncatula 7164 8866 XP_003524894 356512372 0.7615 Glycine max7165 8867 XP_003531195 356525159 0.7759 Glycine max 7166 8868XP_002514915 255761086 0.7557 Ricinus communis 7167 XP_002297844255761085 0.7471 Populus trichocarpa 7168 XP_002304680 255761085 0.7414Populus trichocarpa 7169 XP_002271442 225425417 0.7098 Vitis vinifera7170 8869 74-93 XP_003520455 356503312 1 Glycine max 7171 8870 370-389XP_003553428 356570509 1 Glycine max 7172 8871 758-777 XP_003520534356503475 1 Glycine max 7173 8872 XP_003553428 356570509 0.9081 Glycinemax 7174 8873 107-126 XP_003553944 356571558 1 Glycine max 7175 887435-54 AAM12880 20149261 1 Helianthus annuus 7176 8875 CBI28152 2702405010.991 Vitis vinifera 7177 XP_002284967 225430201 0.991 Vitis vinifera7178 8876 CBI21000 270231236 0.991 Vitis vinifera 7179 CBI36254270253379 0.9819 Vitis vinifera 7180 8877 NP_200330 145359269 0.9864Arabidopsis thaliana 7181 8878 XP_003522628 356507751 0.9819 Glycine max7182 8879 AEM97804 344189954 0.9864 Dimocarpus longan 7183 8880XP_002864382 297853636 0.9864 Arabidopsis lyrata 7184 subsp. lyrataXP_002285307 225442824 0.9819 Vitis vinifera 7185 8881 1019-1038XP_003532399 356527605 1 Glycine max 7186 8882 XP_003525415 3565134260.8914 Glycine max 7187 8883 113-132 ACU18105 255635506 1 Glycine max7188 8884 755-774 XP_003518080 356498481 1 Glycine max 7189 8885XP_003551421 356566402 0.8408 Glycine max 7190 8886 117-136 XP_003549130356561725 1 Glycine max 7191 8887 690-709 XP_003525415 356513426 1Glycine max 7192 8888 XP_003532399 356527605 0.9051 Glycine max 71938889 1067-1086 XP_003525436 356513468 1 Glycine max 7194 8890 1097-1116XP_003520128 356502644 1 Glycine max 7195 8891  998-1017 XP_003550708356564947 1 Glycine max 7196 8892 178-197 XP_003523155 356508826 1Glycine max 7197 8893 467-486 XP_003610314 357480056 1 Medicagotruncatula 7198 8894 XP_003549541 356562566 0.8796 Glycine max 7199 8895XP_003519149 356500658 0.8728 Glycine max 7200 8896 XP_003540100356543299 0.8605 Glycine max 7201 8897 XP_002278464 225445858 0.8098Vitis vinifera 7202 8898 XP_002529385 255761086 0.8167 Ricinus communis7203 XP_002325129 255761085 0.7852 Populus trichocarpa 7204 NP_85120942570605 0.762 Arabidopsis thaliana 7205 8899 XP_002864540 2978536360.7579 Arabidopsis lyrata 7206 subsp. lyrata NP_974953 42573713 0.7565Arabidopsis thaliana 7207 8900 710-729 XP_003551421 356566402 1 Glycinemax 7208 8901 XP_003518080 356498481 0.7962 Glycine max 7209 8902 ptc-312-334 XP_003547131 356557655 1 Glycine max 7210 8903 miRf10226-XP_003541752 356546681 0.9148 Glycine max 7211 8904 akr 247-269XP_003542817 356548860 1 Glycine max 7212 8905 XP_003546711 3565568040.9141 Glycine max 7213 8906 AET02361 357515192 0.7607 Medicagotruncatula 7214 8907 131-153 XP_003523607 1 Glycine max 7215XP_003525906 0.9439 Glycine max 7216 106-128 XP_003549610 356562705 1Glycine max 7217 8908 XP_003529657 356522038 0.8762 Glycine max 72188909 161-183 XP_003525906 356514424 1 Glycine max 7219 8910 XP_003523607356509746 0.9381 Glycine max 7220 8911 ptc- 123-143 XP_003543825356550908 1 Glycine max 7221 8912 miRf10271- XP_003556814 3565773990.813 Glycine max 7222 8913 akr 423-443 XP_002325684 255761085 1 Populustrichocarpa 7223 XP_002319934 255761085 0.9342 Populus trichocarpa 7224ACU14088 255627486 0.8202 Glycine max 7225 8914 XP_003543368 3565499790.8114 Glycine max 7226 8915 NP_001237648 351726723 0.7982 Glycine max7227 8916 ACU20677 255640786 0.7807 Glycine max 7228 8917 XP_002284361225461286 0.7719 Vitis vinifera 7229 8918 ADU05416 315364829 0.7851Citrullus lanatus 7230 8919 XP_002265183 225465748 0.75 Vitis vinifera7231 8920 XP_002513246 255761086 0.807 Ricinus communis 7232 544-564ACU20677 255640786 1 Glycine max 7233 8921 P26291 0.7099 Pisum sativum7234 XP_003597086 357453610 0.7023 Medicago truncatula 7235 8922 304-324XP_003541823 356546825 1 Glycine max 7236 8923 288-308 XP_003518627356499601 1 Glycine max 7237 8924 XP_003542153 356547506 0.9478 Glycinemax 7238 8925 ADN33938 307136081 0.7937 Cucumis melo 7239 8926 subsp.melo XP_002518919 255761086 0.7755 Ricinus communis 7240 XP_002279642225426567 0.7755 Vitis vinifera 7241 8927 XP_002870592 297853636 0.7664Arabidopsis lyrata 7242 subsp. lyrata NP_199024 30693991 0.7642Arabidopsis thaliana 7243 8928 AAM63843 21405504 0.7596 Arabidopsisthaliana 7244 8929 XP_002299422 255761085 0.7528 Populus trichocarpa7245 XP_002303695 255761085 0.7574 Populus trichocarpa 7246 123-143XP_003543825 356550908 1 Glycine max 7247 8930 460-480 XP_003542153356547506 1 Glycine max 7248 8931 XP_003518627 356499601 0.9436 Glycinemax 7249 8932 838-858 XP_003526354 356515330 1 Glycine max 7250 8933XP_003523913 356510372 0.9333 Glycine max 7251 8934 72-92 XP_003535315356533526 1 Glycine max 7252 8935 XP_003555178 356574075 0.9462 Glycinemax 7253 8936 XP_003591226 357441896 0.7849 Medicago truncatula 72548937 XP_002512536 255761086 0.7465 Ricinus communis 7255 CBI39621270257428 0.7465 Vitis vinifera 7256 8938 CAP59645 163913883 0.7558Vitis vinifera 7257 8939 XP_002277312 225450534 0.7496 Vitis vinifera7258 8940 XP_002280462 225432056 0.7404 Vitis vinifera 7259 8941CAP59646 163913885 0.7512 Vitis vinifera 7260 8942 CAN63178 1237112730.7373 Vitis vinifera 7261 8943 157-177 XP_003594856 357449158 1Medicago truncatula 7262 8944 XP_003533661 356530178 0.913 Glycine max7263 8945 ACU18911 255637160 0.9091 Glycine max 7264 8946 ACU19698255638787 0.9051 Glycine max 7265 8947 XP_002273965 225423594 0.83 Vitisvinifera 7266 8948 NP_001058303 115469407 0.7984 Oryza sativa 7267 8949Japonica Group XP_002528147 255761086 0.8063 Ricinus communis 7268AEL99129 343172851 0.8142 Silene latifolia 7269 8950 AEL99130 3431728530.8103 Silene latifolia 7270 8951 XP_002438809 255761094 0.7787 Sorghumbicolor 7271 613-633 XP_003541563 356546291 1 Glycine max 7272 8952XP_003545791 356554924 0.805 Glycine max 7273 8953 904-924 XP_003556814356577399 1 Glycine max 7274 8954 2015-2035 XP_003538988 356541033 1Glycine max 7275 8955 XP_003607189 357473808 0.7407 Medicago truncatula7276 8956 XP_003604038 357467506 0.7035 Medicago truncatula 7277 8957841-861 XP_003523913 356510372 1 Glycine max 7278 8958 XP_003526354356515330 0.9333 Glycine max 7279 8959 925-945 XP_003545791 356554924 1Glycine max 7280 8960 XP_003541563 356546291 0.8662 Glycine max 72818961 ptc- 371-391 XP_003518621 356499589 1 Glycine max 7282 8962miRf10734- XP_003529232 356521172 0.9575 Glycine max 7283 8963 akrABI48270 113911567 0.8826 Lotus japonicus 7284 8964 XP_003525213356513021 0.8512 Glycine max 7285 8965 XP_003530935 356524637 0.8502Glycine max 7286 8966 XP_003631014 357521450 0.836 Medicago truncatula7287 8967 XP_002285117 225424439 0.8117 Vitis vinifera 7288 8968ACE63259 190148352 0.8067 Betula pendula 7289 8969 ABI48271 1139115690.8259 Lotus japonicus 7290 8970 XP_002314765 255761085 0.7783 Populustrichocarpa 7291 1151-1171 XP_003520774 356503973 1 Glycine max 72928971 1761-1781 XP_003523576 356509683 1 Glycine max 7293 XP_003527692356518039 0.8899 Glycine max 7294 1929-1949 XP_003527692 356518039 1Glycine max 7295 XP_003523576 356509683 0.8906 Glycine max 72961230-1250 XP_003538849 356540752 1 Glycine max 7297 8972 XP_003520774356503973 0.7213 Glycine max 7298 8973 ptc- 161-180 XP_003549130356561725 1 Glycine max 7299 8974 miRf10985- XP_003553944 3565715580.9452 Glycine max 7300 8975 akr 1659-1678 AAF67341 7682676 1 Vignaradiata 7301 8976 ACF22882 193850556 0.9362 Glycine max 7302XP_003546457 356556285 0.9334 Glycine max 7303 8977 XP_003550633356564793 0.8239 Glycine max 7304 8978 CAA09457 3641864 0.8017 Cicerarietinum 7305 8979 CAA06309 14274980 0.7961 Cicer arietinum 7306 8980CAA09467 3860419 0.8058 Lupinus angustifolius 7307 8981 XP_002514108255761086 0.7878 Ricinus communis 7308 XP_003595162 357449770 0.7906Medicago truncatula 7309 8982 XP_002308268 255761085 0.7684 Populustrichocarpa 7310 235-254 BAF31130 114213453 1 Vicia faba 7311 8983P48488 0.9751 Medicago sativa 7312 subsp. × varia ACJ84258 2170717950.972 Medicago truncatula 7313 8984 XP_003532976 356528780 0.9346Glycine max 7314 8985 XP_003525372 356513340 0.9283 Glycine max 73158986 ACU20069 255639548 0.9252 Glycine max 7316 8987 XP_002509868255761086 0.9034 Ricinus communis 7317 XP_002298008 255761085 0.8972Populus trichocarpa 7318 XP_002277816 225426133 0.9034 Vitis vinifera7319 8988 NP_176587 145337150 0.8442 Arabidopsis thaliana 7320 8989235-254 XP_003551188 356565928 1 Glycine max 7321 8990 XP_003538544356540131 0.9106 Glycine max 7322 8991 ACU18328 255635963 0.9083 Glycinemax 7323 8992 XP_003601767 357462970 0.7064 Medicago truncatula 73248993 495-514 XP_003553428 356570509 1 Glycine max 7325 8994 XP_003520534356503475 0.9081 Glycine max 7326 8995 51-70 XP_003545057 356553424 1Glycine max 7327 8996 XP_003519693 356501762 0.9036 Glycine max 73288997 XP_002312804 255761085 0.7267 Populus trichocarpa 7329 XP_002279611225428277 0.7199 Vitis vinifera 7330 8998 167-186 XP_003538544 3565401311 Glycine max 7331 8999 XP_003551188 356565928 0.9097 Glycine max 73329000 109-128 XP_003522278 356507037 1 Glycine max 7333 9001 XP_003525436356513468 0.7319 Glycine max 7334 9002 XP_003550708 356564947 0.7072Glycine max 7335 9003 393-412 XP_003520128 356502644 1 Glycine max 73369004 XP_003517860 356498034 0.9129 Glycine max 7337 9005 217-236AES84797 339649045 1 Medicago truncatula 7338 9006 XP_003518611356499568 0.8041 Glycine max 7339 9007 XP_003529219 356521146 0.7947Glycine max 7340 9008 XP_003525231 356513057 0.7665 Glycine max 73419009 XP_003630941 357521304 0.7834 Medicago truncatula 7342 9010XP_003530877 356524520 0.7552 Glycine max 7343 9011 XP_002525995255761086 0.7269 Ricinus communis 7344 XP_002315857 255761085 0.7213Populus trichocarpa 7345 ABK94575 118485436 0.7213 Populus trichocarpa7346 9012 XP_002311530 255761085 0.7175 Populus trichocarpa 7347 398-417XP_003588450 357436348 1 Medicago truncatula 7348 9013 XP_003526513356515652 0.8496 Glycine max 7349 9014 XP_003522729 356507956 0.8453Glycine max 7350 9015 XP_003603665 357466760 0.839 Medicago truncatula7351 9016 ACU21356 255642182 0.8432 Glycine max 7352 9017 XP_003550117356563738 0.8305 Glycine max 7353 9018 CAD92450 31455392 0.7479 Brassicanapus 7354 9019 ADB92670 284519839 0.75 Populus tremula × 7355 9020Populus alba XP_002510013 255761086 0.7373 Ricinus communis 7356XP_002301129 255761085 0.7373 Populus trichocarpa 7357 370-389XP_003553428 356570509 1 Glycine max 7358 9021 758-777 XP_003520534356503475 1 Glycine max 7359 9022 XP_003553428 356570509 0.9081 Glycinemax 7360 9023 236-255 XP_003551188 356565928 1 Glycine max 7361 902435-54 AAM12880 20149261 1 Helianthus annuus 7362 9025 CBI28152 2702405010.991 Vitis vinifera 7363 XP_002284967 225430201 0.991 Vitis vinifera7364 9026 CBI21000 270231236 0.991 Vitis vinifera 7365 CBI36254270253379 0.9819 Vitis vinifera 7366 9027 NP_200330 145359269 0.9864Arabidopsis thaliana 7367 9028 XP_003522628 356507751 0.9819 Glycine max7368 9029 AEM97804 344189954 0.9864 Dimocarpus longan 7369 9030XP_002864382 297853636 0.9864 Arabidopsis lyrata 7370 subsp. lyrataXP_002285307 225442824 0.9819 Vitis vinifera 7371 9031 755-774XP_003518080 356498481 1 Glycine max 7372 9032 XP_003551421 3565664020.8408 Glycine max 7373 9033 56-75 XP_003522398 356507283 1 Glycine max7374 9034 XP_003526192 356515005 0.9095 Glycine max 7375 9035XP_003526191 356515003 0.9128 Glycine max 7376 9036 XP_003527777356518217 0.7966 Glycine max 7377 9037 113-132 XP_003538544 356540131 1Glycine max 7378 9038 1097-1116 XP_003520128 356502644 1 Glycine max7379 9039 1482-1501 XP_003546504 356556379 1 Glycine max 7380 9040XP_003550617 356564761 0.7923 Glycine max 7381 9041 XP_003542359356547932 0.7889 Glycine max 7382 9042 XP_002279041 225444747 0.7337Vitis vinifera 7383 9043 XP_002870435 297853636 0.7119 Arabidopsislyrata 7384 subsp. lyrata XP_002516284 255761086 0.7102 Ricinus communis7385 NP_568528 22327353 0.7018 Arabidopsis thaliana 7386 9044XP_002326282 255761085 0.7002 Populus trichocarpa 7387 ptc- 264-283XP_003518840 356500034 1 Glycine max 7388 9045 miRf11315- XP_003529395356521503 0.9171 Glycine max 7389 9046 akr XP_003607985 357475398 0.8275Medicago truncatula 7390 9047 XP_002518769 255761086 0.7579 Ricinuscommunis 7391 XP_002313117 255761085 0.7496 Populus trichocarpa 7392AAQ90244 37223341 0.7446 Solanum lycopersicum 7393 9048 NP_001234399350534489 0.7446 Solanum lycopersicum 7394 9049 NP_188555 306852460.7247 Arabidopsis thaliana 7395 9050 XP_002883169 297853636 0.7164Arabidopsis lyrata 7396 subsp. lyrata CBI32416 270245997 0.7313 Vitisvinifera 7397 9051 324-343 XP_003550774 356565082 1 Glycine max 73989052 XP_003525472 356513541 0.8489 Glycine max 7399 9053 324-343XP_003550774 356565082 1 Glycine max 7400 9054 680-699 XP_003554964356573636 1 Glycine max 7401 9055 ptc- 404-426 XP_003612685 357484794 1Medicago truncatula 7402 9056 miRf11757- XP_003516858 356495999 0.8914Glycine max 7403 9057 akr XP_003534304 356531476 0.8801 Glycine max 74049058 BAH03477 218744535 0.8015 Nicotiana tabacum 7405 9059 XP_002519001255761086 0.824 Ricinus communis 7406 XP_002303454 255761085 0.8127Populus trichocarpa 7407 ABK93338 118482845 0.8052 Populus trichocarpa7408 9060 XP_002326571 255761085 0.8015 Populus trichocarpa 7409XP_002274060 225427054 0.764 Vitis vinifera 7410 9061 XP_002890966297853636 0.7603 Arabidopsis lyrata 7411 subsp. lyrata ath- 164-184XP_003549130 356561725 1 Glycine max 7412 9062 miR157a XP_003553944356571558 0.9452 Glycine max 7413 9063 238-258 XP_003551188 356565928 1Glycine max 7414 9064 XP_003538544 356540131 0.9106 Glycine max 74159065 ACU18328 255635963 0.9083 Glycine max 7416 9066 XP_003601767357462970 0.7064 Medicago truncatula 7417 9067 1129-1149 XP_003525415356513426 1 Glycine max 7418 9068 XP_003532399 356527605 0.9051 Glycinemax 7419 9069 898-918 XP_003540473 356544059 1 Glycine max 7420 9070XP_003543233 356549706 0.9305 Glycine max 7421 9071 ACU24116 2556472980.9251 Glycine max 7422 9072 118-138 XP_003525436 356513468 1 Glycinemax 7423 9073 XP_003550708 356564947 0.9204 Glycine max 7424 9074XP_003522278 356507037 0.7595 Glycine max 7425 9075 77-97 XP_003520455356503312 1 Glycine max 7426 9076 XP_003530170 356523079 0.848 Glycinemax 7427 9077 498-518 XP_003553428 356570509 1 Glycine max 7428 9078XP_003520534 356503475 0.9081 Glycine max 7429 9079 50-70 XP_003550708356564947 1 Glycine max 7430 9080 XP_003525436 356513468 0.9373 Glycinemax 7431 9081 854-875 XP_003555667 356575073 1 Glycine max 7432 9082170-190 XP_003538544 356540131 1 Glycine max 7433 9083 XP_003551188356565928 0.9097 Glycine max 7434 9084 593-613 NP_001236309 351724988 1Glycine max 7435 9085 XP_003529339 356521389 0.838 Glycine max 7436 9086144-164 XP_002275728 225446415 1 Vitis vinifera 7437 9087 AAY1644062856978 0.7396 Betula platyphylla 7438 9088 112-132 XP_003522278356507037 1 Glycine max 7439 9089 396-416 XP_003520128 356502644 1Glycine max 7440 9090 XP_003517860 356498034 0.9129 Glycine max 74419091 181-201 XP_003523155 356508826 1 Glycine max 7442 9092 593-613NP_001236309 351724988 1 Glycine max 7443 9093 116-136 ACU18105255635506 1 Glycine max 7444 9094 758-778 XP_003518080 356498481 1Glycine max 7445 9095 XP_003551421 356566402 0.8408 Glycine max 74469096 120-140 XP_003549130 356561725 1 Glycine max 7447 693-713XP_003525415 356513426 1 Glycine max 7448 9097 737-757 XP_003553428356570509 1 Glycine max 7449 9098 116-136 XP_003538544 356540131 1Glycine max 7450 9099 818-838 XP_003553944 356571558 1 Glycine max 74519100 238-258 XP_003551188 356565928 1 Glycine max 7452 9101 1070-1090XP_003525436 356513468 1 Glycine max 7453 9102 109-129 XP_003520455356503312 1 Glycine max 7454 9103 404-424 XP_003526029 356514674 1Glycine max 7455 9104 XP_003540122 356543345 0.8919 Glycine max 74569105 181-201 XP_003523155 356508826 1 Glycine max 7457 9106 713-733XP_003551421 356566402 1 Glycine max 7458 9107 XP_003518080 3564984810.7962 Glycine max 7459 9108 sbi- 305-325 XP_003541823 356546825 1Glycine max 7460 9109 miR159a 305-325 XP_003541823 356546825 1 Glycinemax 7461 9110 289-309 XP_003518627 356499601 1 Glycine max 7462 9111XP_003542153 356547506 0.9478 Glycine max 7463 9112 ADN33938 3071360810.7937 Cucumis melo 7464 9113 subsp. melo XP_002518919 255761086 0.7755Ricinus communis 7465 XP_002279642 225426567 0.7755 Vitis vinifera 74669114 XP_002870592 297853636 0.7664 Arabidopsis lyrata 7467 subsp. lyrataNP_199024 30693991 0.7642 Arabidopsis thaliana 7468 9115 AAM6384321405504 0.7596 Arabidopsis thaliana 7469 9116 XP_002299422 2557610850.7528 Populus trichocarpa 7470 XP_002303695 255761085 0.7574 Populustrichocarpa 7471 124-144 XP_003543825 356550908 1 Glycine max 7472 9117XP_003556814 356577399 0.813 Glycine max 7473 9118 461-481 XP_003542153356547506 1 Glycine max 7474 9119 XP_003518627 356499601 0.9436 Glycinemax 7475 9120 839-859 XP_003526354 356515330 1 Glycine max 7476 9121XP_003523913 356510372 0.9333 Glycine max 7477 9122 73-93 XP_003535315356533526 1 Glycine max 7478 9123 XP_003555178 356574075 0.9462 Glycinemax 7479 9124 XP_003591226 357441896 0.7849 Medicago truncatula 74809125 XP_002512536 255761086 0.7465 Ricinus communis 7481 CBI39621270257428 0.7465 Vitis vinifera 7482 9126 CAP59645 163913883 0.7558Vitis vinifera 7483 9127 XP_002277312 225450534 0.7496 Vitis vinifera7484 9128 XP_002280462 225432056 0.7404 Vitis vinifera 7485 9129CAP59646 163913885 0.7512 Vitis vinifera 7486 9130 CAN63178 1237112730.7373 Vitis vinifera 7487 9131 614-634 XP_003541563 356546291 1 Glycinemax 7488 9132 XP_003545791 356554924 0.805 Glycine max 7489 9133 905-925XP_003556814 356577399 1 Glycine max 7490 9134 XP_003543825 3565509080.8659 Glycine max 7491 9135 smo- 164-184 XP_003549130 356561725 1Glycine max 7492 9136 miR156b XP_003553944 356571558 0.9452 Glycine max7493 9137 238-258 XP_003551188 356565928 1 Glycine max 7494 9138XP_003538544 356540131 0.9106 Glycine max 7495 9139 ACU18328 2556359630.9083 Glycine max 7496 9140 XP_003601767 357462970 0.7064 Medicagotruncatula 7497 9141 1129-1149 XP_003525415 356513426 1 Glycine max 74989142 XP_003532399 356527605 0.9051 Glycine max 7499 9143 118-138XP_003525436 356513468 1 Glycine max 7500 9144 XP_003550708 3565649470.9204 Glycine max 7501 9145 XP_003522278 356507037 0.7595 Glycine max7502 9146 77-97 XP_003520455 356503312 1 Glycine max 7503 9147XP_003530170 356523079 0.848 Glycine max 7504 9148 50-70 XP_003550708356564947 1 Glycine max 7505 9149 XP_003525436 356513468 0.9373 Glycinemax 7506 9150 498-518 XP_003553428 356570509 1 Glycine max 7507 9151XP_003520534 356503475 0.9081 Glycine max 7508 9152 170-190 XP_003538544356540131 1 Glycine max 7509 9153 XP_003551188 356565928 0.9097 Glycinemax 7510 9154 593-613 NP_001236309 351724988 1 Glycine max 7511 9155XP_003529339 356521389 0.838 Glycine max 7512 9156 475-495 XP_003528960356520620 1 Glycine max 7513 9157 NP_001235425 351721650 0.9279 Glycinemax 7514 9158 144-164 XP_002275728 225446415 1 Vitis vinifera 7515 9159AAY16440 62856978 0.7396 Betula platyphylla 7516 9160 112-132XP_003522278 356507037 1 Glycine max 7517 9161 396-416 XP_003520128356502644 1 Glycine max 7518 9162 XP_003517860 356498034 0.9129 Glycinemax 7519 9163 243-263 XP_003540122 356543345 1 Glycine max 7520 9164XP_003526029 356514674 0.8684 Glycine max 7521 9165 181-201 XP_003523155356508826 1 Glycine max 7522 9166 77-97 XP_003520455 356503312 1 Glycinemax 7523 9167 373-393 XP_003553428 356570509 1 Glycine max 7524 9168761-781 XP_003520534 356503475 1 Glycine max 7525 9169 XP_003553428356570509 0.9081 Glycine max 7526 9170 110-130 XP_003553944 356571558 1Glycine max 7527 9171 239-259 XP_003551188 356565928 1 Glycine max 75289172 1022-1042 XP_003532399 356527605 1 Glycine max 7529 9173XP_003525415 356513426 0.8914 Glycine max 7530 9174 593-613 NP_001236309351724988 1 Glycine max 7531 9175 116-136 ACU18105 255635506 1 Glycinemax 7532 9176 758-778 XP_003518080 356498481 1 Glycine max 7533 9177XP_003551421 356566402 0.8408 Glycine max 7534 9178 1231-1251XP_003525415 356513426 1 Glycine max 7535 9179 20-40 XP_003549130356561725 1 Glycine max 7536 9180 1070-1090 XP_003525436 356513468 1Glycine max 7537 9181 404-424 XP_003526029 356514674 1 Glycine max 75389182 XP_003540122 356543345 0.8919 Glycine max 7539 9183 185-205XP_003538544 356540131 1 Glycine max 7540 9184 713-733 XP_003551421356566402 1 Glycine max 7541 9185 XP_003518080 356498481 0.7962 Glycinemax 7542 9186 osa- 32-52 AAM97011 22531013 1 Arabidopsis thaliana 75439187 miRf10839- NP_563815 145335272 0.9929 Arabidopsis thaliana 75449188 akr XP_002892455 297853636 0.9786 Arabidopsis lyrata 7545 subsp.lyrata BAJ33638 312281544 0.9429 Thellungiella halophila 7546 9189XP_002523852 255761086 0.7714 Ricinus communis 7547 AEL99169 3431729310.75 Silene latifolia 7548 9190 XP_002313603 255761085 0.7429 Populustrichocarpa 7549 ACJ86143 217075565 0.7214 Medicago truncatula 7550 9191ADI45844 297525844 0.7429 Silene vulgaris 7551 9192 XP_002328107255761085 0.75 Populus trichocarpa 7552 ptc- 35-54 ACJ37435 212717187 1Glycine max 7553 9193 miRf10300- ACU23160 255645326 0.9948 Glycine max7554 9194 akr ACJ37436 212717189 0.933 Glycine max 7555 9195 537-556NP_001235206 351722714 1 Glycine max 7556 9196 NP_001236569 3517251100.9581 Glycine max 7557 9197 XP_002866588 297853636 0.7126 Arabidopsislyrata 7558 subsp. lyrata XP_002309915 255761085 0.7665 Populustrichocarpa 7559 NP_201209 145359627 0.7066 Arabidopsis thaliana 75609198 ABK96256 118488893 0.7605 Populus trichocarpa × 7561 9199 Populusdeltoides XP_002526638 255761086 0.7485 Ricinus communis 7562XP_002306249 255761085 0.7784 Populus trichocarpa 7563 2WSC_N 0.7844Phaseolus vulgaris 7564 BAJ33864 312281996 0.7066 Thellungiellahalophila 7565 9200 39-58 XP_002283864 225429937 1 Vitis vinifera 75669201 ptc- 318-339 BAG09382 167961874 1 Glycine max 7567 9202 miRf10619-NP_001238412 351726609 0.9838 Glycine max 7568 9203 akr ACU19205255637765 0.9704 Glycine max 7569 9204 CAN67413 123711204 0.9272 Vitisvinifera 7570 9205 ACD93720 223987377 0.903 Mikania micrantha 7571 9206XP_002862992 297853636 0.9191 Arabidopsis lyrata 7572 subsp. lyrataXP_002277249 225462095 0.9299 Vitis vinifera 7573 9207 XP_002317470255761085 0.9218 Populus trichocarpa 7574 1803516A 0.9191 Lens culinaris7575 XP_002519658 255761086 0.9084 Ricinus communis 7576 32-53 ACU18791255636916 1 Glycine max 7577 9208 1512-1532 ACQ44234 228485370 1 Glycinemax 7578 9209 55-75 XP_002512977 255761086 1 Ricinus communis 7579 ptc-418-438 ACU17540 255634349 1 Glycine max 7580 9210 miRf11847- akr ath-293-314 ACU18306 255635917 1 Glycine max 7581 9211 miRf10701- 918-939NP_001237102 351725712 1 Glycine max 7582 9212 akr XP_002284425225445231 0.7562 Vitis vinifera 7583 9213 348-369 NP_001236604 3517261251 Glycine max 7584 9214 1178-1199 ACU21144 255641746 1 Glycine max 75859215 XP_002277008 225444658 0.7859 Vitis vinifera 7586 9216 XP_002276983225444660 0.7859 Vitis vinifera 7587 9217 CAB75429 6996559 0.7204Nicotiana plumbaginifolia 7588 9218 XP_002331184 255761085 0.733 Populustrichocarpa 7589 XP_002529199 255761086 0.7355 Ricinus communis 7590XP_002516242 255761086 0.7179 Ricinus communis 7591 XP_002270823225442060 0.7254 Vitis vinifera 7592 9219 CBI35841 270253379 0.7179Vitis vinifera 7593 CAN65009 147797980 0.7229 Vitis vinifera 7594 9220osa- 321-339 ABB02162 77744234 1 Medicago sativa 7595 9221 miRf11595-ABB02161 77744232 0.975 Medicago sativa 7596 9222 akr ACJ85732 2170747430.9711 Medicago truncatula 7597 9223 AEO21428 346229108 0.8227 Glycinemax 7598 9224 ABC59101 84514184 0.8073 Medicago truncatula 7599 9225ABC68398 85001688 0.7842 Glycine max 7600 9226 ABS53040 153869430 0.8073Leucaena leucocephala 7601 9227 AAT39511 47933889 0.7553 Camptothecaacuminata 7602 9228 XP_002327769 255761085 0.7572 Populus trichocarpa7603 XP_002327770 255761085 0.7437 Populus trichocarpa 7604 107-125NP_001236740 351722666 1 Glycine max 7605 9229 56-74 CAE02645 34495198 1Lotus japonicus 7606 9230 CAA65585 2347053 0.7513 Vitis vinifera 76079231 AAP36992 46371994 0.753 Cucumis sativus 7608 9232 BAE71301 844684350.7598 Trifolium pratense 7609 9233 XP_002269030 225427781 0.7445 Vitisvinifera 7610 9234 BAE71251 84468335 0.7581 Trifolium pratense 7611 9235BAG68575 195976672 0.7496 Prunus persica 7612 9236 BAD06581 406454710.7394 Nicotiana tabacum 7613 9237 CAN65288 147782233 0.7291 Vitisvinifera 7614 9238 CAB64599 6646839 0.7359 Datura stramonium 7615 9239311-329 ACU18654 255636632 1 Glycine max 7616 9240 515-533 NP_001235161351721419 1 Glycine max 7617 9241 BAB86923 19911192 0.711 Vignaangularis 7618 9242 22-40 NP_001237655 351726929 1 Glycine max 7619 9243421-439 ACU22898 255644792 1 Glycine max 7620 9244 osa- 407-428NP_001237033 351723724 1 Glycine max 7621 9245 miRf11013- 32-53 ABY84658166203235 1 Glycine max 7622 9246 akr NP_001236902 351727360 0.9715Glycine max 7623 9247 AAL32033 18158618 0.7967 Retama raetam 7624 9248597-618 ACU23333 255645678 1 Glycine max 7625 9249 29-50 NP_001236902351727360 1 Glycine max 7626 9250 ABY84658 166203235 0.9696 Glycine max7627 9251 ptc- 679-698 NP_001238384 351725780 1 Glycine max 7628 9252miRf10148- 547-566 XP_002283799 225435835 1 Vitis vinifera 7629 9253 akrCAN72395 147774368 0.9606 Vitis vinifera 7630 ACU20767 255640974 0.9462Glycine max 7631 9254 XP_002304844 255761085 1.0896 Populus trichocarpa7632 CBI16575 270227042 0.9176 Vitis vinifera 7633 XP_002523383255761086 0.8746 Ricinus communis 7634 XP_002299088 255761085 0.8853Populus trichocarpa 7635 NP_850182 42570348 0.81 Arabidopsis thaliana7636 9255 NP_565736 42569548 0.8065 Arabidopsis thaliana 7637 9256XP_002862885 297853636 0.8029 Arabidopsis lyrata 7638 subsp. lyrata135-154 ACU17996 255635284 1 Glycine max 7639 9257 ACU23482 2556459880.8725 Glycine max 7640 9258 XP_002307595 255761085 0.8406 Populustrichocarpa 7641 XP_002524761 255761086 0.8319 Ricinus communis 7642XP_002300832 255761085 0.8261 Populus trichocarpa 7643 XP_002279156225437057 0.8029 Vitis vinifera 7644 9259 XP_002878504 297853636 0.7072Arabidopsis lyrata 7645 subsp. lyrata 141-160 XP_002283799 225435835 1Vitis vinifera 7646 9260 367-386 ACU17970 255635230 1 Glycine max 76479261 ACU18145 255635589 0.9494 Glycine max 7648 9262 XP_002510492255761086 0.7946 Ricinus communis 7649 XP_002278539 225458064 0.7798Vitis vinifera 7650 9263 XP_002306908 255761085 0.7619 Populustrichocarpa 7651 ABL10371 118723367 0.75 Medicago truncatula 7652 9264XP_002301996 255761085 0.7738 Populus trichocarpa 7653 NP_568605145358761 0.7024 Arabidopsis thaliana 7654 9265 110-129 ACU17996255635284 1 Glycine max 7655 9266 zma- 122-140 ACU21375 255642220 1Glycine max 7656 9267 miR482-5p 128-146 XP_002314999 255761085 1 Populustrichocarpa 7657 XP_002312287 255761085 0.9432 Populus trichocarpa 7658XP_002285502 225424638 0.8428 Vitis vinifera 7659 9268 XP_002520520255761086 0.8341 Ricinus communis 7660 XP_002876891 297853636 0.8035Arabidopsis lyrata 7661 subsp. lyrata NP_178465 30678070 0.7948Arabidopsis thaliana 7662 9269 NP_001149451 226506925 0.7773 Zea mays7663 9270 XP_002875224 297853636 0.7904 Arabidopsis lyrata 7664 subsp.lyrata NP_001054237 115461273 0.7686 Oryza sativa 7665 9271 JaponicaGroup CAH68184 90399185 0.7642 Oryza sativa 7666 9272 Indica Group745-763 NP_001235027 351724922 1 Glycine max 7667 9273 NP_001238461351728042 0.9389 Glycine max 7668 9274 NP_001235888 351727642 0.9389Glycine max 7669 9275 NP_001235511 351724120 0.9313 Glycine max 76709276 ADD11814 289586041 0.8244 Cajanus cajan 7671 9277 AAC49369 14208840.7939 Phaseolus vulgaris 7672 9278 40-58 ACU20629 255640688 1 Glycinemax 7673 9279 27-45 ACU20555 255640539 1 Glycine max 7674 9280 19-37ACU23548 255646123 1 Glycine max 7675 9281 Q96452 0.9922 Glycine max7676 NP_001235679 351721598 1 Glycine max 7677 9282 ACU19187 2556377280.9457 Glycine max 7678 9283 ACU17765 255634808 0.8876 Glycine max 76799284 XP_002523376 255761086 0.8411 Ricinus communis 7680 ACQ45020228552591 0.845 Cicer arietinum 7681 9285 XP_002285427 225461653 0.8256Vitis vinifera 7682 9286 P42654 0.8372 Vicia faba 7683 XP_002316863255761085 0.8333 Populus trichocarpa 7684 59-77 ACU24228 255647528 1Glycine max 7685 9287 ACU18882 255637100 0.7652 Glycine max 7686 9288XP_002276186 225429425 0.7652 Vitis vinifera 7687 9289 XP_002516481255761086 0.7391 Ricinus communis 7688 XP_002324746 255761085 0.7304Populus trichocarpa 7689 NP_565612 145360329 0.7217 Arabidopsis thaliana7690 9290 XP_002880724 297853636 0.7275 Arabidopsis lyrata 7691 subsp.lyrata XP_002281479 225442372 0.7362 Vitis vinifera 7692 9291 ABB8625382621129 0.7014 Solanum tuberosum 7693 9292 CBI35995 270253379 0.7362Vitis vinifera 7694 296-314 NP_001237978 351721473 1 Glycine max 76959293 59-77 ACU18882 255637100 1 Glycine max 7696 9294 ACU24228 2556475280.9209 Glycine max 7697 9295 NP_001031418 79323070 0.723 Arabidopsisthaliana 7698 9296 204-222 ACU20859 255641163 1 Glycine max 7699 9297 91-109 ACU15870 255631011 1 Glycine max 7700 9298 390-408 CAI4325157283984 1 Phaseolus vulgaris 7701 9299 var. nanus ABA86966 775402150.937 Glycine max 7702 9300 NP_001237472 351721637 0.937 Glycine max7703 9301 ACU23435 255645890 0.9213 Glycine max 7704 9302 XP_002283671225434934 0.8228 Vitis vinifera 7705 9303 ACJ11723 211906459 0.8386Gossypium hirsutum 7706 9304 ABA46792 76573374 0.8228 Solanum tuberosum7707 9305 XP_002299871 255761085 0.815 Populus trichocarpa 7708 CAN67342147772559 0.815 Vitis vinifera 7709 XP_002876302 297853636 0.811Arabidopsis lyrata 7710 subsp. lyrata 61-79 ACU17423 255634119 1 Glycinemax 7711 9306 140-158 ABA86966 77540215 1 Glycine max 7712 9307 CAI4325157283984 0.9407 Phaseolus vulgaris 7713 9308 var. nanus XP_002283693225449540 0.8261 Vitis vinifera 7714 9309 309-327 AAV87173 56404220 1Phaseolus vulgaris 7715 9310 BAD97829 63002633 0.7487 Prunus persica7716 9311 ptc- 79-98 ACU20325 255640067 1 Glycine max 7717 9312miRf10522- 321-340 ADM32504 304421409 1 Glycine max 7718 9313 akrCAD12837 18075959 0.8679 Lupinus luteus 7719 9314 CBI27290 2702395160.7896 Vitis vinifera 7720 XP_002316086 255761085 0.7847 Populustrichocarpa 7721 XP_002512077 255761086 0.7765 Ricinus communis 7722CAD12836 18075957 0.7471 Lupinus luteus 7723 9315 XP_002311341 2557610850.7553 Populus trichocarpa 7724 NP_172830 145335664 0.7259 Arabidopsisthaliana 7725 9316 XP_002892769 297853636 0.7243 Arabidopsis lyrata 7726subsp. lyrata 1811-1830 NP_001237605 351725462 1 Glycine max 7727 9317NP_001235120 351727636 0.7738 Glycine max 7728 9318 osa- 663-683ACU20209 255639831 1 Glycine max 7729 9319 miRf10362- 309-329XP_002531192 255761086 1 Ricinus communis 7730 akr XP_002298817255761085 0.7018 Populus trichocarpa 7731 415-435 NP_001238595 3517244921 Glycine max 7732 9320 ath- 261-280 ACU23703 255646448 1 Glycine max7733 9321 miRf10702- 328-347 ABD28727 49405947 1 Medicago truncatula7734 akr NP_001236252 351723348 0.9592 Glycine max 7735 9322NP_001236882 351726775 0.9456 Glycine max 7736 9323 CAG14986 457201890.9184 Cicer arietinum 7737 9324 XP_002268544 225442984 0.8844 Vitisvinifera 7738 9325 XP_002517623 255761086 0.8912 Ricinus communis 7739XP_002298252 255761085 0.8707 Populus trichocarpa 7740 NP_172989145335736 0.8639 Arabidopsis thaliana 7741 9326 EEC76567 54362548 0.8571Oryza sativa 7742 Indica Group BAJ92153 326514005 0.8435 Hordeum vulgare7743 9327 subsp. vulgare 690-709 ACU24052 255647167 1 Glycine max 77449328 NP_001237955 351720763 0.8561 Glycine max 7745 9329 ath- 343-362NP_001234975 351723428 1 Glycine max 7746 9330 miRf10148- XP_002314377255761085 0.8174 Populus trichocarpa 7747 akr XP_002270067 2254317540.8119 Vitis vinifera 7748 9331 CBI22983 270234210 0.8119 Vitis vinifera7749 XP_002328602 255761085 0.7953 Populus trichocarpa 7750 BAG16526171854672 0.7898 Capsicum chinense 7751 9332 Q39659 0.7621 Cucumissativus 7752 NP_187342 145338207 0.7759 Arabidopsis thaliana 7753 9333XP_002882497 297853636 0.7718 Arabidopsis lyrata 7754 subsp. lyrataO49809 0.7552 Brassica napus 7755 176-195 NP_001235442 351722139 1Glycine max 7756 9334 NP_001236219 351722401 0.9712 Glycine max 77579335 ABC46708 83776785 0.8417 Arachis hypogaea 7758 9336 Q40519 0.8201Nicotiana tabacum 7759 NP_001234042 350537546 0.8273 Solanumlycopersicum 7760 9337 P06183 0.8201 Solanum tuberosum 7761 ADB93062284520973 0.8273 Jatropha curcas 7762 9338 CAA27989 21490 0.8058 Solanumtuberosum 7763 9339 XP_002332206 255761085 0.7914 Populus trichocarpa7764 ABK96223 118488825 0.7914 Populus trichocarpa × 7765 9340 Populusdeltoides 80-99 ACJ85304 217073887 1 Medicago truncatula 7766 9341ABF66654 120650107 0.9086 Ammopiptanthus mongolicus 7767 9342 ACU19677255638744 0.9213 Glycine max 7768 9343 CBI18248 270229319 0.8807 Vitisvinifera 7769 XP_002530504 255761086 0.8858 Ricinus communis 7770XP_002308228 255761085 0.8756 Populus trichocarpa 7771 XP_002262986225439379 0.8807 Vitis vinifera 7772 9344 ACU23134 255645273 0.8858Glycine max 7773 9345 ABJ97690 116292767 0.8503 Solanum tuberosum 77749346 XP_002322994 255761085 0.7995 Populus trichocarpa 7775 488-507ACU23010 255645020 1 Glycine max 7776 9347  989-1008 XP_002314377255761085 1 Populus trichocarpa 7777 NP_001234975 351723428 0.814Glycine max 7778 9348  82-101 ABF66654 120650107 1 Ammopiptanthusmongolicus 7779 9349 ACJ85304 217073887 0.9266 Medicago truncatula 77809350  91-110 ACU22749 255644490 1 Glycine max 7781 9351 ath- 256-277NP_001238139 351726107 1 Glycine max 7782 9352 miRf10451- NP_001237827351724486 0.9394 Glycine max 7783 9353 akr NP_001237200 351721157 0.8838Glycine max 7784 9354 NP_001236083 351725850 0.8333 Glycine max 77859355 143-164 NP_001238139 351726107 1 Glycine max 7786 9356 ath- 188-207ACU18963 255637265 1 Glycine max 7787 9357 miRf10751- ACU21242 2556419490.7764 Glycine max 7788 9358 akr 23-42 ACU20965 255641375 1 Glycine max7789 9359 XP_002301406 255761085 0.8099 Populus trichocarpa 7790XP_002320196 255761085 0.7851 Populus trichocarpa 7791 XP_002281449225454509 0.7879 Vitis vinifera 7792 9360 NP_566074 145361064 0.7245Arabidopsis thaliana 7793 9361 XP_002880239 297853636 0.7245 Arabidopsislyrata 7794 subsp. lyrata AAU93592 53793715 0.7135 Solanum demissum 77959362 XP_002876635 297853636 0.719 Arabidopsis lyrata 7796 subsp. lyrataNP_191729 145339747 0.7107 Arabidopsis thaliana 7797 9363 1857-1876XP_002525341 255761086 1 Ricinus communis 7798 XP_002326656 2557610850.8901 Populus trichocarpa 7799 CAN79431 147866563 0.8524 Vitis vinifera7800 NP_001235564 351725644 0.8599 Glycine max 7801 9364 ADW84019321438026 0.8419 Gossypium hirsutum 7802 9365 XP_002303363 2557610850.8584 Populus trichocarpa 7803 2FON_A 0.8238 Solanum lycopersicum 7804NP_001234198 350535510 0.8238 Solanum lycopersicum 7805 9366 AAW7869158531951 0.8223 Solanum cheesmaniae 7806 XP_002868103 297853636 0.8313Arabidopsis lyrata 7807 subsp. lyrata 738-757 CAD31838 21068663 1 Cicerarietinum 7808 9367 NP_001237954 351720733 0.9412 Glycine max 7809 9368ACU19740 255638874 0.9314 Glycine max 7810 9369 NP_001237941 3517278020.9118 Glycine max 7811 9370 XP_002518592 255761086 0.8824 Ricinuscommunis 7812 XP_002534445 255761086 0.8873 Ricinus communis 7813AAD38143 5031274 0.8676 Prunus armeniaca 7814 9371 XP_002283286225461208 0.8627 Vitis vinifera 7815 9372 ABN12320 124488471 0.848Gossypium hirsutum 7816 9373 XP_002867516 297853636 0.8578 Arabidopsislyrata 7817 subsp. lyrata 188-207 ACU18963 255637265 1 Glycine max 78189374  87-106 ACU21242 255641949 1 Glycine max 7819 9375 XP_002285386225430399 0.7263 Vitis vinifera 7820 9376 CBI21096 270231236 0.7263Vitis vinifera 7821 387-406 ABP88240 145652370 1 Glycine max 7822 9377ppt- 182-202 ACU23202 255645411 1 Glycine max 7823 9378 miR1220aBAG06274 318612463 0.8691 Vigna unguiculata 7824 9379 CBI31552 2702444440.7404 Vitis vinifera 7825 XP_002280217 225449239 0.7404 Vitis vinifera7826 9380 XP_002316242 255761085 0.7652 Populus trichocarpa 7827NP_181518 30688068 0.7111 Arabidopsis thaliana 7828 9381 XP_002879830297853636 0.7133 Arabidopsis lyrata 7829 subsp. lyrata AAM65420 214066330.7088 Arabidopsis thaliana 7830 9382 NP_191133 42565959 0.7314Arabidopsis thaliana 7831 9383 XP_002876330 297853636 0.7246 Arabidopsislyrata 7832 subsp. lyrata 539-559 NP_001234951 351722740 1 Glycine max7833 9384 182-202 ACU23202 255645411 1 Glycine max 7834 9385 233-253ACU22926 255644851 1 Glycine max 7835 9386 ACU23107 255645218 0.8212Glycine max 7836 9387 ABU93486 156739649 0.7848 Vigna angularis 78379388 ABK30788 116871383 0.745 Litchi chinensis 7838 9389 AAK5111914029148 0.7152 Carica papaya 7839 9390 XP_002523709 255761086 0.7053Ricinus communis 7840 CAA48324 311834 0.7119 Tropaeolum majus 7841 9391XP_002275862 225436483 0.7219 Vitis vinifera 7842 9392 125-145 BAG06274318612463 1 Vigna unguiculata 7843 9393 ath- 17-36 ABY78023 166014266 1Glycine max 7844 9394 miRf10068- XP_002310310 255761085 0.815 Populustrichocarpa 7845 akr XP_002269295 225467972 0.7974 Vitis vinifera 78469395 AAX47170 61611670 0.7665 Pisum sativum 7847 9396 ACY82403 2678506620.793 Petunia × hybrida 7848 9397 CAG27846 83999599 0.7665 Antirrhinummajus 7849 9398 CAL36572 113207064 0.7621 Misopates orontium 7850 9399ABD66219 122056646 0.7665 Malus × domestica 7851 9400 AAF22455 66527550.7709 Paulownia kawakamii 7852 9401 AAP40641 30983947 0.7533 Eucalyptusoccidentalis 7853 9402 816-835 AEH04452 334813894 1 Arachis hypogaea7854 9403 XP_002512790 255761086 0.9358 Ricinus communis 7855 ACU21011255641470 0.9309 Glycine max 7856 9404 NP_001238484 351721287 0.9309Glycine max 7857 9405 P12858 0.9185 Pisum sativum 7858 CAA33264 207280.916 Pisum sativum 7859 9406 ACV32597 256862073 0.9185 Medicago sativa7860 9407 BAJ34149 312282566 0.8938 Thellungiella halophila 7861 9408ACT21568 251831337 0.8963 Bruguiera gymnorhiza 7862 9409 ADX97321323650480 0.9185 Mangifera indica 7863 9410 898-917 AEH04452 334813894 1Arachis hypogaea 7864 9411 121-140 ABC68403 85001696 1 Glycine max 78659412 XP_002275806 225426452 0.7992 Vitis vinifera 7866 9413 CAN80040147844259 0.7992 Vitis vinifera 7867 9414 XP_002509820 255761086 0.803Ricinus communis 7868 XP_002304502 255761085 0.7765 Populus trichocarpa7869 AAZ39642 71726941 0.7708 Petunia × hybrida 7870 9415 XP_002320802255761085 0.7557 Populus trichocarpa 7871 XP_002275115 225454267 0.7614Vitis vinifera 7872 9416 CAN80156 147852118 0.7557 Vitis vinifera 78739417 XP_002882043 297853636 0.75 Arabidopsis lyrata 7874 subsp. lyrata621-640 NP_001238484 351721287 1 Glycine max 7875 9418 AEH04452334813894 0.9355 Arachis hypogaea 7876 9419 ABK96233 118488846 0.8958Populus trichocarpa × 7877 9420 Populus deltoides 419-438 ACU19391255638154 1 Glycine max 7878 9421 511-530 CAC80373 18072796 1 Capsicumannuum 7879 9422 CAC80372 18072794 0.9583 Capsicum annuum 7880 9423P09043 0.9263 Nicotiana tabacum 7881 osa- 56-78 ACU19975 255639357 1Glycine max 7882 9424 miRf11352- ACU19227 255637811 0.9593 Glycine max7883 9425 akr ACU19215 255637786 0.7647 Glycine max 7884 9426XP_002513621 255761086 0.7059 Ricinus communis 7885 XP_002318354255761085 0.724 Populus trichocarpa 7886 ath- 134-154 NP_001236767351723442 1 Glycine max 7887 9427 miRf11021- 18-38 ACJ84983 217073247 1Medicago truncatula 7888 9428 akr O48905 0.991 Medicago sativa 7889CAC10208 10334492 0.9639 Cicer arietinum 7890 9429 NP_001236661351727792 0.9518 Glycine max 7891 9430 XP_002332745 255761085 0.9428Populus trichocarpa 7892 XP_002533463 255761086 0.9398 Ricinus communis7893 AEB60994 328908588 0.9488 Lupinus angustifolius 7894 9431XP_002312583 255761085 0.9367 Populus trichocarpa 7895 CAH58641 528511850.9247 Plantago major 7896 9432 ABC01890 83283964 0.9337 Solanumtuberosum 7897 9433 aly- 234-256 XP_002513787 255761086 1 Ricinuscommunis 7898 miR831-5p XP_002337051 255761085 0.7 Populus trichocarpa7899 XP_002300997 255761085 0.7174 Populus trichocarpa 7900 far- 222-245ACF22880 193850552 1 Glycine max 7901 9434 miR1134 XP_002325840255761085 0.7248 Populus trichocarpa 7902 XP_002281809 225441606 0.7202Vitis vinifera 7903 9435 ABK95741 118487835 0.7294 Populus trichocarpa7904 9436 XP_002319160 255761085 0.7248 Populus trichocarpa 7905XP_002525421 255761086 0.7018 Ricinus communis 7906 48-71 CAD3183821068663 1 Cicer arietinum 7907 9437 NP_001237954 351720733 0.9412Glycine max 7908 9438 ACU19740 255638874 0.9314 Glycine max 7909 9439NP_001237941 351727802 0.9118 Glycine max 7910 9440 XP_002518592255761086 0.8824 Ricinus communis 7911 XP_002534445 255761086 0.8873Ricinus communis 7912 AAD38143 5031274 0.8676 Prunus armeniaca 7913 9441XP_002283286 225461208 0.8627 Vitis vinifera 7914 9442 ABN12320124488471 0.848 Gossypium hirsutum 7915 9443 XP_002867516 2978536360.8578 Arabidopsis lyrata 7916 subsp. lyrata 39-62 AAD49742 5733805 1Pisum sativum 7917 9444 AAM97354 22476945 0.9894 Pisum sativum 7918 9445AAD33959 4929351 0.9814 Pisum sativum 7919 9446 ACU21225 2556419120.9204 Glycine max 7920 9447 XP_002313052 255761085 0.9072 Populustrichocarpa 7921 XP_002284375 225428500 0.8992 Vitis vinifera 7922 9448XP_002509478 255761086 0.8992 Ricinus communis 7923 XP_002306098255761085 0.8992 Populus trichocarpa 7924 P93563 0.8674 Solanumtuberosum 7925 P93397 0.87 Nicotiana tabacum 7926 180-203 ACC85689186477889 1 Medicago truncatula 7927 9449 NP_001235733 351734425 0.8957Glycine max 7928 9450 XP_002318640 255761085 0.872 Populus trichocarpa7929 XP_002322155 255761085 0.8768 Populus trichocarpa 7930 AEQ62558352740725 0.8815 Aquilaria microcarpa 7931 9451 NP_001048088 1154486160.8483 Oryza sativa 7932 9452 Japonica Group NP_201093 186532680 0.8531Arabidopsis thaliana 7933 9453 NP_566897 30692961 0.8483 Arabidopsisthaliana 7934 9454 CAD42725 27527522 0.8436 Nicotiana tabacum 7935 9455XP_002511439 255761086 0.8578 Ricinus communis 7936 819-842 NP_001235100351727055 1 Glycine max 7937 9456 CBZ41765 323669526 0.8864 Glycine max7938 9457 CCD42020 347630190 0.8701 Glycine max 7939 9458 180-203ACC85689 186477889 1 Medicago truncatula 7940 9459 429-452 NP_001238108351725208 1 Glycine max 7941 9460 NP_001238275 351722648 0.9264 Glycinemax 7942 9461 ath- 1224-1244 ACO48252 226320261 1 Arachis hypogaea 79439462 miRf10687- NP_001237378 351726308 0.889 Glycine max 7944 9463 akrABR29877 149789411 0.8301 Ricinus communis 7945 9464 XP_002280842225423836 0.8205 Vitis vinifera 7946 9465 CAN62388 147809569 0.8127Vitis vinifera 7947 XP_002893416 297853636 0.7954 Arabidopsis lyrata7948 subsp. lyrata XP_002888679 297853636 0.7597 Arabidopsis lyrata 7949subsp. lyrata NP_177043 42563058 0.7558 Arabidopsis thaliana 7950 9466ACT54615 254032061 0.779 Brassica napus 7951 9467 ACN39927 2242843840.7413 Picea sitchensis 7952 9468 735-755 ACU24612 255648320 1 Glycinemax 7953 9469 ACU19270 255637904 0.771 Glycine max 7954 9470XP_002311695 255761085 0.7252 Populus trichocarpa 7955 585-605 ACU18495255636311 1 Glycine max 7956 9471 1116-1136 ACJ85683 217074645 1Medicago truncatula 7957 9472 NP_001235116 351727520 0.8244 Glycine max7958 9473 BAD81043 56744206 0.8189 Glycine max 7959 9474 O82709 0.8743Pisum sativum 7960 AAK84429 31321895 0.7301 Brassica napus 7961 9475XP_002866454 297853636 0.7227 Arabidopsis lyrata 7962 subsp. lyrataNP_200987 145359541 0.7246 Arabidopsis thaliana 7963 9476 XP_002511066255761086 0.7301 Ricinus communis 7964 XP_002277666 225447724 0.7227Vitis vinifera 7965 9477 CAN83091 147858622 0.7227 Vitis vinifera 79669478 363-383 NP_001238368 351734499 1 Glycine max 7967 9479 291-311NP_001237352 351734505 1 Glycine max 7968 9480 AAC32262 3426303 0.7348Pisum sativum 7969 9481 NP_001238058 351723760 0.7652 Glycine max 79709482 AAV28488 54042994 0.7099 Populus tremula × 7971 9483 Populus albaXP_002518420 255761086 0.7155 Ricinus communis 7972 AAV49801 552761190.7127 Populus trichocarpa × 7973 9484 Populus deltoides ABO33478132424650 0.732 Medicago truncatula 7974 9485 ADC35600 285804238 0.7155Prunus persica 7975 9486 AAG27464 11037019 0.7293 Medicago truncatula7976 9487 XP_002271944 225444459 0.7182 Vitis vinifera 7977 9488 24-44XP_002509851 255761086 1 Ricinus communis 7978 XP_002304516 2557610850.863 Populus trichocarpa 7979 XP_002298015 255761085 0.8527 Populustrichocarpa 7980 XP_002278860 225426165 0.8424 Vitis vinifera 7981 9489AAN65180 25052803 0.8346 Petroselinum crispum 7982 9490 XP_002302599255761085 0.832 Populus trichocarpa 7983 XP_002277669 225454333 0.8269Vitis vinifera 7984 9491 XP_002511904 255761086 0.8217 Ricinus communis7985 ACU20804 255641048 0.8191 Glycine max 7986 9492 Q40353 0.801Medicago sativa 7987 ath-  93-113 AEA92304 327505552 1 Heveabrasiliensis 7988 9493 miRf11037- ADL59582 302595186 0.9815 Heveabrasiliensis 7989 9494 akr XP_002284365 225435057 0.9213 Vitis vinifera7990 9495 CAN64127 147783306 0.9213 Vitis vinifera 7991 9496XP_002534292 255761086 0.9259 Ricinus communis 7992 BAB84326 184479200.9491 Nicotiana tabacum 7993 9497 AEA92307 327505558 0.9213 Heveabrasiliensis 7994 9498 BAB84324 18447916 0.912 Nicotiana tabacum 79959499 XP_002284071 225449602 0.9167 Vitis vinifera 7996 9500 ACU20932255641309 0.9213 Glycine max 7997 9501 mtr- 498-518 ACJ84572 217072423 1Medicago truncatula 7998 9502 miR2119 ACU20200 255639813 0.8895 Glycinemax 7999 9503 XP_002520842 255761086 0.8226 Ricinus communis 8000CBI25388 270236032 0.8072 Vitis vinifera 8001 9504 XP_002325811255761085 0.8046 Populus trichocarpa 8002 Q42967 0.7841 Nicotianatabacum 8003 1J93_A 0.7738 Nicotiana tabacum 8004 XP_002274385 2254486340.7584 Vitis vinifera 8005 9505 XP_002879873 297853636 0.7661Arabidopsis lyrata 8006 subsp. lyrata NP_001050049 115452896 0.7506Oryza sativa 8007 9506 Japonica Group 153-173 CAA80691 452768 1Phaseolus acutifolius 8008 9507 CAA80692 452766 0.9974 Phaseolusacutifolius 8009 9508 AAO72531 29373060 0.9421 Lotus corniculatus 80109509 CAG30579 51587337 0.9395 Lotus japonicus 8011 9510 P13603 0.9237Trifolium repens 8012 P12886 0.9184 Pisum sativum 8013 XP_002309899255761085 0.8868 Populus trichocarpa 8014 XP_002328464 255761085 0.8737Populus trichocarpa 8015 ABK95643 118487635 0.8789 Populus trichocarpa8016 9511 XP_002309900 255761085 0.8763 Populus trichocarpa 8017 osa-514-534 ACU20018 255639446 1 Glycine max 8018 9512 miR2055 ptc- 129-151XP_003527653 356517960 1 Glycine max 8019 9513 miRf10132- XP_003523542356509614 0.7828 Glycine max 8020 9514 akr tae-  89-110 ABC4785883853825 1 Glycine max 8021 9515 miR2003 1828-1849 ABC47841 83853806 1Glycine max 8022 9516 XP_002283105 225438780 0.7143 Vitis vinifera 80239517 BAJ53195 317106690 0.7032 Jatropha curcas 8024 XP_002284923225458677 0.746 Vitis vinifera 8025 9518 BAJ53194 317106690 0.7095Jatropha curcas 8026 XP_002301171 255761085 0.7524 Populus trichocarpa8027 XP_002327166 255761085 0.746 Populus trichocarpa 8028 CBI19489270252251 0.7397 Vitis vinifera 8029 XP_002510185 255761086 0.7111Ricinus communis 8030 AAK30205 13560782 0.7016 Daucus carota 8031 9519osa- 166-186 AAA74456 500752 1 Phaseolus vulgaris 8032 9520 miRf11829-XP_003529397 356521507 0.933 Glycine max 8033 9521 akr XP_003518837356500028 0.9175 Glycine max 8034 9522 XP_003607969 357475366 0.8763Medicago truncatula 8035 9523 AAB50233 1906001 0.9021 Glycine max 80369524 CAC06095 9968472 0.8797 Lotus japonicus 8037 9525 ADJ68001300119951 0.8488 Gossypium hirsutum 8038 9526 XP_002518763 2557610860.8265 Ricinus communis 8039 XP_002330328 255761085 0.8196 Populustrichocarpa 8040 ABK95605 118487556 0.8179 Populus trichocarpa 8041 9527134-154 CBI32147 270260094 1 Vitis vinifera 8042 9528 XP_002315592255761085 0.8512 Populus trichocarpa 8043 XP_003556331 356576422 0.8095Glycine max 8044 9529 XP_002262666 225424668 0.9683 Vitis vinifera 80459530 XP_002312609 255761085 0.8333 Populus trichocarpa 8046 XP_003536266356535465 0.8036 Glycine max 8047 9531 XP_003590703 357440850 0.8472Medicago truncatula 8048 9532 ADN33838 307135962 0.871 Cucumis melo 80499533 subsp. melo ACF86937 194705705 0.756 Zea mays 8050 9534NP_001152185 226494944 0.7421 Zea mays 8051 9535 345-365 XP_003522862356508229 1 Glycine max 8052 9536 XP_003533465 356529778 0.9262 Glycinemax 8053 9537 302-322 XP_003546711 356556804 1 Glycine max 8054 9538XP_003542817 356548860 0.9169 Glycine max 8055 9539 XP_003627885357515192 0.7569 Medicago truncatula 8056 9540 236-256 XP_003526444356515512 1 Glycine max 8057 CBI20954 270231236 0.7572 Vitis vinifera8058 XP_003603503 357466436 0.758 Medicago truncatula 8059 XP_002516594255761086 0.7337 Ricinus communis 8060 XP_002308627 255761085 0.7281Populus trichocarpa 8061 XP_002282016 225430126 0.756 Vitis vinifera8062 564-584 XP_002509464 255761086 1 Ricinus communis 8063 XP_002329785255761085 0.8641 Populus trichocarpa 8064 XP_003543041 356549318 0.8345Glycine max 8065 9541 XP_002305792 255761085 0.8746 Populus trichocarpa8066 XP_003545990 356555337 0.8537 Glycine max 8067 9542 NP_19383030685267 0.8084 Arabidopsis thaliana 8068 9543 AAL38704 17528987 0.8066Arabidopsis thaliana 8069 9544 XP_002869916 297853636 0.8049 Arabidopsislyrata 8070 subsp. lyrata ABF69959 102139737 0.7787 Musa acuminata 80719545 XP_002863589 297853636 0.7805 Arabidopsis lyrata 8072 subsp. lyrata 92-112 AAT35563 47558925 1 Phaseolus vulgaris 8073 9546 NP_001237920351727189 0.8889 Glycine max 8074 9547 XP_003556188 356576132 0.8468Glycine max 8075 9548 CAA06615 3413499 0.7387 Pisum sativum 8076 954930-50 XP_003530858 356524482 1 Glycine max 8077 9550 123-143XP_003629209 357517840 1 Medicago truncatula 8078 9551 XP_003520082356502550 0.8531 Glycine max 8079 9552 XP_003547906 356559235 0.8431Glycine max 8080 9553 CBI20672 270231236 0.7496 Vitis vinifera 8081XP_002279909 225429561 0.7613 Vitis vinifera 8082 9554 XP_002516094255761086 0.7963 Ricinus communis 8083 BAK61816 343887266 0.7947 Citrusunshiu 8084 9555 XP_002308543 255761085 0.7813 Populus trichocarpa 8085XP_002873542 297853636 0.7496 Arabidopsis lyrata 8086 subsp. lyrataNP_568256 18416731 0.7379 Arabidopsis thaliana 8087 9556 427-447ACI23460 207113464 1 Glycine soja 8088 9557 XP_003544485 3565522570.9828 Glycine max 8089 9558 NP_001235613 351727089 0.8798 Glycine max8090 9559 ACU20715 255640864 0.8197 Glycine max 8091 9560 212-232NP_001236871 351726450 1 Glycine max 8092 9561 XP_003523441 3565094060.9197 Glycine max 8093 9562 ACS94038 242877144 0.8294 Cicer arietinum8094 9563 XP_003602038 357463512 0.8261 Medicago truncatula 8095 9564ACD39411 187940570 0.7759 Arachis hypogaea 8096 9565 AER45736 3549920340.786 Medicago sativa 8097 9566 XP_002520341 255761086 0.7425 Ricinuscommunis 8098 AEF80001 333696915 0.7258 Corylus heterophylla 8099 9567ACI15342 206584338 0.7324 Gossypium hirsutum 8100 9568 ADL36795302399000 0.7492 Malus × domestica 8101 9569 616-636 XP_003534059356530984 1 Glycine max 8102 9570 XP_003548267 356559966 0.8665 Glycinemax 8103 9571 XP_003619718 357498858 0.7211 Medicago truncatula 81049572 118-138 XP_003589961 357439368 1 Medicago truncatula 8105 9573XP_003535239 356533372 0.8081 Glycine max 8106 9574 XP_003519713356501802 0.8046 Glycine max 8107 9575 XP_002514955 255761086 0.7729Ricinus communis 8108 XP_002315622 255761085 0.7817 Populus trichocarpa8109 CAA58823 639833 0.7676 Solanum tuberosum 8110 9576 NP_001148767226532264 0.7588 Zea mays 8111 9577 XP_003557368 357111130 0.7588Brachypodium distachyon 8112 9578 BAJ94094 326490040 0.7711 Hordeumvulgare 8113 9579 subsp. vulgare NP_196470 145357793 0.7835 Arabidopsisthaliana 8114 9580  92-112 XP_003597553 357454544 1 Medicago truncatula8115 9581 XP_003542066 356547327 0.8553 Glycine max 8116 9582XP_003546745 356556873 0.8496 Glycine max 8117 9583 XP_002514088255761086 0.8177 Ricinus communis 8118 Q9MT28 0.7857 Solanum tuberosum8119 XP_002285366 225430389 0.8233 Vitis vinifera 8120 9584 NP_194713145349228 0.7989 Arabidopsis thaliana 8121 9585 AAB04607 1448916 0.7989Arabidopsis thaliana 8122 9586 XP_002867385 297853636 0.7989 Arabidopsislyrata 8123 subsp. lyrata 2C2B_A 0.7763 Arabidopsis thaliana 8124135-155 XP_003541398 356545954 1 Glycine max 8125 9587 142-162 AAB502331906001 1 Glycine max 8126 9588 P38500 0.8037 Betula pendula 8127123-143 XP_003547906 356559235 1 Glycine max 8128 9589 XP_003629209357517840 0.8837 Medicago truncatula 8129 9590

TABLE 10 Target Genes of down-regulated Small RNA Molecules Associatedwith Abiotic Stress Tolerance in Soybean Plants. Mir Homolog NucleotideBinding NCBI NCBI GI Protein Nucleotide Mir Name Position Accessionnumber Identity Organism Seq id no: Seq id no: aly- 116-136 XP_003531153356525075 1 Glycine max 9591 10365 miR160c- XP_003524859 3565123010.936170213 Glycine max 9592 10366 3p ABO61516 134142361 0.932301741Glycine max 9593 10367 BAF62636 148189857 0.868471954 Phaseolus vulgaris9594 10368 ABI34432 113206403 0.785299807 Pisum sativum 9595 10369XP_002312450 255761085 0.767891683 Populus trichocarpa 9596 XP_002284648225424290 0.735009671 Vitis vinifera 9597 10370 BAG16374 1717028360.721470019 Brassica oleracea 9598 10371 var. italica AEK06229 3397792280.733075435 Vitis vinifera 9599 10372 bdi- 699-720 XP_003600994357461424 1 Medicago truncatula 9600 10373 miR2508 XP_003538485356540010 0.862608696 Glycine max 9601 10374 NP_001236616 3517264770.850434783 Glycine max 9602 10375 XP_003519418 356501206 0.810434783Glycine max 9603 10376 XP_003544045 356551362 0.812173913 Glycine max9604 10377 XP_003616702 357492826 0.803478261 Medicago truncatula 960510378 XP_002520796 255761086 0.76 Ricinus communis 9606 XP_002315131255761085 0.766956522 Populus trichocarpa 9607 ABK92474 1184810400.768695652 Populus trichocarpa 9608 10379 XP_002312186 2557610850.765217391 Populus trichocarpa 9609 719-740 XP_003520941 356504312 1Glycine max 9610 10380 XP_003520942 356504314 0.820557491 Glycine max9611 10381 XP_003516921 356496125 0.740418118 Glycine max 9612 1038273-94 XP_003540719 356544563 1 Glycine max 9613 10383 XP_003539077356541217 0.940068493 Glycine max 9614 10384 XP_003606701 3574728320.821917808 Medicago truncatula 9615 10385 CBI16224 2702270420.741438356 Vitis vinifera 9616 CAN60348 147789065 0.731164384 Vitisvinifera 9617 10386 XP_002313424 255761085 0.75 Populus trichocarpa 9618XP_002284473 225435091 0.729452055 Vitis vinifera 9619 10387XP_002278215 225449449 0.731164384 Vitis vinifera 9620 10388 CBI16199270227042 0.724315068 Vitis vinifera 9621 651-672 XP_003516921 3564961251 Glycine max 9622 10389 XP_003520941 356504312 0.75308642 Glycine max9623 10390 77-98 XP_003522150 356506771 1 Glycine max 9624 10391XP_003516941 356496165 0.967684022 Glycine max 9625 10392 XP_003604619357468668 0.845601436 Medicago truncatula 9626 10393 XP_002322961255761085 0.782764811 Populus trichocarpa 9627 XP_002533894 2557610860.763016158 Ricinus communis 9628 XP_002278638 225440625 0.782764811Vitis vinifera 9629 10394 XP_002322962 255761085 0.777378815 Populustrichocarpa 9630 XP_002308209 255761085 0.771992819 Populus trichocarpa9631 XP_003552227 356568050 0.822262118 Glycine max 9632 10395 AAC495361685086 0.755834829 Nicotiana tabacum 9633 10396  86-107 CAN73336147800866 1 Vitis vinifera 9634 XP_002282815 225449411 0.990859232 Vitisvinifera 9635 10397 XP_002282823 225449413 0.946983547 Vitis vinifera9636 10398 XP_002278232 225449451 0.936014625 Vitis vinifera 9637 10399CAN60069 147779995 0.92321755 Vitis vinifera 9638 CAN72263 1478214630.92321755 Vitis vinifera 9639 10400 XP_002278275 225449453 0.91773309Vitis vinifera 9640 10401 585-606 XP_003516921 356496125 1 Glycine max9641 10402 549-570 XP_003606701 357472832 1 Medicago truncatula 964210403 XP_003540719 356544563 0.839316239 Glycine max 9643 10404XP_003623041 357505504 0.733333333 Medicago truncatula 9644 10405XP_003551448 356566457 0.714529915 Glycine max 9645 10406 XP_003532315356527432 0.712820513 Glycine max 9646 10407 164-185 XP_003529133356520972 1 Glycine max 9647 10408 XP_003552215 356568025 0.954385965Glycine max 9648 10409 XP_003529131 356520968 0.722807018 Glycine max9649 10410 ABC59623 84626065 0.721052632 Pisum sativum 9650 104113846-3867 XP_003551446 356566453 1 Glycine max 9651 699-720 XP_003600994357461424 1 Medicago truncatula 9652 10412 261-282 XP_003520941356504312 1 Glycine max 9653 10413 576-597 XP_003604619 357468668 1Medicago truncatula 9654 10414 XP_003522150 356506771 0.845601436Glycine max 9655 10415 XP_002308208 255761085 0.777378815 Populustrichocarpa 9656  0-21 XP_003516941 356496165 1 Glycine max 9657 10416645-666 CBI16199 270227042 1 Vitis vinifera 9658 CAN80346 1478580240.924028269 Vitis vinifera 9659 10417 XP_003552160 356567914 0.85335689Glycine max 9660 10418 XP_002329138 255761085 0.846289753 Populustrichocarpa 9661 XP_002299296 255761085 0.85335689 Populus trichocarpa9662 XP_002531824 255761086 0.848056537 Ricinus communis 9663 690-711XP_003530212 356523164 1 Glycine max 9664 10419 XP_003551482 3565665260.955094991 Glycine max 9665 10420 XP_002308164 255761085 0.778929188Populus trichocarpa 9666 XP_002531565 255761086 0.772020725 Ricinuscommunis 9667 CAA74105 3805963 0.773747841 Populus trichocarpa 966810421 XP_002300066 255761085 0.730569948 Populus trichocarpa 9669681-702 XP_003530213 356523166 1 Glycine max 9670 10422 XP_003552179356567952 0.915447154 Glycine max 9671 10423 XP_003532290 3565273810.765853659 Glycine max 9672 10424 XP_002309069 255761085 0.733333333Populus trichocarpa 9673 XP_002531562 255761086 0.726829268 Ricinuscommunis 9674 XP_002271006 225440401 0.713821138 Vitis vinifera 967510425 XP_002268628 225440403 0.713821138 Vitis vinifera 9676 10426XP_002269038 225440405 0.707317073 Vitis vinifera 9677 10427 CBI30529270242856 0.704065041 Vitis vinifera 9678 651-672 XP_003551482 3565665261 Glycine max 9679 10428 XP_003530212 356523164 0.960069444 Glycine max9680 10429 666-687 XP_003539958 356543013 1 Glycine max 9681 10430XP_003551299 356566152 0.941605839 Glycine max 9682 10431 XP_003518300356498931 0.879562044 Glycine max 9683 10432 XP_003544873 3565530530.881386861 Glycine max 9684 10433 XP_003615575 357490574 0.855839416Medicago truncatula 9685 10434 XP_002520425 255761086 0.822992701Ricinus communis 9686 XP_002314124 255761085 0.812043796 Populustrichocarpa 9687 XP_002299828 255761085 0.813868613 Populus trichocarpa9688 XP_002280416 225434677 0.79379562 Vitis vinifera 9689 10435  86-107CAN73336 147800866 1 Vitis vinifera 9690 121-142 XP_003615575 3574905741 Medicago truncatula 9691 10436 XP_003539958 356543013 0.777403035Glycine max 9692 10437 1113-1134 XP_003548937 356561332 1 Glycine max9693 10438 XP_003519950 356502284 0.814741036 Glycine max 9694 10439XP_002319173 255761085 0.802788845 Populus trichocarpa 9695 XP_002325825255761085 0.794820717 Populus trichocarpa 9696 CAN70030 1478215790.790836653 Vitis vinifera 9697 10440 XP_002525455 255761086 0.778884462Ricinus communis 9698 XP_002304847 255761085 0.780876494 Populustrichocarpa 9699 XP_003625586 357510594 0.784860558 Medicago truncatula9700 10441 XP_003607828 357475084 0.778884462 Medicago truncatula 970110442 XP_002523396 255761086 0.782868526 Ricinus communis 9702 633-654XP_003551299 356566152 1 Glycine max 9703 10443 1051-1072 XP_003520176356502743 1 Glycine max 9704 10444 XP_003528495 356519673 0.93444227Glycine max 9705 10445 XP_003608057 357475542 0.777886497 Medicagotruncatula 9706 10446 636-657 XP_003552213 356568021 1 Glycine max 970710447 XP_003529132 356520970 0.732517483 Glycine max 9708 10448XP_003552214 356568023 0.723776224 Glycine max 9709 10449 XP_003529133356520972 0.708041958 Glycine max 9710 10450 666-687 XP_003544873356553053 1 Glycine max 9711 10451 666-687 XP_003552227 356568050 1Glycine max 9712 10452 777-798 XP_003529132 356520970 1 Glycine max 971310453 XP_003552213 356568021 0.708551483 Glycine max 9714 10454 654-675XP_003552215 356568025 1 Glycine max 9715 10455 660-681 XP_003529131356520968 1 Glycine max 9716 10456 636-657 XP_003539077 356541217 1Glycine max 9717 10457 XP_003551449 356566459 0.712328767 Glycine max9718 10458 693-714 XP_003538485 356540010 1 Glycine max 9719 10459CBI25418 270236032 0.785349233 Vitis vinifera 9720 10460 567-588XP_003552179 356567952 1 Glycine max 9721 10461 XP_003530213 3565231660.964041096 Glycine max 9722 10462 gma- 138-158 XP_003527195 356517033 1Glycine max 9723 10463 miR2119 XP_003527162 356516966 0.885620915Glycine max 9724 10464 XP_003527196 356517035 0.866013072 Glycine max9725 10465 XP_003522929 356508367 0.81372549 Glycine max 9726 10466XP_003522930 356508369 0.839869281 Glycine max 9727 10467 ACU24029255647121 0.833333333 Glycine max 9728 10468 157-177 XP_003542005356547201 1 Glycine max 9729 10469 ACU18712 255636755 0.994722955Glycine max 9730 10470 XP_003545664 356554663 0.939313984 Glycine max9731 10471 AAN03476 22597177 0.936675462 Glycine max 9732 10472XP_003544738 356552774 0.802110818 Glycine max 9733 10473 AAO7253129373060 0.807387863 Lotus corniculatus 9734 10474 CAA80691 4527680.799472296 Phaseolus acutifolius 9735 10475 CAG30579 515873370.80474934 Lotus japonicus 9736 10476 AET21261 356582741 0.802110818Lotus japonicus 9737 10477 P13603 0.799472296 Trifolium repens 9738526-546 XP_003521584 356505611 1 Glycine max 9739 10478 XP_003554536356572764 0.971098266 Glycine max 9740 10479 XP_003536003 3565349280.809248555 Glycine max 9741 10480 XP_003518934 356500225 0.800578035Glycine max 9742 10481 XP_002302739 255761085 0.789017341 Populustrichocarpa 9743 XP_002320324 255761085 0.777456647 Populus trichocarpa9744 NP_191825 145339785 0.757225434 Arabidopsis thaliana 9745 10482XP_002876684 297853636 0.757225434 Arabidopsis lyrata 9746 subsp. lyrataXP_002872855 297853636 0.760115607 Arabidopsis lyrata 9747 subsp. lyrataCAB83116 7362737 0.748554913 Arabidopsis thaliana 9748 10483 2061-2081XP_003524240 356511040 1 Glycine max 9749 10484 XP_003532800 3565284170.955097087 Glycine max 9750 10485 XP_003630005 357519432 0.82038835Medicago truncatula 9751 10486 XP_002317684 255761085 0.770631068Populus trichocarpa 9752 XP_002332198 255761085 0.766990291 Populustrichocarpa 9753 XP_003533825 356530512 0.769417476 Glycine max 975410487 XP_003547559 356558531 0.764563107 Glycine max 9755 10488XP_002271023 225444212 0.751213592 Vitis vinifera 9756 10489 399-419XP_003539263 356541601 1 Glycine max 9757 10490 XP_003517354 3564970020.913716814 Glycine max 9758 10491 XP_003611556 357482538 0.767699115Medicago truncatula 9759 10492 CAI79403 62700758 0.71460177 Sennaoccidentalis 9760 10493 265-285 XP_003554536 356572764 1 Glycine max9761 10494 XP_003521584 356505611 0.971098266 Glycine max 9762 10495XP_003625940 357511302 0.75433526 Medicago truncatula 9763 10496 159-179XP_003545664 356554663 1 Glycine max 9764 10497 XP_003542005 3565472010.959568733 Glycine max 9765 10498 P12886 0.789757412 Pisum sativum 9766360-380 AAO83155 29365515 1 Phaseolus vulgaris 9767 10499 XP_003534097356531061 0.870201097 Glycine max 9768 10500 XP_003548308 3565600480.886654479 Glycine max 9769 10501 2055-2075 XP_003532800 356528417 1Glycine max 9770 10502 XP_003524240 356511040 0.955097087 Glycine max9771 10503 2157-2177 XP_003547559 356558531 1 Glycine max 9772 10504174-194 XP_003517354 356497002 1 Glycine max 9773 10505 XP_003539263356541601 0.919821826 Glycine max 9774 10506 gso- 22-42 AAU9508053830374 1 Glycine max 9775 10507 miR482a 22-42 AAF44087 7263110 1Glycine max 9776 10508 AAX81296 62361234 0.714285714 Arachis hypogaea9777 10509 1195-1215 NP_001237600 351725318 1 Glycine max 9778 10510XP_003556265 356576288 0.891737892 Glycine max 9779 10511 XP_003591822357443088 0.811965812 Medicago truncatula 9780 10512 ACI46678 2094197480.811965812 Galega orientalis 9781 10513 XP_003518682 3564997140.740740741 Glycine max 9782 10514 XP_003516851 356495985 0.752136752Glycine max 9783 10515 XP_003614455 357488334 0.732193732 Medicagotruncatula 9784 10516 503-523 XP_003533606 356530067 1 Glycine max 978510517 59-79 XP_003518623 356499593 1 Glycine max 9786 10518 XP_003591325357442094 0.832673267 Medicago truncatula 9787 10519 XP_003626036357511494 0.751485149 Medicago truncatula 9788 10520 XP_002515202255761086 0.7 Ricinus communis 9789 22-42 AAF44087 7263110 1 Glycine max9790 10521 osa- 342-362 XP_003590416 357440276 1 Medicago truncatula9791 10522 miR162a XP_003554409 356572505 0.775075988 Glycine max 979210523 XP_003521428 356505296 0.767477204 Glycine max 9793 10524XP_003625731 357510884 0.770516717 Medicago truncatula 9794 10525XP_002264567 225441081 0.734042553 Vitis vinifera 9795 10526XP_003541439 356546037 0.759878419 Glycine max 9796 10527 CAN74141147838148 0.705167173 Vitis vinifera 9797 XP_002519415 2557610860.703647416 Ricinus communis 9798 619-639 XP_003528812 356520321 1Glycine max 9799 10528 XP_003528810 356520317 0.979865772 Glycine max9800 10529 XP_003548576 356560594 0.976510067 Glycine max 9801 10530XP_003543259 356549760 0.963087248 Glycine max 9802 10531 XP_003543258356549758 0.959731544 Glycine max 9803 10532 ACU23594 2556462180.966442953 Glycine max 9804 10533 ACJ85054 217073389 0.89261745Medicago truncatula 9805 10534 XP_002329431 255761085 0.879194631Populus trichocarpa 9806 XP_003604056 357467542 0.848993289 Medicagotruncatula 9807 10535 XP_002524558 255761086 0.82885906 Ricinus communis9808 585-605 XP_003543259 356549760 1 Glycine max 9809 10536XP_003528812 356520321 0.963087248 Glycine max 9810 10537 XP_002330691255761085 0.859060403 Populus trichocarpa 9811 1037-1057 XP_002311013255761085 1 Populus trichocarpa 9812 XP_002315438 255761085 0.935779817Populus trichocarpa 9813 XP_002521182 255761086 0.862385321 Ricinuscommunis 9814 XP_003536707 356536360 0.834862385 Glycine max 9815 10538XP_003555872 356575487 0.830275229 Glycine max 9816 10539 XP_002268975225450253 0.811926606 Vitis vinifera 9817 10540 144-164 XP_003548576356560594 1 Glycine max 9818 10541 63-83 XP_003528812 356520321 1Glycine max 9819 10542 217-237 NP_001237819 351724250 1 Glycine max 982010543 NP_001238239 351721616 0.964285714 Glycine max 9821 10544 ACF06595192912973 0.898809524 Elaeis guineensis 9822 10545 Q5J907 0.892857143Elaeis guineensis 9823 ACF06596 192912975 0.904761905 Elaeis guineensis9824 10546 ACF06557 192910897 0.875 Elaeis guineensis 9825 10547XP_003577266 357155873 0.845238095 Brachypodium distachyon 9826 10548XP_002516930 255761086 0.857142857 Ricinus communis 9827 AEH05972334854631 0.863095238 Hevea brasiliensis 9828 10549 NP_001235906351720717 0.851190476 Glycine max 9829 10550 osa- 615-634 XP_003531377356525528 1 Glycine max 9830 10551 miR1846e XP_003525073 3565127370.958823529 Glycine max 9831 10552 XP_002310600 255761085 0.785294118Populus trichocarpa 9832 XP_002307126 255761085 0.8 Populus trichocarpa9833 XP_002280295 225438578 0.808823529 Vitis vinifera 9834 10553XP_003523264 356509047 0.826470588 Glycine max 9835 10554 AAZ6692337694873 0.708823529 Brassica rapa 9836 10555 ACK44524 2174267870.708823529 Arabidopsis arenosa 9837 10556 XP_002871399 297853636 0.7Arabidopsis lyrata 9838 subsp. lyrata NP_196563 145357839 0.702941176Arabidopsis thaliana 9839 10557 379-398 XP_003531668 356526120 1 Glycinemax 9840 10558 XP_003529761 356522251 0.915980231 Glycine max 9841 10559XP_003530142 356523023 0.756177924 Glycine max 9842 10560 XP_003546477356556325 0.73476112 Glycine max 9843 10561 XP_003531667 3565261180.731466227 Glycine max 9844 10562 114-133 XP_003529761 356522251 1Glycine max 9845 10563 XP_003531668 356526120 0.917491749 Glycine max9846 10564 XP_003597728 357454894 0.724422442 Medicago truncatula 984710565 367-386 XP_003530142 356523023 1 Glycine max 9848 10566XP_003597726 357454890 0.700490998 Medicago truncatula 9849 10567 osa-256-277 NP_001105847 162464254 1 Zea mays 9850 miR2104 ABA42672 764439280.881188119 Zea mays 9851 Q2N2K2 0.927392739 Glycine max 9852XP_002447301 255761094 0.907590759 Sorghum bicolor 9853 ACG23902195604143 0.811881188 Zea mays 9854 10568 256-277 NP_001105847 1624642541 Zea mays 9855 10569 osa- 103-122 ABU94631 156754274 1 Phaseolusvulgaris 9856 10570 miRf11415- XP_003536353 356535640 0.944250871Glycine max 9857 10571 akr XP_003556232 356576220 0.951219512 Glycinemax 9858 10572 ACU24483 255648054 0.947735192 Glycine max 9859 10573AAC17529 3158475 0.919860627 Samanea saman 9860 10574 ACJ85173 2170736250.905923345 Medicago truncatula 9861 10575 XP_003548070 3565595660.891986063 Glycine max 9862 10576 BAB40143 13486941 0.888501742 Pyruscommunis 9863 10577 ACU20229 255639872 0.891986063 Glycine max 986410578 BAD90699 60498688 0.898954704 Mimosa pudica 9865 10579 ctr-miR171477-497 XP_003538071 356539165 1 Glycine max 9866 10580 XP_003517966356498249 0.849056604 Glycine max 9867 10581 pta- 17-37 XP_003627005357513432 1 Medicago truncatula 9868 10582 miR166c XP_003531652356526088 0.921875 Glycine max 9869 10583 XP_003530109 3565229570.923076923 Glycine max 9870 10584 XP_003530112 356522963 0.913461538Glycine max 9871 10585 ACI13685 206572104 0.889423077 Malus × domestica9872 10586 XP_003597690 357454818 0.894230769 Medicago truncatula 987310587 XP_002515977 255761086 0.887019231 Ricinus communis 9874XP_002284003 225442500 0.890625 Vitis vinifera 9875 10588 CBI36079270253379 0.890625 Vitis vinifera 9876 XP_003531653 3565260900.900240385 Glycine max 9877 10589  87-107 CAN73584 147820217 1 Vitisvinifera 9878 XP_002281868 225444032 1 Vitis vinifera 9879 10590XP_002298892 255761085 0.918343195 Populus trichocarpa 9880 XP_002332526255761085 0.90887574 Populus trichocarpa 9881 XP_003535078 3565330420.880473373 Glycine max 9882 10591 XP_003546255 356555874 0.882840237Glycine max 9883 10592 AAS66760 45479745 0.878106509 Nicotianasylvestris 9884 10593 XP_003532788 356528393 0.852071006 Glycine max9885 10594 XP_003524993 356512573 0.840236686 Glycine max 9886 10595ACI13683 206572100 0.820118343 Malus × domestica 9887 10596 40-60AAS10176 41745611 1 Antirrhinum majus 9888 10597 1228-1248 XP_002285176225435326 1 Vitis vinifera 9889 10598 CAN61612 147783603 0.981042654Vitis vinifera 9890 XP_002529946 255761086 0.918246445 Ricinus communis9891 XP_003538150 356539326 0.892180095 Glycine max 9892 10599XP_003539764 356542618 0.895734597 Glycine max 9893 10600 ACI13684206572102 0.888625592 Malus × domestica 9894 10601 XP_003539765356542620 0.890995261 Glycine max 9895 10602 AAX19050 603276200.881516588 Populus trichocarpa 9896 10603 DAA05766 1097299040.853080569 Lotus japonicus 9897 AAY33856 63115353 0.8507109 Gossypiumbarbadense 9898 10604 557-577 XP_002298892 255761085 1 Populustrichocarpa 9899 CAN73584 147820217 0.91943128 Vitis vinifera 9900515-535 XP_003597690 357454818 1 Medicago truncatula 9901 10605XP_002284014 225442502 0.897129187 Vitis vinifera 9902 10606XP_002304217 255761085 0.888755981 Populus trichocarpa 9903 560-580XP_002285176 225435326 1 Vitis vinifera 9904 10607 554-574 XP_003603630357466690 1 Medicago truncatula 9905 10608 XP_003522716 3565079300.943645084 Glycine max 9906 10609 XP_003526496 356515618 0.940047962Glycine max 9907 10610 ACI13686 206572106 0.872901679 Malus × domestica9908 10611 ADL36609 302398628 0.863309353 Malus × domestica 9909 10612CBI20838 270231236 0.862110312 Vitis vinifera 9910 XP_002283717225429913 0.862110312 Vitis vinifera 9911 10613 ACL51017 2198793690.858513189 Citrus trifoliata 9912 10614 XP_002309538 2557610850.868105516 Populus trichocarpa 9913 XP_002324794 255761085 0.857314149Populus trichocarpa 9914 40-60 AAS10176 41745611 1 Antirrhinum majus9915 10615 554-574 XP_003530109 356522957 1 Glycine max 9916 10616590-610 XP_003524993 356512573 1 Glycine max 9917 10617 XP_003594520357448488 0.781946073 Medicago truncatula 9918 10618 25-45 XP_003522716356507930 1 Glycine max 9919 10619 XP_003603630 357466690 0.932464455Medicago truncatula 9920 10620 560-580 XP_003530112 356522963 1 Glycinemax 9921 10621 530-550 XP_003532788 356528393 1 Glycine max 9922 10622 87-107 CAN73584 147820217 1 Vitis vinifera 9923 566-586 XP_003531653356526090 1 Glycine max 9924 10623 560-580 XP_003539764 356542618 1Glycine max 9925 10624 XP_002285176 225435326 0.894674556 Vitis vinifera9926 10625 CAC84906 18076735 0.829585799 Zinnia violacea 9927 10626828-848 XP_003539765 356542620 1 Glycine max 9928 10627 ptc-  81-100XP_003548151 356559731 1 Glycine max 9929 10628 miRf10976- XP_003529873356522477 0.888 Glycine max 9930 10629 akr XP_003548400 3565602360.849333333 Glycine max 9931 10630 249-268 NP_001238468 351720798 1Glycine max 9932 10631 242-261 XP_003520705 356503828 1 Glycine max 993310632 XP_003553607 356570870 0.874626866 Glycine max 9934 10633 295-314XP_003533044 356528917 1 Glycine max 9935 10634 XP_003529756 3565222410.905759162 Glycine max 9936 10635 XP_003543627 356550505 0.732984293Glycine max 9937 10636 XP_003546548 356556469 0.722513089 Glycine max9938 10637 XP_003597684 357454806 0.712041885 Medicago truncatula 993910638 XP_003597685 357454808 0.701570681 Medicago truncatula 9940 10639268-287 XP_003528486 356519654 1 Glycine max 9941 10640 XP_003520183356502757 0.899071926 Glycine max 9942 10641 ptc- 66-85 XP_003524954356512494 1 Glycine max 9943 10642 miRf11018- XP_003531241 3565252520.920604915 Glycine max 9944 10643 akr AET04202 357518874 0.797731569Medicago truncatula 9945 10644 AET04197 357518864 0.752362949 Medicagotruncatula 9946 10645 AET04200 357518870 0.756143667 Medicago truncatula9947 10646 ptc- 1236-1255 XP_002275990 225451234 1 Vitis vinifera 994810647 miRf11669- XP_002512253 255761086 0.916923077 Ricinus communis9949 akr XP_003554689 356573071 0.895384615 Glycine max 9950 10648XP_002319618 255761085 0.916923077 Populus trichocarpa 9951 XP_002336146255761085 0.895384615 Populus trichocarpa 9952 XP_002328363 2557610850.895384615 Populus trichocarpa 9953 ACU22789 255644572 0.886153846Glycine max 9954 10649 ADN33908 307136046 0.898461538 Cucumis melo 995510650 subsp. melo Q43317 0.898461538 Citrullus lanatus 9956 subsp.vulgaris XP_002311629 255761085 0.901538462 Populus trichocarpa 9957259-278 XP_003624868 357509158 1 Medicago truncatula 9958 10651 ACJ85972217075223 0.995098039 Medicago truncatula 9959 10652 XP_003608106357475640 0.965686275 Medicago truncatula 9960 10653 NP_001237278351723416 0.965686275 Glycine max 9961 10654 NP_564149 306875010.931372549 Arabidopsis thaliana 9962 10655 NP_001237990 3517218170.941176471 Glycine max 9963 10656 XP_002890456 297853636 0.926470588Arabidopsis lyrata 9964 subsp. lyrata NP_565156 186496015 0.93627451Arabidopsis thaliana 9965 10657 XP_002887683 297853636 0.931372549Arabidopsis lyrata 9966 subsp. lyrata AAM62756 21404242 0.926470588Arabidopsis thaliana 9967 10658 170-189 XP_003535921 356534761 1 Glycinemax 9968 10659 XP_003519071 356500502 0.968379447 Glycine max 9969 10660XP_002284060 225441833 0.773386034 Vitis vinifera 9970 10661 CAN82225147852313 0.770750988 Vitis vinifera 9971 10662 XP_002532077 2557610860.744400527 Ricinus communis 9972 XP_002323318 255761085 0.737812912Populus trichocarpa 9973 XP_002308029 255761085 0.749670619 Populustrichocarpa 9974 CBI29841 270242856 0.753623188 Vitis vinifera 997510663 NP_565960 18405800 0.723320158 Arabidopsis thaliana 9976 10664XP_002878149 297853636 0.72859025 Arabidopsis lyrata 9977 subsp. lyrata120-139 AAQ57205 34099832 1 Populus tremula × 9978 10665 Populus alba877-896 XP_003526542 356515711 1 Glycine max 9979 10666 XP_003523783356510109 0.846153846 Glycine max 9980 10667 588-607 XP_002264051225429233 1 Vitis vinifera 9981 10668 CAN64867 123673833 0.996763754Vitis vinifera 9982 XP_002513130 255761086 0.877022654 Ricinus communis9983 XP_003525216 356513027 0.83171521 Glycine max 9984 10669XP_003530931 356524629 0.828478964 Glycine max 9985 10670 ACU18834255637002 0.828478964 Glycine max 9986 10671 XP_002319995 2557610850.834951456 Populus trichocarpa 9987 BAH79622 240846167 0.822006472Glycine max 9988 XP_002310364 255761085 0.805825243 Populus trichocarpa9989 XP_003631000 357521422 0.812297735 Medicago truncatula 9990 10672917-936 XP_003548812 356561077 1 Glycine max 9991 10673 XP_003525850356514311 0.700787402 Glycine max 9992 10674 1246-1265 XP_003555457356574646 1 Glycine max 9993 10675 XP_003543286 356549814 0.955497382Glycine max 9994 10676 XP_003617150 357493722 0.756544503 Medicagotruncatula 9995 10677 XP_002272310 225435984 0.712041885 Vitis vinifera9996 10678 CBI24343 270235077 0.712041885 Vitis vinifera 9997 1320-1339XP_003519686 356501748 1 Glycine max 9998 10679 XP_003547896 3565592150.95412844 Glycine max 9999 10680 XP_003547897 356559217 0.95412844Glycine max 10000 10681 XP_003517138 356496566 0.812844037 Glycine max10001 10682 XP_003612325 357484076 0.783486239 Medicago truncatula 1000210683 XP_003629155 357517732 0.798165138 Medicago truncatula 10003 10684XP_003537681 356538378 0.8 Glycine max 10004 10685 602-621 XP_003520116356502619 1 Glycine max 10005 10686 XP_002280702 225438602 0.856050955Vitis vinifera 10006 10687 EAZ28751 54398660 0.829299363 Oryza sativa10007 Japonica Group 214-233 XP_003554103 356571887 1 Glycine max 1000810688 XP_003521108 356504648 0.923076923 Glycine max 10009 10689ACU18694 255636716 0.919230769 Glycine max 10010 10690 XP_003624904357509230 0.807692308 Medicago truncatula 10011 10691 XP_002526199255761086 0.734615385 Ricinus communis 10012 XP_002283307 2254401540.761538462 Vitis vinifera 10013 10692 XP_002307956 2557610850.726923077 Populus trichocarpa 10014 XP_002876377 297853636 0.703846154Arabidopsis lyrata 10015 subsp. lyrata 329-348 XP_003547896 356559215 1Glycine max 10016 10693 XP_003519686 356501748 0.961182994 Glycine max10017 10694 XP_002521706 255761086 0.715341959 Ricinus communis 10018XP_002306425 255761085 0.71349353 Populus trichocarpa 10019 vvi- 209-228XP_003601765 357462966 1 Medicago truncatula 10020 10695 miR394bXP_003538543 356540129 0.843010753 Glycine max 10021 10696 XP_003551172356565895 0.868817204 Glycine max 10022 10697 ACU23751 2556465520.864516129 Glycine max 10023 10698 ACL51019 219879373 0.767741935Citrus trifoliata 10024 10699 ACI13687 206572108 0.761290323 Malus ×domestica 10025 10700 XP_002514903 255761086 0.746236559 Ricinuscommunis 10026 XP_002271194 225425399 0.739784946 Vitis vinifera 1002710701 XP_002297845 255761085 0.750537634 Populus trichocarpa 10028XP_003531199 356525167 0.735483871 Glycine max 10029 10702 1188-1207XP_003551172 356565895 1 Glycine max 10030 10703 256-275 XP_003593155357445754 1 Medicago truncatula 10031 10704 XP_003547599 3565586130.890145396 Glycine max 10032 10705 XP_003547600 356558615 0.890145396Glycine max 10033 10706 XP_003593158 357445760 0.843295638 Medicagotruncatula 10034 10707 NP_567920 186515898 0.81098546 Arabidopsisthaliana 10035 10708 AEG25668 333952413 0.814216478 Gossypium hirsutum10036 10709 AAK68074 14573458 0.809369952 Arabidopsis thaliana 1003710710 ADE22249 292385867 0.822294023 Ageratina adenophora 10038 10711XP_002867182 297853636 0.809369952 Arabidopsis lyrata 10039 subsp.lyrata AEA76434 327422166 0.81098546 Gossypium hirsutum 10040 10712268-287 XP_003524786 356512154 1 Glycine max 10041 10713 XP_002331852255761085 0.762032086 Populus trichocarpa 10042 XP_002316738 2557610850.751336898 Populus trichocarpa 10043 XP_002519740 255761086 0.748663102Ricinus communis 10044 XP_003532647 356528107 0.71657754 Glycine max10045 10714 CAN63784 147790991 0.703208556 Vitis vinifera 10046 10715XP_002273992 225463405 0.703208556 Vitis vinifera 10047 10716 435-454XP_003556143 356576040 1 Glycine max 10048 10717 XP_003556144 3565760420.964285714 Glycine max 10049 10718 XP_003536435 356535807 0.932539683Glycine max 10050 10719 XP_003536434 356535805 0.924603175 Glycine max10051 10720 ACU19073 255637492 0.920634921 Glycine max 10052 10721XP_003556145 356576044 0.94047619 Glycine max 10053 10722 XP_003536436356535809 0.900793651 Glycine max 10054 10723 XP_003556146 3565760460.912698413 Glycine max 10055 10724 XP_003592142 357443728 0.793650794Medicago truncatula 10056 10725 ACU23298 255645607 0.777777778 Glycinemax 10057 10726 475-494 XP_003531199 356525167 1 Glycine max 10058 10727XP_003524898 356512380 0.911699779 Glycine max 10059 10728 ACU17886255635055 0.905077263 Glycine max 10060 10729 1104-1123 XP_003538543356540129 1 Glycine max 10061 10730 123-142 XP_003553643 356570944 1Glycine max 10062 10731 XP_003521540 356505523 0.763779528 Glycine max10063 10732 29-48 NP_001058751 115470304 1 Oryza sativa 10064 10733Japonica Group EAZ02551 54362548 0.987012987 Oryza sativa 10065 IndicaGroup ACG30543 195617425 0.896103896 Zea mays 10066 10734 BAJ93722326533897 0.896103896 Hordeum vulgare 10067 10735 subsp. vulgareXP_002459234 255761094 0.883116883 Sorghum bicolor 10068 XP_003557668357111736 0.896103896 Brachypodium distachyon 10069 10736 ACG28009195612357 0.883116883 Zea mays 10070 10737 ACG24589 1956055170.844155844 Zea mays 10071 10738 XP_003555981 356575711 0.87012987Glycine max 10072 10739 XP_002284176 225438945 0.87012987 Vitis vinifera10073 10740 1029-1048 XP_003524898 356512380 1 Glycine max 10074 107411245-1264 XP_003601765 357462966 1 Medicago truncatula 10075 10742 zma-68-87 XP_002519732 255761086 1 Ricinus communis 10076 miR167uXP_002298511 255761085 0.8183391 Populus trichocarpa 10077 XP_002317300255761085 0.801038062 Populus trichocarpa 10078 XP_002272126 2254634130.788927336 Vitis vinifera 10079 10743 XP_003524790 3565121620.780276817 Glycine max 10080 10744 NP_180988 145360605 0.761245675Arabidopsis thaliana 10081 10745 XP_003532649 356528111 0.780276817Glycine max 10082 10746 XP_002879497 297853636 0.757785467 Arabidopsislyrata 10083 subsp. lyrata NP_568662 30694937 0.742214533 Arabidopsisthaliana 10084 10747 AAL11600 15983463 0.740484429 Arabidopsis thaliana10085 10748 503-522 XP_003556422 356576607 1 Glycine max 10086 10749XP_003556421 356576605 1 Glycine max 10087 10750 XP_003536179 3565352850.754266212 Glycine max 10088 10751 109-128 XP_003533248 356529329 1Glycine max 10089 10752 XP_003547372 356558152 0.944690265 Glycine max10090 10753 XP_003550546 356564612 0.778761062 Glycine max 10091 10754XP_003528627 356519941 0.783185841 Glycine max 10092 10755 XP_003609706357478840 0.765486726 Medicago truncatula 10093 10756 XP_002273305225431819 0.727876106 Vitis vinifera 10094 10757 CBI22951 2702342100.727876106 Vitis vinifera 10095 1585-1604 XP_003550723 356564979 1Glycine max 10096 10758 XP_003550724 356564981 0.985380117 Glycine max10097 10759 XP_003529499 356521718 0.956140351 Glycine max 10098 10760XP_003529500 356521720 0.946393762 Glycine max 10099 10761 XP_003546300356555968 0.819688109 Glycine max 10100 10762 XP_002314972 2557610850.726120858 Populus trichocarpa 10101 CBI22841 270234210 0.730994152Vitis vinifera 10102 XP_002519280 255761086 0.717348928 Ricinus communis10103 335-354 XP_003516798 356495878 1 Glycine max 10104 10763 29-48XP_003525532 356513666 1 Glycine max 10105 10764 24-43 XP_003529500356521720 1 Glycine max 10106 10765 XP_003550723 356564979 0.959486166Glycine max 10107 10766 XP_002883053 297853636 0.707509881 Arabidopsislyrata 10108 subsp. lyrata NP_001118648 186510162 0.70256917 Arabidopsisthaliana 10109 10767 671-690 XP_003533338 356529518 1 Glycine max 1011010768 314-333 XP_003529470 356521656 1 Glycine max 10111 10769XP_003556768 356577305 0.95687885 Glycine max 10112 10770 Q430880.80698152 Ribulose-bisphosphate 10113 carboxylase 1MLV_A 0.747433265Pisum sativum 10114 2H21_A 0.743326489 Pisum sativum 10115 zma- 330-350ABE91847 61675805 1 Medicago truncatula 10116 10771 miR396b- 330-350ABE91847 61675805 1 Medicago truncatula 10117 10772 3p aly- 330-350ABE91847 61675805 1 Medicago truncatula 10118 10773 miR396a- 330-350ABE91847 61675805 1 Medicago truncatula 10119 10774 3p gma- 224-244NP_001235045 351725442 1 Glycine max 10120 10775 miR4412- XP_002274402225425717 0.733905579 Vitis vinifera 10121 10776 3p XP_002315800255761085 0.703862661 Populus trichocarpa 10122 1796-1816 NP_001235618351727227 1 Glycine max 10123 10777 gma- 177-198 AAX13306 60100357 1Lotus japonicus 10124 10778 miR482b- NP_001236130 351727233 0.959641256Glycine max 10125 10779 5p AAN15183 23194452 0.865470852 Gossypiumhirsutum 10126 10780 AAY30856 63094568 0.874439462 Prunus dulcis 1012710781 ABV60385 157674586 0.874439462 Carica papaya 10128 ABM69043122938394 0.860986547 Gossypium hirsutum 10129 10782 ADD91578 2912781930.878923767 Prunus serrulata 10130 10783 var. lannesiana AAO2010427763669 0.860986547 Momordica charantia 10131 10784 AAD01742 41033410.869955157 Cucumis sativus 10132 10785 ABQ85556 148535235 0.874439462Prunus persica 10133 10786 339-360 BAG06679 166788446 1 Phaseolusvulgaris 10134 10787 ACU20774 255640988 0.995575221 Glycine max 1013510788 ACU24523 255648136 0.977876106 Glycine max 10136 10789 AAM9102857472398 0.977876106 Pisum sativum 10137 10790 XP_002272971 2254620100.96460177 Vitis vinifera 10138 10791 ABW06389 157955930 0.938053097Gossypium hirsutum 10139 10792 ABW06392 157955936 0.933628319 Gossypiumhirsutum 10140 10793 ACJ86177 217075633 0.938053097 Medicago truncatula10141 10794 XP_002532178 255761086 0.951327434 Ricinus communis 10142ABW06390 157955932 0.938053097 Gossypium hirsutum 10143 10795 35-56CAN81115 147863854 1 Vitis vinifera 10144 10796 ptc- 753-772XP_002271271 225468315 1 Vitis vinifera 10145 10797 miRf11953-XP_002532424 255761086 0.945652174 Ricinus communis 10146 akr ACU20760255640960 0.945652174 Glycine max 10147 10798 XP_002877709 2978536360.940217391 Arabidopsis lyrata 10148 subsp. lyrata NP_001235421351721538 0.934782609 Glycine max 10149 10799 NP_001236131 3517272630.940217391 Glycine max 10150 10800 NP_190556 145339306 0.934782609Arabidopsis thaliana 10151 10801 ACU14878 255629066 0.940217391 Glycinemax 10152 10802 XP_002866698 297853636 0.923913043 Arabidopsis lyrata10153 subsp. lyrata NP_569051 186532841 0.918478261 Arabidopsis thaliana10154 10803 309-328 ACU18943 255637224 1 Glycine max 10155 10804ACU23146 255645298 0.953405018 Glycine max 10156 10805 ACJ84492217072263 0.810035842 Medicago truncatula 10157 10806 ABK94686 1184856710.784946237 Populus trichocarpa 10158 10807 XP_002528545 2557610860.76702509 Ricinus communis 10159 XP_002326541 255761085 0.741935484Populus trichocarpa 10160 XP_002278543 225427135 0.752688172 Vitisvinifera 10161 10808 XP_002274164 225454758 0.734767025 Vitis vinifera10162 10809 XP_002303431 255761085 0.749103943 Populus trichocarpa 10163218-237 ACU18943 255637224 1 Glycine max 10164 10810 1421-1440 P08926 1Pisum sativum 10165 BAE71311 84468455 0.957410562 Trifolium pratense10166 10811 BAE71231 84468295 0.955706985 Trifolium pratense 10167 10812BAE71302 84468437 0.954003407 Trifolium pratense 10168 10813 BAE7122784468287 0.93867121 Trifolium pratense 10169 10814 ACJ85785 2170748490.94548552 Medicago truncatula 10170 10815 AEO21430 3462291120.906303237 Glycine max 10171 10816 XP_002313525 255761085 0.877342419Populus trichocarpa 10172 AAC68501 3790440 0.889267462 Canavalia lineata10173 10817 XP_002328161 255761085 0.865417376 Populus trichocarpa 10174165-184 ACU23935 255646930 1 Glycine max 10175 10818 60-79 BAE7130484468441 1 Trifolium pratense 10176 10819 P08926 0.947939262 Pisumsativum 10177 bna- 163-183 ACU23935 255646930 1 Glycine max 10178 10820miR2111b- 1419-1439 P08926 1 Pisum sativum 10179 5p BAE71311 844684550.957410562 Trifolium pratense 10180 10821 BAE71231 84468295 0.955706985Trifolium pratense 10181 10822 BAE71302 84468437 0.954003407 Trifoliumpratense 10182 10823 BAE71227 84468287 0.93867121 Trifolium pratense10183 10824 ACJ85785 217074849 0.94548552 Medicago truncatula 1018410825 AEO21430 346229112 0.906303237 Glycine max 10185 10826XP_002313525 255761085 0.877342419 Populus trichocarpa 10186 AAC685013790440 0.889267462 Canavalia lineata 10187 10827 XP_002328161 2557610850.865417376 Populus trichocarpa 10188 153-173 ACU23159 255645324 1Glycine max 10189 10828 CAF04055 119391878 0.745098039 Nicotianabenthamiana 10190 10829 CAF25317 119391874 0.735294118 Capsicum annuum10191 10830 XP_002306360 255761085 0.715686275 Populus trichocarpa 10192XP_002279217 225438516 0.732026144 Vitis vinifera 10193 10831XP_002530256 255761086 0.715686275 Ricinus communis 10194 CBI22773270234152 0.722222222 Vitis vinifera 10195 CBI21530 2702320450.732026144 Vitis vinifera 10196 163-183 ACU23935 255646930 1 Glycinemax 10197 10832 58-78 BAE71304 84468441 1 Trifolium pratense 10198 10833P08926 0.947939262 Pisum sativum 10199 ptc- 720-743 ACU24381 255647842 1Glycine max 10200 10834 miRf11079- NP_001238255 351722074 0.996688742Glycine max 10201 10835 akr NP_001235901 351728022 0.943708609 Glycinemax 10202 10836 AAK84883 15148911 0.917218543 Phaseolus vulgaris 1020310837 AEE99077 332739375 0.870860927 Medicago truncatula 10204 10838XP_002529954 255761086 0.768211921 Ricinus communis 10205 XP_002310688255761085 0.771523179 Populus trichocarpa 10206 XP_002307195 2557610850.741721854 Populus trichocarpa 10207 69-92 AAK84883 15148911 1Phaseolus vulgaris 10208 10839 603-626 AAK84883 15148911 1 Phaseolusvulgaris 10209 10840 720-743 NP_001235901 351728022 1 Glycine max 1021010841 721-744 ACU24381 255647842 1 Glycine max 10211 10842 bra- 989-1009 XP_003530952 356524671 1 Glycine max 10212 10843 miR160a-XP_003525194 356512983 0.970842333 Glycine max 10213 10844 3pXP_003521511 356505464 0.904967603 Glycine max 10214 10845 XP_003592908357445260 0.792656587 Medicago truncatula 10215 10846 ABE91931 616758040.792656587 Medicago truncatula 10216 10847 XP_003626539 3575125000.795896328 Medicago truncatula 10217 10848 XP_002281426 2254415720.791576674 Vitis vinifera 10218 10849 Q9XHM1 0.789416847 Medicagotruncatula 10219 XP_003589347 357438142 0.782937365 Medicago truncatula10220 10850 CAN81874 147860525 0.761339093 Vitis vinifera 10221 10851gma- 328-349 XP_003521176 356504786 1 Glycine max 10222 10852 miR1507agma- 507-527 XP_003554498 356572687 1 Glycine max 10223 10853 miR1524XP_003521507 356505456 0.941358025 Glycine max 10224 10854 XP_003535834356534585 0.712962963 Glycine max 10225 10855 XP_003519022 3565004040.712962963 Glycine max 10226 10856 ppt- 189-209 XP_003553029 3565696881 Glycine max 10227 10857 miR166m XP_003537529 356538072 0.931216931Glycine max 10228 10858 XP_003601737 357462910 0.727513228 Medicagotruncatula 10229 10859 557-577 XP_002298892 255761085 1 Populustrichocarpa 10230 CAN73584 147820217 0.91943128 Vitis vinifera 10231XP_002332526 255761085 0.94549763 Populus trichocarpa 10232 XP_002281868225444032 0.91943128 Vitis vinifera 10233 10860 XP_003535078 3565330420.892180095 Glycine max 10234 10861 XP_003546255 356555874 0.893364929Glycine max 10235 10862 AAS66760 45479745 0.86492891 Nicotianasylvestris 10236 10863 XP_003532788 356528393 0.849526066 Glycine max10237 10864 XP_003524993 356512573 0.845971564 Glycine max 10238 10865ACI13683 206572100 0.816350711 Malus × domestica 10239 10866 515-535XP_003597690 357454818 1 Medicago truncatula 10240 10867 XP_003531652356526088 0.918660287 Glycine max 10241 10868 XP_003530109 3565229570.921052632 Glycine max 10242 10869 XP_002284003 225442500 0.897129187Vitis vinifera 10243 10870 CBI36079 270253379 0.897129187 Vitis vinifera10244 XP_002515977 255761086 0.901913876 Ricinus communis 10245XP_003530112 356522963 0.916267943 Glycine max 10246 10871 XP_002284014225442502 0.897129187 Vitis vinifera 10247 10872 ACI13685 2065721040.89354067 Malus × domestica 10248 10873 XP_002304217 2557610850.888755981 Populus trichocarpa 10249 560-580 XP_002285176 225435326 1Vitis vinifera 10250 10874 CAN61612 147783603 0.981042654 Vitis vinifera10251 XP_002529946 255761086 0.918246445 Ricinus communis 10252XP_003538150 356539326 0.892180095 Glycine max 10253 10875 XP_003539764356542618 0.895734597 Glycine max 10254 10876 ACI13684 2065721020.888625592 Malus × domestica 10255 10877 XP_003539765 3565426200.890995261 Glycine max 10256 10878 AAX19050 60327620 0.881516588Populus trichocarpa 10257 10879 DAA05766 109729904 0.853080569 Lotusjaponicus 10258 AAY33856 63115353 0.8507109 Gossypium barbadense 1025910880 554-574 XP_003603630 357466690 1 Medicago truncatula 10260 10881XP_003522716 356507930 0.943645084 Glycine max 10261 10882 XP_003526496356515618 0.940047962 Glycine max 10262 10883 ACI13686 2065721060.872901679 Malus × domestica 10263 10884 ADL36609 302398628 0.863309353Malus × domestica 10264 10885 CBI20838 270231236 0.862110312 Vitisvinifera 10265 XP_002283717 225429913 0.862110312 Vitis vinifera 1026610886 ACL51017 219879369 0.858513189 Citrus trifoliata 10267 10887XP_002309538 255761085 0.868105516 Populus trichocarpa 10268XP_002324794 255761085 0.857314149 Populus trichocarpa 10269 40-60AAS10176 41745611 1 Antirrhinum majus 10270 10888 554-574 XP_003530109356522957 1 Glycine max 10271 10889 XP_003531653 356526090 0.95823389Glycine max 10272 10890 XP_003627005 357513432 0.91646778 Medicagotruncatula 10273 10891 XP_003597690 357454818 0.918854415 Medicagotruncatula 10274 10892 590-610 XP_003524993 356512573 1 Glycine max10275 10893 XP_002298892 255761085 0.832356389 Populus trichocarpa 10276XP_003594520 357448488 0.781946073 Medicago truncatula 10277 10894 25-45XP_003522716 356507930 1 Glycine max 10278 10895 XP_003603630 3574666900.932464455 Medicago truncatula 10279 10896 560-580 XP_003530112356522963 1 Glycine max 10280 10897 572-592 P00965 1 Phaseolus vulgaris10281 XP_003544980 356553268 0.935393258 Glycine max 10282 10898XP_003519325 356501016 0.935393258 Glycine max 10283 10899 ACU19484255638343 0.926966292 Glycine max 10284 10900 XP_003519326 3565010180.935393258 Glycine max 10285 10901 AAB61597 2213876 0.901685393 Heveabrasiliensis 10286 10902 P32289 0.901685393 Vigna aconitifolia 10287ABW89460 159138920 0.904494382 Gossypium herbaceum 10288 10903 P047700.896067416 Phaseolus vulgaris 10289 ABW89461 159138922 0.901685393Gossypium hirsutum 10290 10904  87-107 CAN73584 147820217 1 Vitisvinifera 10291 530-550 XP_003532788 356528393 1 Glycine max 10292 10905516-536 XP_003537529 356538072 1 Glycine max 10293 10906 566-586XP_003531653 356526090 1 Glycine max 10294 10907 560-580 XP_003539764356542618 1 Glycine max 10295 10908 XP_002285176 225435326 0.894674556Vitis vinifera 10296 10909 CAC84906 18076735 0.829585799 Zinnia violacea10297 10910 828-848 XP_003539765 356542620 1 Glycine max 10298 10911ptc- 557-577 XP_002298892 255761085 1 Populus trichocarpa 10299 miR166pCAN73584 147820217 0.91943128 Vitis vinifera 10300 XP_002332526255761085 0.94549763 Populus trichocarpa 10301 XP_002281868 2254440320.91943128 Vitis vinifera 10302 10912 XP_003535078 356533042 0.892180095Glycine max 10303 10913 XP_003546255 356555874 0.893364929 Glycine max10304 10914 AAS66760 45479745 0.86492891 Nicotiana sylvestris 1030510915 XP_003532788 356528393 0.849526066 Glycine max 10306 10916XP_003524993 356512573 0.845971564 Glycine max 10307 10917 ACI13683206572100 0.816350711 Malus × domestica 10308 10918 515-535 XP_003597690357454818 1 Medicago truncatula 10309 10919 XP_003531652 3565260880.918660287 Glycine max 10310 10920 XP_003530109 356522957 0.921052632Glycine max 10311 10921 XP_002284003 225442500 0.897129187 Vitisvinifera 10312 10922 CBI36079 270253379 0.897129187 Vitis vinifera 10313XP_002515977 255761086 0.901913876 Ricinus communis 10314 XP_003530112356522963 0.916267943 Glycine max 10315 10923 XP_002284014 2254425020.897129187 Vitis vinifera 10316 10924 ACI13685 206572104 0.89354067Malus × domestica 10317 10925 XP_002304217 255761085 0.888755981 Populustrichocarpa 10318 560-580 XP_002285176 225435326 1 Vitis vinifera 1031910926 CAN61612 147783603 0.981042654 Vitis vinifera 10320 XP_002529946255761086 0.918246445 Ricinus communis 10321 XP_003538150 3565393260.892180095 Glycine max 10322 10927 XP_003539764 356542618 0.895734597Glycine max 10323 10928 ACI13684 206572102 0.888625592 Malus × domestica10324 10929 XP_003539765 356542620 0.890995261 Glycine max 10325 10930AAX19050 60327620 0.881516588 Populus trichocarpa 10326 10931 DAA05766109729904 0.853080569 Lotus japonicus 10327 AAY33856 63115353 0.8507109Gossypium barbadense 10328 10932 554-574 XP_003603630 357466690 1Medicago truncatula 10329 10933 XP_003522716 356507930 0.943645084Glycine max 10330 10934 XP_003526496 356515618 0.940047962 Glycine max10331 10935 ACI13686 206572106 0.872901679 Malus × domestica 10332 10936ADL36609 302398628 0.863309353 Malus × domestica 10333 10937 CBI20838270231236 0.862110312 Vitis vinifera 10334 XP_002283717 2254299130.862110312 Vitis vinifera 10335 10938 ACL51017 219879369 0.858513189Citrus trifoliata 10336 10939 XP_002309538 255761085 0.868105516 Populustrichocarpa 10337 XP_002324794 255761085 0.857314149 Populus trichocarpa10338 40-60 AAS10176 41745611 1 Antirrhinum majus 10339 10940 554-574XP_003530109 356522957 1 Glycine max 10340 10941 XP_003531653 3565260900.95823389 Glycine max 10341 10942 XP_003627005 357513432 0.91646778Medicago truncatula 10342 10943 XP_003597690 357454818 0.918854415Medicago truncatula 10343 10944 590-610 XP_003524993 356512573 1 Glycinemax 10344 10945 XP_003594520 357448488 0.781946073 Medicago truncatula10345 10946 25-45 XP_003522716 356507930 1 Glycine max 10346 10947XP_003603630 357466690 0.932464455 Medicago truncatula 10347 10948560-580 XP_003530112 356522963 1 Glycine max 10348 10949 530-550XP_003532788 356528393 1 Glycine max 10349 10950  87-107 CAN73584147820217 1 Vitis vinifera 10350 113-133 XP_003516553 356495373 1Glycine max 10351 10951 XP_003537620 356538255 0.909756098 Glycine max10352 10952 566-586 XP_003531653 356526090 1 Glycine max 10353 10953560-580 XP_003539764 356542618 1 Glycine max 10354 10954 XP_002285176225435326 0.894674556 Vitis vinifera 10355 10955 CAC84906 180767350.829585799 Zinnia violacea 10356 10956 828-848 XP_003539765 356542620 1Glycine max 10357 10957 ptc- 368-388 XP_003550796 356565126 1 Glycinemax 10358 10958 miRf10007- XP_003528595 356519875 0.931982634 Glycinemax 10359 10959 akr XP_003609844 357479116 0.714905933 Medicagotruncatula 10360 10960 ptc- 600-621 XP_003520116 356502619 1 Glycine max10361 10961 miRf11396- XP_002280702 225438602 0.856050955 Vitis vinifera10362 10962 akr EAZ28751 54398660 0.829299363 Oryza sativa 10363Japonica Group ptc-  88-108 NP_001236364 351726593 1 Glycine max 1036410963 miRf12069- akr

Example 4 Verification of Expression of miRNA Molecules Associated withAbiotic Stress

Following identification of small RNA molecules potentially involved inimprovement of soybean abiotic stress tolerance and their target genes(mRNAs) using bioinformatics tools, as described in Example 4 above, theactual mRNA levels in an experiment are determined using reversetranscription assay followed by quantitative Real-Time PCR (qRT-PCR)analysis. RNA levels are compared between different tissues,developmental stages, growing conditions and/or genetic backgroundsincorporated in each experiment. A correlation analysis between mRNAlevels in different experimental conditions/genetic backgrounds isapplied and used as evidence for the role of the gene in the plant.

Methods

Root and leaf samples are freshly excised from soybean plants grown asdescribed above on Murashige-Skoog (Duchefa). Experimental plants aregrown either under optimal irrigation conditions, salt levels ortemperatures to be used as a control group, or under stressfulconditions of prolonged water deprivation, high salt concentrations anda heat shock treatment at a temperature higher than 34° C. to be used asstress-induced groups to assess the drought, salinity and heat shocktolerance, respectively, of control versus transgenic plants. Total RNAis extracted from the different tissues, using mirVana™ commercial kit(Ambion) following the protocol provided by the manufacturer. Formeasurement and verification of messenger RNA (mRNA) expression level ofall genes, reverse transcription followed by quantitative real time PCR(qRT-PCR) is performed on total RNA extracted from each plant tissue(i.e., roots and leaves) from each experimental group as describedabove. To elaborate, reverse transcription is performed on 1 μg totalRNA, using a miScript Reverse Transcriptase kit (Qiagen), following theprotocol suggested by the manufacturer. Quantitative RT-PCR is performedon cDNA (0.1 ng/μl final concentration), using a miScript SYBR GREEN PCR(Qiagen) forward (based on the miR sequence itself) and reverse primers(supplied with the kit). All qRT-PCR reactions are performed intriplicates using an ABI7500 real-time PCR machine, following therecommended protocol for the machine. To normalize the expression levelof miRNAs associated with enhanced abiotic stress tolerance between thedifferent tissues and growing conditions of the soybean plants,normalizer miRNAs are selected and used for comparison. NormalizermiRNAs, which are miRNAs with unchanged expression level between tissuesand growing conditions, are custom selected for each experiment. Thenormalization procedure consists of second-degree polynomial fitting toa reference data (which is the median vector of all the data-excludingoutliers) as described by Rosenfeld et al (2008, Nat Biotechnol,26(4):462-469). A summary of primers for the differential small RNAmolecules that will be used in the qRT-PCR validation and analysis ispresented in Table 11a below.

TABLE 11a Primers of Differential miRNA Molecules for qRT-PCR ValidationStep. Primer Mir Name Primer Sequence Length Tm ahy-miR3514-5pTGGCAGGATTCTGTATTAACGGTGGA/10964 26 59.6 aly-miR160c-3pGCGTACAAGGAGCCAAGCATG/10965 21 58.5 aly-miR396a-3pGGCGTTCAATAAAGCTGTGGGAAG/10966 24 58.7 aly-miR396b-3pGCGCTCAAGAAAGCTGTGGGAAA/10967 23 60.3 aly-miR831-5pGGCAGAAGAGGTACAAGGAGATGAGA/10968 26 59.2 aqc-miR159GGCTTTGGACTGAAGGGAGCTCTA/10969 24 59.8 ath-miR157aTTTGGCTTGACAGAAGATAGAGAGCAC/10970 27 58.8 ath-miR159bGGCTTTGGATTGAAGGGAGCTCTT/10971 24 59.0 ath-miR159cGCTTTGGATTGAAGGGAGCTCCT/10972 23 58.7 ath-miRf10068-akrCACCGGTGGAGGAGTGAGAG/10973 20 58.0 ath-miRf10148-akrGGCGGTGGTGGAAAGATCAAGAT/10974 23 59.1 ath-miRf10197-akrCACTCGACCAAGGGGGTCGAGTGA/10975 24 63.6 ath-miRf10209-akrATGGTGGTACTCGGCCAGGTGGT/10976 23 63.5 ath-miRf10239-akrGCCGCCTTGCATCAACTGAATC/10977 22 59.2 ath-miRf10240-akrGCATCGAAGGAGATGGAGGACG/10978 22 59.0 ath-miRf10279-akrACTCAGCCTGGGGGTCGAG/10979 19 59.7 ath-miRf10368-akrGGCACTTGGGTGGTGCTGATTAT/10980 23 59.3 ath-miRf10451-akrGGCAAGAAGGAGGAACAACCTGTTG/10981 25 60.0 ath-miRf10633-akrTGGCGGTGGATACTTCTTGATCGG/10982 24 60.5 ath-miRf10687-akrGGCTTAGCTGAAGAAGCAGAGGAG/10983 24 58.9 ath-miRf10701-akrTGCAGTTCCTGGAGGTGGAGG/10984 21 60.0 ath-miRf10702-akrCGTGGGAGGACTCCAAGTGTG/10985 21 58.9 ath-miRf10751-akrGCCTTGTGGAGAGGAAGCAAGA/10986 22 58.6 ath-miRf10763-akrGCGGTGGTGAAGAAGCATGGTT/10987 22 60.1 ath-miRf10924-akrGCTGAGGCGTATCAGGAGGTAGT/10988 23 59.4 ath-miRf11021-akrGGCGAGGTTTGCGATGAGAAAGAG/10989 24 60.2 ath-miRf11037-akrGCTCATCGGAGAAACAGAGGAGC/10990 23 59.2 ath-miRf11042-akrGGAAGAGGCAGTGCATGGGTA/10991 21 58.3 ath-miRf11045-akrGGCTTTCTTGTGGAGGAAGCAAGAT/10992 25 59.3 bdi-miR2508GCATTGAGTGCAGCGTTGATGAAC/10993 24 59.7 bna-miR2111b-5pCATTTGGCTAATCTGCATCCTGAGGTTTA/10994 29 59.1 bra-miR160a-3pCGCGTATGAGGAGCCATGCATA/10995 22 59.0 csi-miR162-5pTGGAGGCAGCGGTTCATCGATC/10996 22 61.1 csi-miR3946GGCTTGTAGAGAAAGAGAAGAGAGCAC/10997 27 58.8 csi-miR3948TGGAGTGGGAGTGGGAGTAGGGTG/10998 24 62.6 ctr-miR171GCTTGAGCCGCGTCAATATCTCC/10999 23 60.1 far-miR1134GCCGACAACAACAACAAGAAGAAGAG/11000 26 58.9 ghr-miR2950TGGTGTGCAGGGGGTGGAATA/11001 21 59.6 gma-miR1507aTGGCTCTCATTCCATACATCGTCTGA/11002 26 59.2 gma-miR1524CGAGTCCGAGGAAGGAACTCC/11003 21 58.2 gma-miR156gTTTGGCACAGAAGATAGAGAGCACAG/11004 26 58.7 gma-miR157cTGGCTGACAGAAGACTAGAGAGCAC/11005 25 59.6 gma-miR159a-3pTGGCTTTGGATTGAAGGGAGCTCTA/11006 25 59.5 gma-miR159dGCAGCTGCTTAGCTATGGATCCC/11007 23 59.3 gma-miR2119GGCTCAAAGGGAGTTGTAGGGGAA/11008 24 60.0 gma-miR396dGCAAGAAAGCTGTGGGAGAATATGGC/11009 26 60.2 gma-miR4371bAAGTGATGACGTGGTAGACGGAGT/11010 24 59.3 gma-miR4376-5pTACGCAGGAGAGATGACGCTGT/11011 22 59.6 gma-miR4412-3pAGTGGCGTAGATCCCCACAAC/11012 21 58.4 gma-miR4416aACGGGTCGCTCTCACCTAGG/11013 20 59.5 gma-miR482a-3pTCTTCCCAATTCCGCCCATTCCTA/11014 24 59.6 gma-miR482b-5pGCTATGGGGGGATTGGGAAGGAAT/11015 24 59.9 gso-miR169g*TCGGCAAGTTGGCCTTGGCT/11016 20 61.5 gso-miR482aGGCTCTTCCCTACACCTCCCATAC/11017 24 59.7 iba-miR157CATTTGGCTTGACAGAAGATAGAGAGCAT/11018 29 58.9 mdm-miR482a-5pCGGAATGGGCTGTTTGGGAACA/11019 22 59.7 mtr-miR2119GCTCAAAGGGAGGTGTGGAGTAG/11020 23 58.5 osa-miR159eGCATTGGATTGAAGGGAGCTCCT/11021 23 58.8 osa-miR159fGGCCTTGGATTGAAGGGAGCTCTA/11022 24 59.9 osa-miR162aGGCTCGATAAACCTCTGCATCCAG/11023 24 59.3 osa-miR1846eCAACGAGGAGGCCGGGACCA/11024 20 62.8 osa-miR1850.1GCTGGAAAGTTGGGAGATTGGGG/11025 23 59.6 osa-miR1858aGAGAGGAGGACGGAGTGGGGC/11026 21 62.2 osa-miR1869GCTGAGAACAATAGGCATGGGAGGTA/11027 26 60.0 osa-miR1874-3pGCTATGGATGGAGGTGTAACCCGATG/11028 26 60.6 osa-miR1879CGTGTTTGGTTTAGGGATGAGGTGG/11029 25 59.6 osa-miR1881GCAATGTTATTGTAGCGTGGTGGTGT/11030 26 60.1 osa-miR2055GGCTTTCCTTGGGAAGGTGGTTTC/11031 24 60.0 osa-miR2104GCGGCGAGGGGATGCGAGCG/11032 20 67.4 osa-miRf10105-akrTTGGCCTCGTCGAAGAAGGAGA/11033 22 59.5 osa-miRf10151-akrGGCTGGCTATATTTTGGGACGGAG/11034 24 59.3 osa-miRf10362-akrGCTGGAGGATGCGACGGTGCT/11035 21 63.6 osa-miRf10839-akrCCCTGTGACGTTGGTGAAGGTG/11036 22 59.7 osa-miRf10849-akrTGGACTGTTTGGGGGAGCTTCT/11037 22 59.6 osa-miRf11013-akrGGTTTGCCGGAGTTGGAGGAGA/11038 22 60.6 osa-miRf11341-akrCGCGCCGACGATGACGGTGGAGT/11039 23 67.4 osa-miRf11352-akrGCAGGGATTTTGGAAGGAGGTGACA/11040 25 60.8 osa-miRf11355-akrGGTGGAGGTGGAGCTGTGCCAAA/11041 23 63.2 osa-miRf11415-akrGAGAGCAGGATGCAGCCAAGG/11042 21 59.6 osa-miRf11595-akrCCATCGGTGTTGGAGGTGGC/11043 20 59.8 osa-miRf11649-akrAAACCGTGCAAAGGAGGTCCC/11044 21 59.4 osa-miRf11829-akrACGCGGAGGAGGTGGTGTTCT/11045 21 62.0 osa-miRf11996-akrGCGTCTTATAACCTGAAACGGGGG/11046 24 59.5 pab-miR3711TGGCGCTAGAAGGAGGGCCT/11047 20 61.6 ppt-miR1220aGCTTCCGGTGGTGAGGAAGATAG/11048 23 58.6 ppt-miR166mGCTCGGACCAGGCATCATTCCTT/11049 23 61.0 ppt-miR533b-5pGAGCTGTCCAGGCTGTGAGGG/11050 21 61.0 ppt-miR895GCGTAGCTTAGCGAGGTGTTGGTA/11051 24 60.7 psi-miR159GCCTTGGATTGAAGGGAGCTCCA/11052 23 60.6 pta-miR156aTTTGGCCAGAAGATAGAGAGCACATC/11053 26 58.5 pta-miR156bTTGGCCAGAAGATAGAGAGCACAAC/11054 25 58.6 pta-miR166cCCGGACCAGGCTTCATCCCAG/11055 21 61.1 ptc-miR166pTCGGACCAGGCTCCATTCCTT/11056 21 59.4 ptc-miRf10007-akrGCCATTGACAGGGAAACTCACCA/11057 23 59.2 ptc-miRf10132-akrTTGGCGGTGATTGAACGGAGGGT/11058 23 62.7 ptc-miRf10148-akrTGGTGCACCTGGTGGTGGAG/11059 20 60.8 ptc-miRf10226-akrTCCTTTGGGGAGATGGAGAGCTT/11060 23 58.9 ptc-miRf10271-akrTGGCTTGGATTGAAGGGAGCTCTAA/11061 25 59.5 ptc-miRf10300-akrGGCTTTGGAAAGCAAGTGAGGTG/11062 23 58.7 ptc-miRf10522-akrTTGGGGAGCTGGACTCTGGA/11063 20 58.6 ptc-miRf10619-akrGTTGGGCTTGCTGCTGGAGGA/11064 21 61.5 ptc-miRf10734-akrGCCATCTAGGTGGTGGTCCAGTG/11065 23 60.7 ptc-miRf10976-akrTGGGAACGTGGCTGTGGCTA/11066 20 60.3 ptc-miRf10985-akrTGGCCAGAAGATAGAGAGCACTGA/11067 24 58.8 ptc-miRf11018-akrCCTGCAAACCTAAGGGAGCGG/11068 21 59.6 ptc-miRf11079-akrAAGATGGAGAAGCAGGGCACGTGC/11069 24 63.4 ptc-miRf11315-akrGCCAACTTAGAGTTGGGGGTGG/11070 22 59.2 ptc-miRf11324-akrCTTGTCGCAGGAGAGATGGCGCT/11071 23 63.1 ptc-miRf11396-akrGCCAAGGCTCTGATACCATGTCAA/11072 24 58.9 ptc-miRf11669-akrGGCCAAGGCTCTGATACCATGTT/11073 23 58.8 ptc-miRf11757-akrCCTTGGTGAATGGTTGGGAGGAAT/11074 24 58.7 ptc-miRf11844-akrCCCAACTTGGAGGTGGGTGTGG/11075 22 61.4 ptc-miRf11847-akrGCGAAAGTGTGGAGAAGGTTGCC/11076 23 60.6 ptc-miRf11855-akrGGCAGAGCATGGATGGAGCTA/11077 21 58.2 ptc-miRf11953-akrGGCGTAATCTGCATCCTGAGGTT/11078 23 58.9 ptc-miRf12069-akrGGAGGGGCTGCAAGACCCAAG/11079 21 61.5 ptc-miRf12389-akrGTCGACCTGGCGAGTCAACCGGG/11080 23 65.3 sbi-miR159aGGCTTTGGATTGAAGGGAGCTCTG/11081 24 59.6 smo-miR1103-3pGCTGGAAAAAGGAGGTGCATTCTTGT/11082 26 60.0 smo-miR156bTGGCCTGACAGAAGATAGAGAGCAC/11083 25 59.7 tae-miR2003CGGTTGGGCTGTATGATGGCGA/11084 22 61.3 vvi-miR2111-5pTGGCTAATCTGCATCCTGAGGTCTA/11085 25 58.7 vvi-miR394bGCTTGGCATTCTGTCCACCTCC/11086 22 59.9 zma-miR167uGGCTGAAGCTGCCACATGATCTG/11087 23 60.2 zma-miR396b-3pGGCTTCCACAGCTTTCTTGAACTG/11088 24 58.5 zma-miR398a-5pTGTGTTCTCAGGTCGCCCCCG/11089 21 62.9 zma-miR482-5pTGGCTCTTCCTTGTTCCTCCCATT/11090 24 59.7Alternative RT-PCR Validation Method of Selected microRNAs of theInvention

A novel microRNA quantification method has been applied using stem-loopRT followed by PCR analysis (Chen C, Ridzon D A, Broomer A J, Zhou Z,Lee D H, Nguyen JT, Barbisin M, Xu N L, Mahuvakar V R, Andersen M R, LaoK Q, Livak K J, Guegler K J. 2005, Nucleic Acids Res 33(20):e179;Varkonyi-Gasic E, Wu R, Wood M, Walton E F, Hellens R P. 2007, PlantMethods 3:12). This highly accurate method allows the detection of lessabundant miRNAs. In this method, stem-loop RT primers are used, whichprovide higher specificity and efficiency to the reverse transcriptionprocess. While the conventional method relies on polyadenylated (poly(A)) tail and thus becomes sensitive to methylation because of thesusceptibility of the enzymes involved, in this novel method the reversetranscription step is transcript-specific and insensitive tomethylation. Reverse transcriptase reactions contained RNA samplesincluding purified total RNA, 50 nM stem-loop RT primer (50-51nucleotide long, see Table 11b, synthesized by Sigma), and using theSuperScript II reverse transcriptase (Invitrogen). A mix of up to 12stem-loop RT primers may be used in each reaction, and the forwardprimers are such that the last 6 nucleotides are replaced with a GC richsequence. For the PCR step, each miRNA has a custom forward primer(18-24 nucleotide long) and a universal stem loop reverse primer(5′-GTGCAGGGTCCGAGGT-3′-SEQ ID NO: 11617). Table 11b below lists theprimers used for PCR validation using this method. Note, SL-RT standsfor stem loop reverse transcription primer, and SL-F stands for stemloop forward primer.

TABLE 11bStem Loop Reverse Transcriptase Primers for RT-PCR Validation ofDifferential Mirs under Abiotic Stress. Forward Primer Mir NameStem Loop Primer Forward Primer Length ahy-miR3514-5pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGAGGATTCTGTAT 22GCACTGGATACGACTCCACC/11618 TAAC/11619 aly-miR396a-3pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGGTTCAATAAAG 21GCACTGGATACGACCTTCCC/11620 CTGT/11621 aly-miR396b-3pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGGCTCAAGAAAG 21GCACTGGATACGACTTTCCC/11622 CTGT/11623 aly-miR831-5pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGAGAAGAGGTAC 23GCACTGGATACGACTCTCAT/11624 AAGGAG/11625 ath-miRf10197-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGCTCACTCGACCAAGG 21 akrGCACTGGATACGACTCACTCG/11626 GGGT/11627 ath-miRf10279-GTCGTATCCAGTGCAGGGTCCGAGGTATTC TTCCACTCAGCCTGGGGG 21 akrGCACTGGATACGACATCACT/11628 TCG/11629 ath-miRf10687-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTAGCTGAAGA 21 akrGCACTGGATACGACCTCCTC/11630 AGCA/11631 gma-miRf10687-GTCGTATCCAGTGCAGGGTCCGAGGTATTC GAGCTTAGCCGCAGAGG 19 akr-homologGCACTGGATACGACCTCCTC/11632 CA/11633 ath-miRf11021-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGAGGTTTGCGATG 19 akrGCACTGGATACGACCTCTTT/11634 AG/11635 ath-miRf11045-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTTCTTGTGGAG 22 akrGCACTGGATACGACATCTTG/11636 GAAG/11637 csi-miR162-5pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGTCTGGAGGCAGCGGTT 20GCACTGGATACGACGATCGA/11638 CA/11639 far-miR1134GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGCGCCGACAACAACAA 23GCACTGGATACGACCTCTTC/11640 CAAGAA/11641 gma-miR159dGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGAGCTGCTTAGCT 21GCACTGGATACGACGGGATC/11642 ATG/11643 gma-miR396dGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGCGCAAGAAAGCTGTG 23GCACTGGATACGACGCCATA/11644 GGAGAA/11645 gma-miR4376-5pGTCGTATCCAGTGCAGGGTCCGAGGTATTC GGCCGGTACGCAGGAGA 22GCACTGGATACGACACAGCG/11646 GATGA/11647 gma-miR4412-3pGTCGTATCCAGTGCAGGGTCCGAGGTATTC TTCCAGTGGCGTAGATCC 19GCACTGGATACGACGTTGTG/11648 C/11649 gma-miR4416aGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCACGGGTCGCTCTCA/ 18GCACTGGATACGACCCTAGG/11650 11651 gma-miR482a-3pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGTCTCTTCCCAATTCCG 22GCACTGGATACGACTAGGAA/11652 CCCA/11653 gso-miR169g*GTCGTATCCAGTGCAGGGTCCGAGGTATTC GTTACTCGGCAAGTTGGC/ 18GCACTGGATACGACAGCCAAG/11654 11655 mtr-miR2119GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTCAAAGGGAGG 21GCACTGGATACGACCTACTC/11656 TGTG/11657 osa-miR1874-3pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTATGGATGGAG 24GCACTGGATACGACCATCGG/11658 GTGTAAC/11659 osa-miRf10105-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CCGGTTGGCCTCGTCGAA 20 akrGCACTGGATACGACTCTCCT/11660 GA/11661 osa-miRf10151-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTGGCTATATTTT 21 akrGCACTGGATACGACCTCCGT/11662 GGG/11663 osa-miRf10362-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGATGCTGGAGGATGCG 19 akrGCACTGGATACGACAGCACC/11664 AC/11665 osa-miRf10839-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCCCTGTGACGTTGGT 19 akrGCACTGGATACGACCACCTT/11666 G/11667 osa-miRf11649-GTCGTATCCAGTGCAGGGTCCGAGGTATTC GCGCAAACCGTGCAAAG 19 akrGCACTGGATACGACGGGACC/11668 GA/11669 pab-miR3711GTCGTATCCAGTGCAGGGTCCGAGGTATTC GGCCCTGGCGCTAGAAG 19GCACTGGATACGACAGGCCC/11670 GA/11671 ppt-miR533b-5pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGAGCTGTCCAGGCT 19GCACTGGATACGACCCCTCA/11672 G/11673 ppt-miR895GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGGTAGCTTAGCG 22GCACTGGATACGACTACCAA/11674 AGGTG/11675 ptc-miRf10300-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTTGGAAAGCA 20 akrGCACTGGATACGACCACCTC/11676 AGT/11677 ptc-miRf10522-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGCGCTTGGGGAGCTGG 19 akrGCACTGGATACGACTCCAGA/11678 AC/11679 ptc-miRf10619-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGTTGGGCTTGCTGC 19 akrGCACTGGATACGACTCCTCC/11680 T/11681 ptc-miRf11855-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGCAGAGCATGGA 19 akrGCACTGGATACGACTAGCTC/11682 TG/11683 ptc-miRf12069-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGTCGGAGGGGCTGCAA 19 akrGCACTGGATACGACCTTGGG/11684 GA/11685 smo-miR1103-3pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCTGGAAAAAGGAGG 22GCACTGGATACGACACAAGA/11686 TGCAT/11687 zma-miR396b-3pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGGTTCAATAAAG 21GCACTGGATACGACTTTCCC/11688 CTGT/11689 zma-miR482-5pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTGGGAGATGAA 19GCACTGGATACGACAAGGCT/11690 GG/11691 aly-miR160c-3pGTCGTATCCAGTGCAGGGTCCGAGGTATTC GAATCGCGTACAAGGAG 20GCACTGGATACGACCATGCT/11692 CCA/11693 aqc-miR159GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTTGGACTGAA 21GCACTGGATACGACTAGAGC/11694 GGGA/11695 ath-miR157aGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTGACAGAAGA 21GCACTGGATACGACGTGCTC/11696 TAGA/11697 ath-miR159bGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTTGGATTGAAG 21GCACTGGATACGACAAGAGC/11698 GGA/11699 ath-miR159cGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTTGGATTGAAG 21GCACTGGATACGACAGGAGC/11700 GGA/11701 ath-miRf10068-GTCGTATCCAGTGCAGGGTCCGAGGTATTC GGCCCACCGGTGGAGGA 18 akrGCACTGGATACGACCTCTCA/11702 G/11703 ath-miRf10148-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGGGTGGTGGAAA 20 akrGCACTGGATACGACATCTTG/11704 GAT/11705 ath-miRf10209-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGTCATGGTGGTACTCGG 21 akrGCACTGGATACGACACCACC/11706 CCA/11707 ath-miRf10239-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCCGCCTTGCATCAAC/ 18 akrGCACTGGATACGACGATTCA/11708 11709 ath-miRf10240-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGATCGAAGGAGA 20 akrGCACTGGATACGACCGTCCT/11710 TGG/11711 ath-miRf10368-GTCGTATCCAGTGCAGGGTCCGAGGTATTC AAGGCCTACTTGGGTGGT 21 akrGCACTGGATACGACATAATC/11712 GCT/11713 ath-miRf10451-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGAAGAAGGAGGA 22 akrGCACTGGATACGACCAACAG/11714 ACAAC/11715 ath-miRf10633-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCTGGCGGTGGATACT 22 akrGCACTGGATACGACCCGATC/11716 TCTT/11717 ath-miRf10701-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGCGCTGCAGTTCCTGGA 21 akrGCACTGGATACGACTCCTCC/11718 GGT/11719 ath-miRf10702-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGTGGGAGGACTCC 18 akrGCACTGGATACGACCACACT/11720 A/11721 ath-miRf10751-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGCTTGTGGAGAG 20 akrGCACTGGATACGACTCTTGC/11722 GAA/11723 ath-miRf10763-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGCGCGGTGGTGAAGAA 19 akrGCACTGGATACGACAACCAT/11724 GC/11725 ath-miRf10924-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGTAGGTGAGGCGTATC 21 akrGCACTGGATACGACACTACC/11726 AGGA/11727 ath-miRf11037-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTCATCGGAGAA 21 akrGCACTGGATACGACGCTCCT/11728 ACAG/11729 ath-miRf11042-GTCGTATCCAGTGCAGGGTCCGAGGTATTC AATCCTGGAAGAGGCAG 20 akrGCACTGGATACGACTACCCAT/11730 TGC/11731 bdi-miR2508GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCATTGAGTGCAGCGT 20GCACTGGATACGACGTTCAT/11732 TG/11733 bna-miR2111b-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTAATCTGCATCC 21 5pGCACTGGATACGACTAAACC/11734 TGA/11735 bra-miR160a-3pGTCGTATCCAGTGCAGGGTCCGAGGTATTC GAATCGCGTATGAGGAG 20GCACTGGATACGACTATGCA/11736 CCA/11737 csi-miR3946GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTGTAGAGAAA 24GCACTGGATACGACGTGCTC/11738 GAGAAGA/11739 csi-miR3948GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCTGGAGTGGGAGTG 22GCACTGGATACGACCACCCT/11740 GGAGT/11741 ctr-miR171GTCGTATCCAGTGCAGGGTCCGAGGTATTC AATCCTTTGAGCCGCGTC 21GCACTGGATACGACGGAGAT/11742 AAT/11743 ghr-miR2950GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGTCTGGTGTGCAGGGG 19GCACTGGATACGACTATTCC/11744 GT/11745 gma-miR1507aGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTCTCATTCCATA 22GCACTGGATACGACTCAGAC/11746 CATC/11747 gma-miR1524GTCGTATCCAGTGCAGGGTCCGAGGTATTC GCGCCGAGTCCGAGGAA 19GCACTGGATACGACGGAGTT/11748 GG/11749 gma-miR156gGTCGTATCCAGTGCAGGGTCCGAGGTATTC GCGGCGGACAGAAGATA 21GCACTGGATACGACCTGTGC/11750 GAGA/11751 gma-miR157cGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTGACAGAAGAC 21GCACTGGATACGACGTGCTC/11752 TAGA/11753 gma-miR159a-3pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTTGGATTGAAG 21GCACTGGATACGACTAGAGC/11754 GGA/11755 gma-miR2119GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTCAAAGGGAGT 21GCACTGGATACGACTTCCCC/11756 TGTA/11757 gma-miR4371bGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGAAGTGATGACG 24GCACTGGATACGACACTCCG/11758 TGGTAGA/11759 gma-miR482b-5pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCTATGGGGGGATTG 20GCACTGGATACGACATTCCT/11760 GGA/11761 gso-miR482aGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTCTTCCCTACAC 21GCACTGGATACGACGTATGG/11762 CTC/11763 iba-miR157GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTGACAGAAGA 21GCACTGGATACGACATGCTC/11764 TAGA/11765 mdm-miR482a-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGAATGGGCTGTTT 19 5pGCACTGGATACGACTGTTCC/11766 G/11767 osa-miR159eGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGATTGGATTGAA 21GCACTGGATACGACAGGAGC/11768 GGGA/11769 osa-miR159fGTCGTATCCAGTGCAGGGTCCGAGGTATTC AAGGCCTCTTGGATTGAA 22GCACTGGATACGACTAGAGC/11770 GGGA/11771 osa-miR162aGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTCGATAAACCTC 21GCACTGGATACGACCTGGAT/11772 TGC/11773 osa-miR1846eGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGTCCAACGAGGAGGCC 18GCACTGGATACGACTGGTCC/11774 G/11775 osa-miR1850.1GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTGGAAAGTTGG 21GCACTGGATACGACCCCCAA/11776 GAGA/11777 osa-miR1858aGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGAGAGGAGGACGG 19GCACTGGATACGACGCCCCA/11778 AG/11779 osa-miR1869GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGCGCTGAGAACAATAG 23GCACTGGATACGACTACCTC/11780 GCATGG/11781 osa-miR1879GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGCGCGTGTTTGGTTTAG 23GCACTGGATACGACCCACCT/11782 GGATG/11783 osa-miR1881GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGAATGTTATTGTA 24GCACTGGATACGACACACCA/11784 GCGTGG/11785 osa-miR2055GTCGTATCCAGTGCAGGGTCCGAGGTATTC AAGGCCTTTTCCTTGGGA 22GCACTGGATACGACGAAACC/11786 AGGT/11787 osa-miR2104GTCGTATCCAGTGCAGGGTCCGAGGTATTC TTAGCGGCGAGGGGATG 19GCACTGGATACGACCACGCT/11788 CG/11789 osa-miRf10849-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCTGGACTGTTTGGGG 20 akrGCACTGGATACGACAGAAGC/11790 GA/11791 osa-miRf11013-GTCGTATCCAGTGCAGGGTCCGAGGTATTC TAGGGTTTGCCGGAGTTG 19 akrGCACTGGATACGACTCTCCT/11792 G/11793 osa-miRf11341-GTCGTATCCAGTGCAGGGTCCGAGGTATTC TAGCGCGCCGACGATGA 19 akrGCACTGGATACGACACTCCAC/11794 CG/11795 osa-miRf11352-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGCGCAGGGATTTTGGA 22 akrGCACTGGATACGACTGTCAC/11796 AGGAG/11797 osa-miRf11355-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGTCGGTGGAGGTGGAG 21 akrGCACTGGATACGACTTTGGC/11798 CTGT/11799 osa-miRf11415-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGAGAGCAGGATGC 19 akrGCACTGGATACGACCCTTGG/11800 AG/11801 osa-miRf11595-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGCGCCATCGGTGTTGGA/ 18 akrGCACTGGATACGACGCCACC/11802 11803 osa-miRf11829-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGTCACGCGGAGGAGGT 19 akrGCACTGGATACGACAGAACA/11804 GG/11805 osa-miRf11996-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGGTCTTATAACCT 22 akrGCACTGGATACGACCCCCCG/11806 GAAA/11807 ppt-miR1220aGTCGTATCCAGTGCAGGGTCCGAGGTATTC GCGCTTCCGGTGGTGAGG 19GCACTGGATACGACCTATCT/11808 A/11809 ppt-miR166mGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCTCGGACCAGGCAT 19GCACTGGATACGACAAGGAA/11810 CA/11811 psi-miR159GTCGTATCCAGTGCAGGGTCCGAGGTATTC AAGGCCTCTTGGATTGAA 22GCACTGGATACGACTGGAGC/11812 GGGA/11813 pta-miR156aGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGCAGAAGATAGA 20GCACTGGATACGACGATGTG/11814 GAG/11815 pta-miR156bGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGCAGAAGATAGA 20GCACTGGATACGACGTTGTG/11816 GAG/11817 pta-miR166cGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGTCCCGGACCAGGCTTC 19GCACTGGATACGACCTGGGA/11818 A/11819 ptc-miR166pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGTCTCGGACCAGGCTCC 19GCACTGGATACGACAAGGAA/11820 A/11821 ptc-miRf10007-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGCATTGACAGGG 21 akrGCACTGGATACGACTGGTGA/11822 AAAC/11823 ptc-miRf10132-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGTCTTGGCGGTGATTGA 21 akrGCACTGGATACGACACCCTC/11824 ACG/11825 ptc-miRf10148-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCTGGTGCACCTGGTG/ 18 akrGCACTGGATACGACCTCCAC/11826 11827 ptc-miRf10226-GTCGTATCCAGTGCAGGGTCCGAGGTATTC AATCCTTCCTTTGGGGAG 23 akrGCACTGGATACGACAAGCTC/11828 ATGGA/11829 ptc-miRf10271-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTGGATTGAAG 21 akrGCACTGGATACGACTTAGAG/11830 GGAG/11831 ptc-miRf10734-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGCATCTAGGTGGT 21 akrGCACTGGATACGACCACTGG/11832 GGT/11833 ptc-miRf10976-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCTGGGAACGTGGCT 18 akrGCACTGGATACGACTAGCCA/11834 G/11835 ptc-miRf10985-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGCAGAAGATAGA 20 akrGCACTGGATACGACTCAGTG/11836 GAG/11837 ptc-miRf11018-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGCTGCAAACCTA 20 akrGCACTGGATACGACCCGCTC/11838 AGG/11839 ptc-miRf11079-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCAAGATGGAGAAGC 22 akrGCACTGGATACGACGCACGT/11840 AGGGC/11841 ptc-miRf11315-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGCCGATCAACTTAGAGT 21 akrGCACTGGATACGACCCACCC/11842 TGG/11843 ptc-miRf11324-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCCTTGTCGCAGGAG 21 akrGCACTGGATACGACAGCGCC/11844 AGAT/11845 ptc-miRf11396-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGCGCCAAGGCTCTGATA 21 akrGCACTGGATACGACTTGACA/11846 CCA/11847 ptc-miRf11669-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGCAAGGCTCTGA 20 akrGCACTGGATACGACAACATG/11848 TAC/11849 ptc-miRf11757-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCCTTGGTGAATGGTT 21 akrGCACTGGATACGACATTCCT/11850 GGG/11851 ptc-miRf11844-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCCCCAACTTGGAGGT 20 akrGCACTGGATACGACCCACAC/11852 GG/11853 ptc-miRf11847-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGGAAAGTGTGGA 21 akrGCACTGGATACGACGGCAAC/11854 GAAG/11855 ptc-miRf11953-GTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGGTAATCTGCATC 20 akrGCACTGGATACGACAACCTC/11856 CT/11857 ptc-miRf12389-GTCGTATCCAGTGCAGGGTCCGAGGTATTC TTCCGTCGACCTGGCGAG 21 akrGCACTGGATACGACCCCGGT/11858 TCA/11859 sbi-miR159aGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTTGGATTGAAG 21GCACTGGATACGACCAGAGC/11860 GGA/11861 smo-miR156bGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGCTGACAGAAGA 21GCACTGGATACGACGTGCTC/11862 TAGA/11863 tae-miR2003GTCGTATCCAGTGCAGGGTCCGAGGTATTC AACCGGTTGGGCTGTATG 19GCACTGGATACGACTCGCCA/11864 A/11865 vvi-miR2111-5pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTAATCTGCATCC 21GCACTGGATACGACTAGACC/11866 TGA/11867 vvi-miR394bGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGTTGGCATTCTGT 20GCACTGGATACGACGGAGGT/11868 CC/11869 zma-miR167uGTCGTATCCAGTGCAGGGTCCGAGGTATTC CCGGGGTGAAGCTGCCA 20GCACTGGATACGACCAGATC/11870 CAT/11871 zma-miR398a-5pGTCGTATCCAGTGCAGGGTCCGAGGTATTC CGGCGGGGCGAACTGAG 19GCACTGGATACGACCATGTG/11872 AA/11873

Example 5 Results of RT-PCR Validation of Selected miRNAs of theInvention

An RT-PCR analysis was run on selected microRNAs of the invention, usingthe stem-loop RT primers as described in Table 11b in Example 4 above.Total RNA was extracted from leaf tissues of soybean plants grown asdescribed above, and was used as a template for RT-PCR analysis.Expression level and directionality of several up-regulated anddown-regulated microRNAs that were found to be differential on themicroarray analysis were verified. Results are summarized in Table 12below.

TABLE 12 Summary of RT-PCR Verification Results on Selected miRNAs usingStem Loop RT (Alternative) Method Trait Mir Name p-Value Fold ChangeDrought gma-miR4376-5p 8.50E−03 2.38 (−) zma-miR396b-3p 4.60E−03 1.41(−) aly-miR396b-3p 3.80E−06 3.48 (−) gma-miR156g 5.40E−02 1.48 (+)gma-miRf10687-akr-homolog 7.80E−02 1.95 (+) Salt gma-miR159d 5.60E−053.35 (−) aly-miR396b-3p 3.80E−07 5.45 (−) gma-miR4416a 5.20E−04 2.58 (−)aly-miR396a-3p 1.20E−08 13.50 (−)  zma-miR396b-3p 4.90E−05 9.58 (−) HeatShock gma-miR4412-3p 1.50E−03 2.31 (−) csi-miR162-5p 2.60E−03 1.86 (−)ath-miRf10279-akr 2.40E−02 1.40 (−)

Example 6 Generation of Transgenic Plants

Gene Cloning Strategies for miRNA Molecules and Creation of BinaryVectors for Expression in Plants

The best validated miRNA sequences are cloned into pORE-E1 binaryvectors (FIG. 1) for the generation of transgenic plants. Thefull-length precursor sequence comprising of the hairpin sequence ofeach selected miRNA, is synthesized by Genscript (USA). The resultingclone is digested with appropriate restriction enzymes and inserted intothe Multi Cloning Site (MCS) of a similarly digested binary vectorthrough ligation using T4 DNA ligase enzyme (Promega, Madison, Wis.,USA).

Example 7 Generation of Transgenic Model Plants Expressing AbioticStress Associated miRNAs

Arabidopsis thaliana Transformation Protocol

Arabidoposis thaliana transformation is performed using the floral dipprocedure following a slightly modified version of the publishedprotocol (Clough and Bent, 1998, Plant J 16(6): 735-43; and Desfeux etal., 2000, Plant Physiol 123(3): 895-904). Briefly, T0 Plants areplanted in small pots filled with soil. The pots are covered withaluminum foil and a plastic dome, kept at 4° C. for 3-4 days, thenuncovered and incubated in a growth chamber at 24° C. under 16 hrlight:8 hr dark cycles. A week prior to transformation all individualflowering stems are removed to allow for growth of multiple floweringstems instead. A single colony of Agrobacterium (GV3101) carrying thebinary vectors (pORE-E1 or pORE-E3, see FIGS. 1 and 3, respectively),harboring the selected miRNA hairpin sequences with additional flankingsequences both upstream and downstream of it, is cultured in LB mediumsupplemented with kanamycin (50 mg/L) and gentamycin (25 mg/L). Threedays prior to transformation, each culture is incubated at 28° C. for 48hrs, shaking at 180 rpm. The starter culture is split the day beforetransformation into two cultures, which are allowed to grow further at28° C. for 24 hours at 180 rpm. Pellets containing the agrobacteriumcells are obtained by centrifugation of the cultures at 5000 rpm for 15minutes. The pellets are re-suspended in an infiltration medium (10 mMMgCl₂, 5% sucrose, 0.044 μM BAP (Sigma) and 0.03% Tween 20) preparedwith double-distilled water.

Transformation of T0 plants is performed by inverting each plant intothe agrobacterium suspension, keeping the flowering stem submerged for 5minutes. Following inoculation, each plant is blotted dry for 5 minuteson both sides, and placed sideways on a fresh covered tray for 24 hoursat 22° C. Transformed (transgenic) plants are then uncovered andtransferred to a greenhouse for recovery and maturation. The transgenicT0 plants are grown in the greenhouse for 3-5 weeks until the seeds areready, which are then harvested from plants and kept at room temperatureuntil sowing.

Tomato (Solanum Lycopersicum) Transformation Protocol

M82 tomato (Solanum lycopersicum) transformation is performed using aslightly modified protocol described previously (McCormick 1991, PlantTissue Culture Manual, Vol. B6, Lindsey, K., ed. Dordrecht, TheNetherlands: Kluwer Academic Publishers, pp. 1-9). Briefly, seeds aresurface-sterilized 10 days prior to transformation by soaking andshaking in 70% ethanol followed by a 3% bleach solution. After washing,seeds are sown and allowed to grow into seedlings. Cotyledons are cutand treated with an agrobacterium (GV3101, carrying the binary vectorpORE-E2, see FIG. 2) solution using a gentle agitation, dried and lefton feeder medium for two days in the dark. Then, cotyledons aretransferred to a first selection medium (Jones I) for two weeks,followed by a two-week incubation in a second selection medium (JonesII) for callus initiation. Cotyledons are transferred every two weeks toa fresh selection medium (Jones II) until plantlet forms. Plantlets withactive meristems are separated from the callus and transferred to athird selection medium (Jones III), and transferred into a rootingmedium. Once roots form, the plantlets are planted in soil.

Transgenic Arabidopsis Plants Over-Expressing Selected microRNASequences

Several microRNAs of the invention were selected for over-expression inboth Arabidopsis. Transformation protocols are followed as describedabove for each plant, and agrobacterium is utilized, carrying one ofthree binary vectors: pORE-E1, pORE-E2, or pORE-E3.

Arabidopsis transgenic plants were created with osa-miRf11996-akr of theinvention. This miRNA was downregulated under drought and salinitystresses compared to optimal conditions. Thus, the researchers testedthe effects of modifying its expression level in model Arabidopsisplants. Four transgenic plants over-expressing osa-miRf11996-akr (inbinary vector pORE-E3) were created and compared to control Columbiaplants. Transgenic and control plants were grown under 16 h light:8 hdark regime at 22° C. in controlled growth rooms until seedlings werefour weeks old. Next, plants were divided into two groups: controlplants were irrigated with tap water twice a week and treated plantswere either subjected to drought and received no irrigation for 5 days,or irrigated with 300 mM NaCl solution for 10 days for salinity stressinduction. At the end of each treatment, plants were harvested and dryweight was recorded.

An ANOVA test was applied for statistical analysis of the data andresults are summarized in Table 13 below. Control plants' dry weight wasaveraged and recorded as 100%, to be used as a reference for comparisonto the average of each treated strain for each condition. Interestingly,the dry weight of all transgenic strains over-expressingosa-miRf11996-akr was significantly (p<1.0E-6) decreased compared towild type control plants under all conditions. These results correlatewith the fact that osa-miRf11996-akr was shown to be down-regulatedunder various abiotic stresses (e.g., Tables 2 and 4), thus indicatingthat its expression level needs to be decreased to improve a plant'stolerance to abiotic stress. Accordingly, the researchers alsodown-regulate osa-miRf11996-akr in Arabidopsis plants by using targetmimic, as described and explained in Example 12 below.

TABLE 13 Dry Weight Results of Control and Transgenic (Over-expressingosa-miRf11996-akr) Arabidopsis Plants. Number of Dry Weight % TreatmentStrain Dry weight +− SD Plants of Control No Control  483.353 +− 113.07017 treatment 11996-2 305.909 +− 88.033 22 63.29% 11996-3 231.500 +−72.002 26 47.90% 11996-5 179.194 +− 71.185 31 37.07% 11996-7  285.158 +−101.236 19 59.00% Drought Control 225.478 +− 99.687 23 11996-2 170.000+− 60.393 21 75.40% 11996-3 157.269 +− 63.415 26 69.75% 11996-5 186.353+− 92.723 20 82.65% 11996-7 179.818 +− 68.019 22 79.75% Salinity Control210.895 +− 76.991 19 11996-2  77.143 +− 41.214 21 36.58% 11996-3 109.130+− 60.144 23 51.75% 11996-5 103.480 +− 44.930 25 49.07% 11996-7 116.789+− 64.514 19 55.38%

Example 8 Selection of Transgenic Arabidopsis Plants Expressing AbioticStress Genes According to Expression Level

Arabidopsis seeds are sown and Basta is sprayed for the first time on1-2 weeks old seedlings, at least twice every few days. Only resistantplants, which are heterozygous for the transgene, survive. PCR on thegenomic gene sequence is performed on the surviving seedlings usingprimers pORE-F2 (fwd, 5′-TTTAGCGATGAACTTCACTC-3′, SEQ ID NO: 11614) anda custom designed reverse primer based on each small RNA sequence.

Example 9 Evaluating Changes in Root Architecture of Transgenic Plants

Many key traits in modern agriculture can be explained by changes in theroot architecture of the plant. Root size and depth have been shown tologically correlate with drought tolerance and fertilizer useefficiency, since deeper and more branched root systems provide bettercoverage of the soil and can access water and nutrients stored in deepersoil layers.

To test whether the transgenic plants produce a modified root structure,plants can be grown in agar plates placed vertically. A digital pictureof the plates is taken every few days and the maximal length and totalarea covered by the plant roots are assessed. From every constructcreated, several independent transformation events are checked inreplicates. To assess significant differences between root features,statistical test, such as a Student's t-test, is employed in order toidentify enhanced root features and to provide a statistical value tothe findings.

Example 10 Abiotic Stress Tolerance Assessments of Control andTransgenic Plants

Transgenic plants expressing the polynucleotides of some embodiments ofthe invention exhibit tolerance to abiotic stress in the form of extremedeficiency in water, high salt concentrations, or heat shock and exhibitbetter overall survival and growth compared to control non-transgenicplants.

Quantitative parameters of tolerance measured include, but are notlimited to, the average wet and dry weight, growth rate, leaf size, leafcoverage (overall leaf area), the weight of the seeds yielded, theaverage seed size and the number of seeds produced per plant. Undernormal conditions (non-stress, optimal growth conditions), transgenicplants exhibit a phenotype equivalent or superior to that of the wildtype plants. Following stress induction, transformed plants notexhibiting substantial physiological and/or morphological effects, orexhibiting higher biomass than wild-type plants, are identified asabiotic stress tolerant plants. Following are a number of screens aimedat identifying the transgenic plants which exhibit abiotic stresstolerance according to some embodiments of the invention.

Soil-Based Drought Tolerance Assay

Screens are performed with plants over-expressing the differential smallRNAs detailed above. Briefly, seeds from control Arabidopsis plants, orother transgenic plants over-expressing the small RNA molecule of theinvention are germinated and transferred to pots. Drought stress isobtained when irrigation is ceased and the two plant types (transgenicand control plants) are compared when most control plants develop severewilting, at which point rehydration of the plants is initiated.Transgenic plants are ranked on two levels compared to controls: (1)tolerance to drought conditions, and (2) recovery (survival) followingre-watering.

To illustrate and elaborate on the above drought tolerance assays of anygiven wild type plant compared to a corresponding transgenic plant (inwhich a drought-associated miRNA has been over-expressed), two differentapproaches are taken as follows:

Lethal drought stress—whereby wild type (used as a control) andtransgenic plants (1-3 weeks old) are grown under prolonged extremedrought conditions (duration varies in accordance with plant species).Next, a recovery attempt is implemented during which plants areregularly irrigated and survival level is estimated in the two plantgroups 1-2 days post irrigation initiation. While the control (wildtype) plant is not expected to survive this extreme stress, thetransgenic plant is expected to demonstrate some improved droughttolerance, usually within hours of re-hydration.

Non-lethal drought stress—whereby wild type (used as a control) andtransgenic plants (1-3 weeks old) are grown under regular short-termcycles of drought and re-hydration steps, such that re-hydration isapplied when general visible drought symptoms (e.g., evident decrease inturgor pressure of lower leaves) emerge in the experimental plants. Thisdrought/irrigation alternating treatment continues until the floweringstage of the plants is reached, followed by an evaluation of dry matterweight. Both wild type and transgenic plants are expected to survivethis non-lethal stress, however, measurable differences in droughttolerance are demonstrated by increased yield of the transgenic comparedwith the wild type plants.

Drought Tolerance Assay Using Sorbitol

Another assay designed to assess whether transgenic plants are moretolerant to drought or severe water deprivation compared to controlplants, involves induction of an osmotic stress by the non-ionicosmolyte sorbitol. Control and transgenic plants are germinated andgrown in plant-agar plates for 4 days, after which they are transferredto plates containing 500 mM sorbitol, to cause delayed growth. Followingthe stress treatment, control and transgenic plants are compared bymeasuring plant weight (wet and dry), yield, and growth rate measured astime to flowering.

Methods for Salinity Tolerance Assessment

Osmotic stress assays, such as chloride and mannitol assays, are aimedto determine whether an osmotic stress phenotype is sodiumchloride-specific or a result of a general osmotic stress. Plants whichare tolerant to osmotic stress may also exhibit tolerance to droughtand/or freezing. For salt and osmotic stress germination experiments,the medium is supplemented with 50, 100, or 200 mM NaCl or 100 mM, 200mM NaCl, 400 mM mannitol.

Methods for Heat Stress Tolerance Assessment

Heat stress tolerance is achieved by exposing the plants to temperaturesabove 34° C. for a certain period. Plant tolerance is examined aftertransferring the plants back to 22° C. for recovery and evaluation after5 days relative to internal controls (non-transgenic plants) or plantsnot exposed to neither cold nor heat stress.

Methods for Cold Stress Tolerance Assessment

To analyze cold stress, mature (25 day old) plants are transferred to 4°C. chambers for 1 or 2 weeks, with constitutive light. Next, plants aremoved back to the greenhouse for 2 weeks to recover. Following therecovery period, chilling damages such as growth retardation aredetermined based on measurements of plant weight (wet and dry) andgrowth rates (e.g. time to flowering, plant size, yield, etc) taken oncontrol and transgenic plants.

Example 11 Testing Morphologic Parameters in Transgenic Plants

To analyze whether the transgenic Arabidopsis plants are more tolerantto abiotic stresses, plants are grown under optimal versus stressconditions, i.e either drought for five days without irrigation, or highsalt conditions for ten days, or a one-hour heat shock. Plants areallowed to grow until seed production, followed by an analysis of theiroverall size, time to flowering, yield, and protein content of shootand/or grain. Additional parameters checked can be the overall size ofthe plant, wet and dry weight, the weight of the seeds yielded, theaverage seed size and the number of seeds produced per plant.Transformed plants not exhibiting substantial physiological and/ormorphological effects, or exhibiting higher measured parameters levelscompared to wild-type plants, are identified as abiotic stress tolerantplants.

Example 12 Method for Generating Transgenic Plants with Enhanced orReduced miRNA Regulation of Target Genes

Target prediction enables two contrasting strategies; an enhancement(positive) or a reduction (negative) of small RNA regulation. Both thesestrategies have been used in plants and have resulted in significantphenotype alterations. For complete in-vivo assessment of the phenotypiceffects of the differential small RNAs of this invention, the inventorsplan to implement both over-expression and down-regulation methods onthe small RNA molecules found to associate with abiotic stress toleranceas listed in Tables 1-6. In the case of small RNAs that wereup-regulated under abiotic stress conditions, an enhancement in abioticstress tolerance can theoretically be achieved by maintaining theirdirectionality, i.e. over-expressing them. Conversely, in the case ofsmall RNAs that were down-regulated under abiotic stress conditions,enhancement in tolerance can be achieved by reducing their regulation.Regulation reduction of small RNA target genes can be accomplished inone of two approaches:

Expressing a miRNA-Resistant Target

In this method, silent mutations are introduced in the miRNA bindingsite of the target gene so that the DNA and resulting RNA sequences arechanged to prevent miRNA binding, but the amino acid sequence of theprotein is unchanged.

For design of miRNA-resistant target sequences for the small RNAmolecules of the invention, optimization of the nucleic acid sequence inaccordance with the preferred codon usage for a particular plant speciesis required. Tables such as those provided on-line at the Codon UsageDatabase through the NCBI (National Center for BiotechnologyInformation) webpage (Hypertext Transfer Protocol://World Wide Web (dot)ncbi (dot) nlm (dot) nih (dot) gov/Taxonomy/Utils/wprintgc (dot) cgi)were used. The Genbank database contains codon usage tables for a numberof different species, with its Table 11 (The Bacterial, Archaeal andPlant Plastid Code) being the most relevant for plant species of thisinvention. Mir-resistant target examples for upregulated anddownregulated miRs of the invention are presented in Tables 14-15 below.

TABLE 14 miRNA-Resistant Target Examples for Selected upregulated miRNAsof the Invention. NCBI mutated Mir nucleotide Mir Binding sequence/SEQname Homolog NCBI Accession Site ID NO: aqc- XP_003543825 0 miR159958-978 11091 958-978 11092 XP_003541563 0 1111-1131 11093 1111-113111094 XP_003556814 0 952-972 11095 952-972 11096 XP_003526354 0 928-94811097 928-948 11098 XP_003523913 0 931-951 11099 931-951 11100XP_003545791 0 934-954 11101 934-954 11102 ath- XP_003542140 0 miR159b404-424 11103 404-424 11104 ath- XP_003519140 0 miR159c 143-163 11105143-163 11106 XP_003531162 0 2030-2050 11107 2030-2050 11108XP_003524148 0 1188-1208 11109 1188-1208 11110 XP_003547199 0 1263-128311111 1263-1283 11112 XP_003541668 0 1329-1349 11113 1329-1349 11114ath- XP_003525932 0 miRf10240- akr 357-376 11115 357-376 11116XP_003523287 0 864-883 11117 864-883 11118 XP_003547951 0 1451-147011119 1451-1470 11120 XP_003629354 0 1224-1243 11121 1224-1243 11122ath- XP_003543893 0 miRf10368- akr 584-603 11123 584-603 11124XP_003539013 0 599-618 11125 599-618 11126 XP_003556840 0 727-746 11127727-746 11128 XP_003538207 0 1733-1752 11129 1733-1752 11130 ath-XP_003520499 0 miRf10763- akr 245-264 11131 245-264 11132 XP_003519685 0240-259 11133 240-259 11134 ACU17625 0 176-195 11135 176-195 11136XP_003527981 0 558-577 11137 558-577 11138 XP_003547100 0 1686-170511139 1686-1705 11140 XP_003524815 0 524-543 11141 524-543 11142 csi-XP_003547789 0 miR3948 31-54 11143 31-54 11144 XP_003527776 0 46-6911145 46-69 11146 XP_003550061 0 178-201 11147 178-201 11148XP_003525811 0 178-201 11149 178-201 11150 XP_003539180 0 283-306 11151283-306 11152 BAD18437 0 278-301 11153 278-301 11154 ghr- XP_003529456 0miR2950 1017-1037 11155 1017-1037 11156 XP_003554852 0 380-400 11157380-400 11158 gma- XP_003520455 0 miR156g 737-756 11159 737-756 11160XP_003553428 0 734-753 11161 734-753 11162 XP_003520534 0 734-753 11163734-753 11164 XP_003553944 0 1089-1108 11165 1089-1108 11166XP_003551188 0 1046-1065 11167 1046-1065 11168 XP_003532399 0 941-96011169 941-960 11170 XP_003549130 0 1034-1053 11171 1034-1053 11172XP_003550514 0 706-725 11173 706-725 11174 XP_003525415 0 1214-123311175 1214-1233 11176 XP_003538544 0 1269-1288 11177 1269-1288 11178XP_003525436 0 1333-1352 11179 1333-1352 11180 XP_003550708 0 1184-120311181 1184-1203 11182 XP_003520128 0 1007-1026 11183 1007-1026 11184XP_003523155 0 959-978 11185 959-978 11186 XP_003551421 0 758-777 11187758-777 11188 XP_003522278 0 1262-1281 11189 1262-1281 11190 gma-Redundant target XP_003549130 0 miR157c gma- Redundant targets:XP_003542140, XP_003543825, miR159a- XP_003526354, XP_003541563,XP_003556814, XP_003545791, 3p XP_003523913. iba- Redundant targets:XP_003520455, XP_003553428, miR157 XP_003520534, XP_003553944,XP_003551188, XP_003532399, XP_003549130, XP_003525415, XP_003538544,XP_003525436, XP_003520128, XP_003551421, XP_003523155, XP_003550708,XP_003522278 mdm- XP_003528897 miR482a- 5p 940-960 11191 940-960 11192940-960 11193 940-960 11194 osa- Redundant targets: XP_003543825,XP_003531162, miR159e XP_003526354, XP_003524148, XP_003547199,XP_003541563, XP_003556814, XP_003541668, XP_003523913, XP_003545791.osa- Redundant targets: XP_003543825, XP_003526354, miR159fXP_003541563, XP_003556814, XP_003523913, XP_003545791. osa-XP_003555849 miR1850.1 147-167 11195 147-167 11196 XP_003534041 0 29-4911197 29-49 11198 XP_003548988 0 451-471 11199 451-471 11200 osa-XP_003521247 0 miR1858a 287-307 11201 287-307 11202 NP_001235053 0281-301 11203 281-301 11204 XP_003530234 0 368-388 11205 368-388 11206XP_003551508 0 377-397 11207 377-397 11208 XP_003528545 0 131-151 11209131-151 11210 XP_003547641 0 155-175 11211 155-175 11212 XP_003543554 0185-205 11213 185-205 11214 XP_003556667 0 131-151 11215 131-151 11216osa- XP_003546711 0 miRf11829- akr 346-366 11217 346-366 11218 ACI234600 334-354 11219 334-354 11220 XP_003541398 0 365-385 11221 365-385 11222psi- Redundant targets: XP_003543825, XP_003526354, miR159 XP_003541563,XP_003556814, XP_003545791, XP_003523913. pta- Redundant targets:XP_003549130, XP_003553428, miR156a XP_003553944, XP_003525436,XP_003520455, XP_003520128, XP_003550708, XP_003523155, XP_003551421,XP_003522278. pta- XP_003551276 miR156b 202-221 11223 202-221 11224202-221 11225 202-221 11226 ptc- XP_003527653 miRf10132- akr 128-15011227 128-150 11228 128-150 11229 ptc- XP_003549610 0 miRf10226- akr123-145 11230 123-145 11231 XP_003525906 0 174-196 11232 174-196 11233XP_003547131 0 2282-2304 11234 2282-2304 11235 XP_003542817 0 240-26211236 240-262 11237 ptc- Redundant targets: XP_003543825, XP_003526354,miRf10271- XP_003541563, XP_003556814, XP_003523913, XP_003545791. akrptc- XP_003520774 0 miRf10734- akr 1439-1459 11238 1439-1459 11239XP_003538849 0 1187-1207 11240 1187-1207 11241 ptc- XP_003546504 0miRf10985- akr 1472-1491 11242 1472-1491 11243 XP_003545057 0 3399-341811244 3399-3418 11245 ptc- XP_003550774 0 miRf11315- akr 311-330 11246311-330 11247 XP_003518840 0 255-274 11248 255-274 11249 ptc-XP_003612685 0 miRf11757- akr 388-410 11250 388-410 11251 388-410 11252388-410 11253 ath- Redundant targets: XP_003525415, XP_003553428,miR157a XP_003538544, XP_003553944, XP_003551188, XP_003525436,XP_003520455, XP_003523155, XP_003551421, XP_003549130, XP_003522278.sbi- Redundant targets: XP_003543825, XP_003526354, miR159aXP_003541563, XP_003556814. smo- XP_003528960 miR156b 462-482 11254462-482 11255 462-482 11256 462-482 11257

TABLE 15 miRNA-Resistant Target Examples for Selected down-regulatedmiRNAs of the Invention. NCBI Mir Mutated Nucleotide Homolog NCBIBinding Sequence/ Mir name Accession Site SEQ ID NO: bdi-miR2508XP_003530212 689-710 11258 689-710 11259 XP_003530213 0 794-815 11260794-815 11261 XP_003551482 0 689-710 11262 689-710 11263 XP_003548937 01148-1169 11264 1148-1169 11265 XP_003551299 0 733-754 11266 733-75411267 XP_003520176 0 2159-2180 11268 2159-2180 11269 XP_003544873 0656-677 11270 656-677 11271 XP_003552227 0 665-686 11272 665-686 11273XP_003539077 0 713-734 11274 713-734 11275 XP_003552179 0 701-722 11276701-722 11277 NP_001236616 0 698-719 11278 698-719 11279 XP_003540719 0707-728 11280 707-728 11281 XP_003522150 0 662-683 11282 662-683 11283bra-miR160a-3p XP_003530952 0 1283-1303 11284 1283-1303 11285gma-miR2119 XP_003542005 0 212-232 11286 212-232 11287 XP_003521584 0421-441 11288 421-441 11289 XP_003524240 0 1982-2002 11290 1982-200211291 XP_003545664 0 96-116 11292 96-116 11293 XP_003532800 0 1982-200211294 1982-2002 11295 XP_003547559 0 2084-2104 11296 2084-2104 11297gso-miR482a NP_001237600 0 1153-1173 11298 1153-1173 11299 XP_0035336060 523-543 11300 523-543 11301 XP_003518623 0 444-464 11302 444-464 11303AAF44087 0 Jan-21 11304 Jan-21 11305 osa-miR162a XP_003528812 612-63211306 612-632 11307 612-632 11308 612-632 11309 osa-miR1846eXP_003531668 0 471-490 11310 471-490 11311 XP_003529761 0 363-382 11312363-382 11313 XP_003530142 0 366-385 11314 366-385 11315 ppt-miR166mXP_003553029 0 530-550 11316 530-550 11317 XP_003597690 0 875-895 11318875-895 11319 XP_002285176 0 562-582 11320 562-582 11321 XP_003530109 0906-926 11322 906-926 11323 XP_003524993 0 1030-1050 11324 1030-105011325 XP_003522716 0 825-845 11326 825-845 11327 XP_003530112 0 606-62611328 606-626 11329 XP_003532788 0 577-597 11330 577-597 11331XP_003537529 0 515-535 11332 515-535 11333 XP_003531653 0 777-797 11334777-797 11335 XP_003539764 0 1227-1247 11336 1227-1247 11337XP_003539765 0 1227-1247 11338 1227-1247 11339 ptc-miRf10007-akrXP_003550796 1378-1398 11340 1378-1398 11341 1378-1398 11342 1378-139811343 ptc-miRf10976-akr XP_003533044 0 318-337 11344 318-337 11345XP_003528486 0 267-286 11346 267-286 11347 XP_003548151 0 885-904 11348885-904 11349 NP_001238468 0 245-264 11350 245-264 11351ptc-miRf11396-akr XP_003520116 764-785 11352 764-785 11353 764-785 11354764-785 11355 ptc-miRf11669-akr XP_003554103 208-227 11356 208-227 11357208-227 11358 208-227 11359

Expressing a Target-Mimic Sequence

Plant miRNAs usually lead to cleavage of their targeted gene, with thiscleavage typically occurring between bases 10 and 11 of the miRNA. Thisposition is therefore especially sensitive to mismatches between themiRNA and the target. It was found that expressing a DNA sequence thatcould potentially be targeted by a miRNA, but contains three extranucleotides (ATC), and thus creating a bulge in a key position (betweenthe two nucleotides that are predicted to hybridize with bases 10-11 ofthe miRNA), can inhibit the regulation of that miRNA on its nativetargets (Franco-Zorilla et al., 2007, Nat Genet 39(8):1033-1037).

This type of sequence is referred to as a “target-mimic”. Inhibition ofthe miRNA regulation is presumed to occur through physically capturingthe miRNA by the target-mimic sequence and tittering-out the miRNA,thereby reducing its abundance. This method was used to reduce theamount and, consequentially, the regulation of miRNA 399 in Arabidopsis.Target mimic examples for upregulated and down-regulated miRs of theinvention are presented in Tables 16-17 below.

TABLE 16 Target Mimic Examples for Selected upregulated miRNAs of theInvention. Mimic Reverse Full Target Mimic Complement Mir/SEQ IDNucleotide Sequence/ Mir Name NO: SEQ ID NO: ahy-miR3514- 11360 11437 5paly-miR831- 11361 11438 5p aqc-miR159 11362 11439 ath-miR157a 1136311440 ath-miR159b 11364 11441 ath-miR159c 11365 11442 ath- 11366 11443miRf10068- akr ath- 11367 11444 miRf10148- akr ath- 11368 11445miRf10209- akr ath- 11369 11446 miRf10240- akr ath- 11370 11447miRf10368- akr ath- 11371 11448 miRf10451- akr ath- 11372 11449miRf10633- akr ath- 11373 11450 miRf10687- akr ath- 11374 11451miRf10701- akr ath- 11375 11452 miRf10702- akr ath- 11376 11453miRf10751- akr ath- 11377 11454 miRf10763- akr ath- 11378 11455miRf10924- akr ath- 11379 11456 miRf11021- akr ath- 11380 11457miRf11037- akr ath- 11381 11458 miRf11042- akr ath- 11382 11459miRf11045- akr csi-miR3946 11383 11460 csi-miR3948 11384 11461far-miR1134 11385 11462 ghr-miR2950 11386 11463 gma-miR156g 11387 11464gma-miR157c 11388 11465 gma- 11389 11466 miR159a-3p iba-miR157 1139011467 mdm- 11391 11468 miR482a-5p mtr-miR2119 11392 11469 osa-miR159e11393 11470 osa-miR159f 11394 11471 osa- 11395 11472 miR1850.1osa-miR1858a 11396 11473 osa-miR1869 11397 11474 osa-miR1874- 1139811475 3p osa-miR1879 11399 11476 osa-miR1881 11400 11477 osa-miR205511401 11478 osa- 11402 11479 miRf10105- akr osa- 11403 11480 miRf10362-akr osa- 11404 11481 miRf10839- akr osa- 11405 11482 miRf11013- akr osa-11406 11483 miRf11341- akr osa- 11407 11484 miRf11352- akr osa- 1140811485 miRf11355- akr osa- 11409 11486 miRf11595- akr osa- 11410 11487miRf11649- akr osa- 11411 11488 miRf11829- akr pab-miR3711 11412 11489ppt-miR1220a 11413 11490 ppt-miR895 11414 11491 psi-miR159 11415 11492pta-miR156a 11416 11493 pta-miR156b 11417 11494 ptc- 11418 11495miRf10132- akr ptc- 11419 11496 miRf10148- akr ptc- 11420 11497miRf10226- akr ptc- 11421 11498 miRf10271- akr ptc- 11422 11499miRf10300- akr ptc- 11423 11500 miRf10522- akr ptc- 11424 11501miRf10619- akr ptc- 11425 11502 miRf10734- akr ptc- 11426 11503miRf10985- akr ptc- 11427 11504 miRf11315- akr ptc- 11428 11505miRf11757- akr ptc- 11429 11506 miRf11844- akr ptc- 11430 11507miRf11847- akr ptc- 11431 11508 miRf11855- akr sbi-miR159a 11432 11509smo- 11433 11510 miR1103-3p smo-miR156b 11434 11511 tae-miR2003 1143511512 zma-miR482- 11436 11513 5p

TABLE 17 Target Mimic Examples for Selected downregulated miRNAs of theInvention. Full Target Mimic Nucleotide Mimic Reverse Sequence/SEQ IDMir Name Complement Mir/SEQ ID NO: NO: aly-miR160c-3p 11514 11564aly-miR396a-3p 11515 11565 aly-miR396b-3p 11516 11566 ath-miRf10197-akr11517 11567 ath-miRf10239-akr 11518 11568 ath-miRf10279-akr 11519 11569bdi-miR2508 11520 11570 bna-miR2111b-5p 11521 11571 bra-miR160a-3p 1152211572 csi-miR162-5p 11523 11573 ctr-miR171 11524 11574 gma-miR1507a11525 11575 gma-miR1524 11526 11576 gma-miR159d 11527 11577 gma-miR211911528 11578 gma-miR396d 11529 11579 gma-miR4371b 11530 11580gma-miR4376-5p 11531 11581 gma-miR4412-3p 11532 11582 gma-miR4416a 1153311583 gma-miR482a-3p 11534 11584 gma-miR482b-5p 11535 11585 gso-miR169g*11536 11586 gso-miR482a 11537 11587 osa-miR162a 11538 11588 osa-miR1846e11539 11589 osa-miR2104 11540 11590 osa-miRf10151-akr 11541 11591osa-miRf10849-akr 11542 11592 osa-miRf11415-akr 11543 11593osa-miRf11996-akr 11544 11594 ppt-miR166m 11545 11595 ppt-miR533b-5p11546 11596 pta-miR166c 11547 11597 ptc-miR166p 11548 11598ptc-miRf10007-akr 11549 11599 ptc-miRf10976-akr 11550 11600ptc-miRf11018-akr 11551 11601 ptc-miRf11079-akr 11552 11602ptc-miRf11324-akr 11553 11603 ptc-miRf11396-akr 11554 11604ptc-miRf11669-akr 11555 11605 ptc-miRf11953-akr 11556 11606ptc-miRf12069-akr 11557 11607 ptc-miRf12389-akr 11558 11608vvi-miR2111-5p 11559 11609 vvi-miR394b 11560 11610 zma-miR167u 1156111611 zma-miR396b-3p 11562 11612 zma-miR398a-5p 11563 11613

TABLE 18 Abbreviations of plant species Common Name Organism NameAbbreviation Peanut Arachis hypogaea ahy Arabidopsis lyrata Arabidopsislyrata aly Rocky Mountain Columbine Aquilegia coerulea aqc Tausch'sgoatgrass Aegilops taushii ata Arabidopsis thaliana Arabidopsis thalianaath Grass Brachypodium distachyon bdi Brassica napus canola (“liftit”)Brassica napus bna Brassica oleracea wild cabbage Brassica oleracea bolBrassica rapa yellow mustard Brassica rapa bra Clementine Citrusclementine ccl Orange Citrus sinensis csi Trifoliate orange Citrustrifoliata ctr Glycine max Glycine max gma Wild soybean Glycine soja gsoBarley Hordeum vulgare hvu Lotus japonicus Lotus japonicus lja Medicagotruncatula - Barrel Clover (“tiltan”) Medicago truncatula mtr Oryzasativa Oryza sativa osa European spruce Picea abies pab Physcomitrellapatens (moss) Physcomitrella patens ppt Pinus taeda - Loblolly PinePinus taeda pta Populus trichocarpa - black cotton wood Populustrichocarpa ptc Castor bean (“kikayon”) Ricinus communis rco Sorghumbicolor Dura Sorghum bicolor sbi tomato microtom Solanum lycopersicumsly Selaginella moellendorffii Selaginella moellendorffii smo SugarcaneSaccharum officinarum sof Sugarcane Saccharum spp ssp Triticum aestivumTriticum aestivum tae cacao tree and cocoa tree Theobroma cacao tccVitis vinifera Grapes Vitis vinifera vvi corn Zea mays zma

Although the invention has been described in conjunction with specificembodiments thereof, it is evident that many alternatives, modificationsand variations will be apparent to those skilled in the art.Accordingly, it is intended to embrace all such alternatives,modifications and variations that fall within the spirit and broad scopeof the appended claims.

All publications, patents and patent applications mentioned in thisspecification are herein incorporated in their entirety by referenceinto the specification, to the same extent as if each individualpublication, patent or patent application was specifically andindividually indicated to be incorporated herein by reference. Inaddition, citation or identification of any reference in thisapplication shall not be construed as an admission that such referenceis available as prior art to the present invention. To the extent thatsection headings are used, they should not be construed as necessarilylimiting.

1. A method of improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of a plant, the method comprising: (i) expressing within the plant an exogenous polynucleotide which downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence at least 90% identical to SEQ ID NOs: 139, 57-79, 202-219, 126-138, 140-161, 236-255, 169-173, 260-261, 3953-5114, 5117-6277, 6278, 11905-11909, 11940-11955, 11959-11961; (ii) expressing within the plant an exogenous polynucleotide having a nucleic acid sequence at least 90% identical to SEQ ID NOs: 1-56, 174-201, 80-125, 220-235, 162-168, 256-259, 262-2086, 2087-3910, 3911, 11616, 11615, 11874, 11875-11904, 11910-11939, 11956, 11957 or 11958; (iii) expressing within the plant an exogenous polynucleotide encoding a polypeptide having an amino acid sequence at least 80% homologous or identical to SEQ ID NOs: 9591-10364; or (iv) expressing within the plant an exogenous polynucleotide which downregulates an activity or expression of a polypeptide having an amino acid sequence at least 80% homologous or identical to SEQ ID NOs: 6315-8129, thereby improving abiotic stress tolerance, nitrogen use efficiency, biomass, vigor or yield of the plant.
 2. (canceled)
 3. A transgenic plant expressing an exogenous polynucleotide having a nucleic acid sequence: (i) at least 90% identical to SEQ ID NOs: 1-56, 174-201, 80-125, 220-235, 162-168, 256-259, 262-2086, 2087-3910, 3911, 11616, 11615, 11874, 11875-11904, 11910-11939, 11956, 11957 or 11958; (ii) at least 90% identical to SEQ ID NOs: 139, 57-79, 202-219, 126-138, 140-161, 236-255, 169-173, 260-261, 3953-5114, 5117-6277, 6278, 11905-11909, 11940-11955, 11959-11961; (iii) encoding a polypeptide having an amino acid sequence at least 80% homologous or identical to SEQ ID NOs: 9591-10364; or (iv) which downregulates an activity or expression of a polypeptide having an amino acid sequence at least 80% homologous or identical to SEQ ID NOs: 6315-8129, wherein said nucleic acid sequence is capable of regulating abiotic stress tolerance of the plant.
 4. The method of claim 1, wherein said exogenous polynucleotide encodes a precursor of said nucleic acid sequence, said nucleic acid sequence being at least 90% identical to SEQ ID NOs. 1-56, 174-201, 80-125, 220-235, 162-168, 256-259, 262-2086, 2087-3910, 3911, 11616, 11615, 11874, 11875-11904, 11910-11939, 11956, 11957 or
 11958. 5. The transgenic plant of claim 3, wherein said exogenous polynucleotide encodes a precursor of said nucleic acid sequence, said nucleic acid sequence being at least 90% identical to SEQ ID NOs. 1-56, 174-201, 80-125, 220-235, 162-168, 256-259, 262-2086, 2087-3910, 3911, 11616, 11615, 11874, 11875-11904, 11910-11939, 11956, 11957 or
 11958. 6. The method of claim 1, wherein said exogenous polynucleotide encodes an miRNA-Resistant Target as set forth in SEQ ID NO: 11258-11359 that downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence at least 90% identical to SEQ ID NOs: 139, 57-79, 202-219, 126-138, 140-161, 236-255, 169-173, 260-261, 3953-5114, 5117-6277, 6278, 11905-11909, 11940-11955 and 11959-11961.
 7. The transgenic plant of claim 3, wherein said exogenous polynucleotide encodes a miRNA-Resistant Target as set forth in SEQ ID NO: 11258-11359 that downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence at least 90% identical to SEQ ID NOs: 139, 57-79, 202-219, 126-138, 140-161, 236-255, 169-173, 260-261, 3953-5114, 5117-6277, 6278, 11905-11909, 11940-11955, 11959-11961.
 8. The transgenic plant of claim 3, wherein said exogenous polynucleotide encodes a target mimic as set forth in SEQ ID NO: 11564-11613 that downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence at least 90% identical to SEQ ID NOs: 139, 57-79, 202-219, 126-138, 140-161, 236-255, 169-173, 260-261, 3953-5114, 5117-6277, 6278, 11905-11909, 11940-11955, 11959-11961.
 9. The method of claim 1, wherein said exogenous polynucleotide which encodes a miRNA-Resistant Target as set forth in SEQ ID NO: 11564-11613 that downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence at least 90% identical to SEQ ID NOs: 139, 57-79, 202-219, 126-138, 140-161, 236-255, 169-173, 260-261, 3953-5114, 5117-6277, 6278, 11905-11909, 11940-11955, 11959-1196.
 10. The transgenic plant of claim 3, wherein said exogenous polynucleotide which encodes a miRNA-Resistant Target as set forth in SEQ ID NO: 11091-11257 that downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence at least 90% identical to SEQ ID NOs: 139, 57-79, 202-219, 126-138, 140-161, 236-255, 169-173, 260-261, 3953-5114, 5117-6277, 6278, 11905-11909, 11959-11961, 11940-11955.
 11. The transgenic plant of claim 3, wherein said exogenous polynucleotide encodes a target mimic as set forth in SE ID NO: 11437-11513 that downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence at least 90% identical to SEQ ID NOs: 139, 57-79, 202-219, 126-138, 140-161, 236-255, 169-173, 260-261, 3953-5114, 5117-6277, 6278, 11905-11909, 11959-11961, 11940-11955. 12-15. (canceled)
 16. An isolated polynucleotide which downregulates an activity or expression of a gene encoding an RNAi molecule having a nucleic acid sequence selected from the group consisting of SEQ ID NOs: 1-201, 202-235, 236-3910, 3911, 3953-5114, 5117-6277, 6278, 11615, 11616, 11874, 11875-11904, 11905-11909, 11910-11939, 11940-11955, 11956, 11957, 11958 and 11959-11961. 17-25. (canceled)
 26. The method of claim 1, further comprising growing the plant under limiting nitrogen conditions.
 27. The method of claim 1, further comprising growing the plant under abiotic stress.
 28. The method of claim 27, wherein said abiotic stress is selected from the group consisting of salinity, drought, water deprivation, flood, etiolation, low temperature, high temperature, heavy metal toxicity, anaerobiosis, nutrient deficiency, nutrient excess, atmospheric pollution and UV irradiation.
 29. The plant of claim 3, being a monocotyledon.
 30. The plant of claim 3, being a dicotyledon.
 31. The method of claim 1, wherein said exogenous polynucleotide encoding a polypeptide having an amino acid sequence at least 80% homologous or identical to SEQ ID NOs: 9591-10364 is selected from the group consisting of SEQ ID Nos: 10365-10963.
 32. The transgenic plant of claim 3, wherein said exogenously expressed polynucleotide encodes a polypeptide having an amino acid sequence at least 80% homologous or identical to SEQ ID NOs: 9591-10364 is selected from the group consisting of SEQ ID NOs. 10365-10963. 33-50. (canceled) 